Wall clock time and date at job start Tue Mar 31 2020 13:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47161 * 2 1 4 4 C 1.50699 * 109.46998 * 179.97438 * 3 2 1 5 5 C 1.37472 * 122.45053 * 264.97407 * 4 3 2 6 6 C 1.36647 * 113.29302 * 180.02562 * 5 4 3 7 7 C 1.46585 * 125.45379 * 179.97438 * 6 5 4 8 8 O 1.21696 * 120.00064 * 5.40705 * 7 6 5 9 9 N 1.34780 * 119.99564 * 185.41100 * 7 6 5 10 10 C 1.47430 * 125.64519 * 174.90131 * 9 7 6 11 11 C 1.54907 * 104.83135 * 155.91076 * 10 9 7 12 12 C 1.55157 * 101.58492 * 37.00643 * 11 10 9 13 13 O 1.42900 * 110.72075 * 82.86267 * 12 11 10 14 14 C 1.50697 * 110.72292 * 205.95792 * 12 11 10 15 15 H 1.08003 * 119.99805 * 357.56191 * 14 12 11 16 16 C 1.37875 * 120.00314 * 177.55822 * 14 12 11 17 17 N 1.31513 * 119.99918 * 359.97438 * 16 14 12 18 18 Si 1.86794 * 120.00092 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47324 * 60.00258 * 18 16 14 20 20 H 1.48499 * 109.47080 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47457 * 300.00054 * 18 16 14 22 22 C 1.47486 * 125.59636 * 354.91646 * 9 7 6 23 23 S 1.75834 * 109.08782 * 0.23103 * 6 5 4 24 24 C 1.33824 * 122.44706 * 85.00718 * 4 3 2 25 25 C 1.50700 * 124.52140 * 359.97308 * 24 4 3 26 26 H 1.09001 * 109.47291 * 59.99544 * 1 2 3 27 27 H 1.09004 * 109.47022 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46831 * 299.99134 * 1 2 3 29 29 H 1.09003 * 109.46831 * 240.00866 * 2 1 3 30 30 H 1.08993 * 109.47357 * 120.00764 * 2 1 3 31 31 H 1.09008 * 109.46826 * 60.00347 * 3 2 1 32 32 H 1.09001 * 109.47390 * 300.00395 * 3 2 1 33 33 H 1.07997 * 123.35478 * 0.04949 * 5 4 3 34 34 H 1.08994 * 110.36634 * 37.06896 * 10 9 7 35 35 H 1.09002 * 110.35971 * 274.74636 * 10 9 7 36 36 H 1.09001 * 111.00365 * 278.92784 * 11 10 9 37 37 H 1.08998 * 111.00632 * 155.08304 * 11 10 9 38 38 H 0.96703 * 114.00369 * 182.44584 * 13 12 11 39 39 H 0.96994 * 120.00004 * 179.97438 * 17 16 14 40 40 H 1.08996 * 110.02874 * 61.64870 * 22 9 7 41 41 H 1.08996 * 109.96503 * 300.33342 * 22 9 7 42 42 H 1.08995 * 109.47136 * 89.99961 * 25 24 4 43 43 H 1.08994 * 109.46946 * 210.00507 * 25 24 4 44 44 H 1.09002 * 109.47183 * 330.00275 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.2842 1.5443 1.1565 6 6 5.6333 1.5257 0.9404 7 6 6.6623 1.6179 1.9803 8 8 6.3423 1.6218 3.1544 9 7 7.9629 1.6985 1.6360 10 6 9.0873 1.9016 2.5676 11 6 10.3202 1.3166 1.8346 12 6 10.0306 1.7221 0.3653 13 8 10.4465 3.0672 0.1206 14 6 10.7060 0.7748 -0.5925 15 1 11.3254 -0.0250 -0.2141 16 6 10.5332 0.9289 -1.9516 17 7 9.7785 1.9024 -2.4123 18 14 11.3710 -0.2450 -3.1387 19 1 10.9088 -1.6310 -2.8733 20 1 11.0273 0.1323 -4.5333 21 1 12.8425 -0.1699 -2.9535 22 6 8.4956 1.5983 0.2643 23 16 5.9373 1.3809 -0.7854 24 6 4.2655 1.3440 -1.1241 25 6 3.6765 1.2225 -2.5059 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 1.8933 -0.5137 -0.8901 30 1 1.8933 -0.5139 0.8898 31 1 1.6767 1.9563 0.8901 32 1 1.6766 1.9564 -0.8899 33 1 3.8411 1.6299 2.1377 34 1 8.9097 1.3645 3.4993 35 1 9.2310 2.9643 2.7628 36 1 10.3595 0.2324 1.9402 37 1 11.2418 1.7759 2.1923 38 1 10.2535 3.3823 -0.7730 39 1 9.6572 2.0111 -3.3685 40 1 8.0982 2.4059 -0.3504 41 1 8.2292 0.6343 -0.1689 42 1 3.5341 2.2169 -2.9289 43 1 4.3537 0.6512 -3.1406 44 1 2.7154 0.7116 -2.4476 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592837974.