Wall clock time and date at job start Tue Mar 31 2020 13:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47161 * 2 1 4 4 C 1.50699 * 109.46998 * 179.97438 * 3 2 1 5 5 C 1.37472 * 122.45053 * 264.97407 * 4 3 2 6 6 C 1.36647 * 113.29302 * 180.02562 * 5 4 3 7 7 C 1.46585 * 125.45379 * 179.97438 * 6 5 4 8 8 O 1.21696 * 120.00064 * 5.40705 * 7 6 5 9 9 N 1.34780 * 119.99564 * 185.41100 * 7 6 5 10 10 C 1.47430 * 125.64519 * 174.90131 * 9 7 6 11 11 C 1.54907 * 104.83135 * 155.91076 * 10 9 7 12 12 C 1.55157 * 101.58492 * 37.00643 * 11 10 9 13 13 O 1.42900 * 110.72075 * 82.86267 * 12 11 10 14 14 C 1.50697 * 110.72292 * 205.95792 * 12 11 10 15 15 H 1.08003 * 119.99805 * 357.56191 * 14 12 11 16 16 C 1.37875 * 120.00314 * 177.55822 * 14 12 11 17 17 N 1.31513 * 119.99918 * 359.97438 * 16 14 12 18 18 Si 1.86794 * 120.00092 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47324 * 60.00258 * 18 16 14 20 20 H 1.48499 * 109.47080 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47457 * 300.00054 * 18 16 14 22 22 C 1.47486 * 125.59636 * 354.91646 * 9 7 6 23 23 S 1.75834 * 109.08782 * 0.23103 * 6 5 4 24 24 C 1.33824 * 122.44706 * 85.00718 * 4 3 2 25 25 C 1.50700 * 124.52140 * 359.97308 * 24 4 3 26 26 H 1.09001 * 109.47291 * 59.99544 * 1 2 3 27 27 H 1.09004 * 109.47022 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46831 * 299.99134 * 1 2 3 29 29 H 1.09003 * 109