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:31 Heat of formation + Delta-G solvation = -74.338447 kcal Electronic energy + Delta-G solvation = -25646.181826 eV Core-core repulsion = 22075.190795 eV Total energy + Delta-G solvation = -3570.991031 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.51804 -38.58599 -37.14769 -34.27998 -34.15075 -32.31165 -31.90200 -30.35253 -28.44634 -27.97090 -25.74685 -25.14779 -23.55446 -22.29250 -21.43052 -19.82754 -19.33445 -17.94807 -17.59431 -17.10123 -15.89668 -15.76567 -15.10100 -14.97634 -14.74671 -14.40816 -14.09570 -14.00943 -13.38796 -13.16533 -13.08153 -13.02902 -12.96372 -12.62739 -12.26147 -12.08308 -11.78524 -11.77183 -11.67505 -11.62501 -11.25060 -11.15680 -11.08125 -10.89096 -10.73143 -10.63594 -10.61722 -10.30747 -10.14550 -9.61098 -9.38097 -8.76595 -8.44205 -8.39269 -8.08872 -7.87278 -6.39577 -4.47837 0.86581 1.89256 2.33285 2.60054 3.15633 3.21194 3.24224 3.54745 3.65897 4.18512 4.82624 4.86378 4.88209 4.97725 5.04771 5.14435 5.25517 5.44689 5.54368 5.55247 5.57764 5.65243 5.70348 5.73556 5.78320 5.81256 5.89112 5.94132 5.95294 6.04201 6.16220 6.20030 6.24912 6.38455 6.55383 6.59507 6.69594 6.70810 6.86819 6.99634 7.21694 7.62956 7.87609 8.11563 8.53861 8.62983 9.20449 9.30706 10.67975 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014139 B = 0.004307 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.830452 B = 6500.069726 C = 7951.094857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.056 4.056 4 C -0.127 4.127 5 C -0.060 4.060 6 C -0.267 4.267 7 C 0.597 3.403 8 O -0.556 6.556 9 N -0.610 5.610 10 C 0.111 3.889 11 C -0.119 4.119 12 C 0.255 3.745 13 O -0.582 6.582 14 C -0.538 4.538 15 H 0.068 0.932 16 C 0.073 3.927 17 N -0.896 5.896 18 Si 0.902 3.098 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.274 1.274 22 C 0.080 3.920 23 S 0.272 5.728 24 C -0.234 4.234 25 C -0.082 4.082 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.144 0.856 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.384 0.616 39 H 0.272 0.728 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.712 -1.388 -0.446 12.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.095 4.095 4 C -0.140 4.140 5 C -0.094 4.094 6 C -0.387 4.387 7 C 0.385 3.615 8 O -0.438 6.438 9 N -0.342 5.342 10 C -0.011 4.011 11 C -0.157 4.157 12 C 0.214 3.786 13 O -0.392 6.392 14 C -0.576 4.576 15 H 0.086 0.914 16 C -0.130 4.130 17 N -0.535 5.535 18 Si 0.729 3.271 19 H -0.200 1.200 20 H -0.210 1.210 21 H -0.199 1.199 22 C -0.044 4.044 23 S 0.544 5.456 24 C -0.354 4.354 25 C -0.140 4.140 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.162 0.838 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.235 0.765 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.087 0.913 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.480 -1.420 -0.310 11.572 hybrid contribution -1.149 -0.472 -0.562 1.363 sum -12.629 -1.892 -0.872 12.800 Atomic orbital electron populations 1.21788 0.95938 1.01488 1.01690 1.21518 0.95248 0.96568 1.02454 1.20270 0.89871 0.96982 1.02403 1.18486 0.96817 1.07214 0.91444 1.20418 0.90917 0.98736 0.99325 1.24586 0.97749 1.18352 0.98054 1.16623 0.80765 0.76987 0.87078 1.90744 1.81478 1.53302 1.18264 1.48745 1.04859 1.69602 1.11000 1.22215 0.85649 1.00471 0.92733 1.22790 0.96369 1.00423 0.96068 1.19398 0.86412 0.81909 0.90909 1.86133 1.84885 1.30312 1.37824 1.21506 1.30865 1.14313 0.90913 0.91419 1.25034 0.94169 0.95409 0.98394 1.69615 1.37882 1.31015 1.14972 0.86483 0.80133 0.81015 0.79484 1.19982 1.20996 1.19932 1.23374 0.99272 1.01783 0.79945 1.84510 0.98656 1.64888 0.97512 1.24614 1.02035 1.08784 0.99951 1.20326 1.00737 1.02463 0.90494 0.92851 0.92858 0.92750 0.91936 0.91812 0.91273 0.91304 0.83804 0.91355 0.91634 0.90403 0.90229 0.76509 0.91819 0.90574 0.90714 0.90887 0.91309 0.90844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 37.16 0.37 -0.85 16 2 C -0.12 -1.19 5.85 -26.73 -0.16 -1.35 16 3 C -0.06 -0.61 4.82 -27.88 -0.13 -0.74 16 4 C -0.13 -1.80 5.04 -106.45 -0.54 -2.33 16 5 C -0.06 -0.99 9.78 -40.44 -0.40 -1.38 16 6 C -0.27 -4.99 6.38 -36.79 -0.23 -5.22 16 7 C 0.60 12.67 7.80 -12.89 -0.10 12.57 16 8 O -0.56 -12.80 17.08 5.19 0.09 -12.71 16 9 N -0.61 -12.89 3.34 -171.72 -0.57 -13.46 16 10 C 0.11 2.19 6.92 -2.53 -0.02 2.18 16 11 C -0.12 -2.38 6.22 -24.58 -0.15 -2.54 16 12 C 0.25 5.86 0.85 -89.94 -0.08 5.79 16 13 O -0.58 -14.05 13.07 -35.23 -0.46 -14.51 16 14 C -0.54 -13.21 8.11 -34.44 -0.28 -13.49 16 15 H 0.07 1.65 7.77 -52.48 -0.41 1.25 16 16 C 0.07 1.76 5.27 -17.82 -0.09 1.67 16 17 N -0.90 -21.48 10.96 55.43 0.61 -20.87 16 18 Si 0.90 19.17 29.54 -169.99 -5.02 14.15 16 19 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 20 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 21 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 22 C 0.08 1.74 3.70 -2.81 -0.01 1.73 16 23 S 0.27 4.68 18.41 -107.50 -1.98 2.70 16 24 C -0.23 -3.37 6.28 -35.86 -0.23 -3.60 16 25 C -0.08 -0.92 9.71 36.01 0.35 -0.57 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.63 7.24 -51.93 -0.38 0.25 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.71 8.10 -51.92 -0.42 0.29 16 32 H 0.07 0.68 7.46 -51.93 -0.39 0.29 16 33 H 0.14 2.25 8.06 -52.49 -0.42 1.83 16 34 H 0.07 1.27 7.99 -51.93 -0.41 0.85 16 35 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.08 1.50 8.04 -51.93 -0.42 1.09 16 37 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 38 H 0.38 9.33 7.23 45.56 0.33 9.66 16 39 H 0.27 6.28 8.31 -40.82 -0.34 5.94 16 40 H 0.08 1.72 6.66 -51.93 -0.35 1.38 16 41 H 0.07 1.70 6.72 -51.93 -0.35 1.35 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.07 0.70 6.40 -51.93 -0.33 0.37 16 LS Contribution 365.47 15.07 5.51 5.51 Total: -1.00 -26.94 365.47 -9.59 -36.52 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -6.06 Total: 10.81 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: -1.70 Total: -8.14 kcal Atomic # 7 Polarization: -34.37 SS G_CDS: 0.03 Total: -34.33 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -0.37 Total: -27.22 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.02 Total: 14.15 kcal Atomic # 16 Polarization: 4.68 SS G_CDS: -1.98 Total: 2.70 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -26.94 -9.59 -36.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592837974.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.815 kcal (2) G-P(sol) polarization free energy of solvation -26.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds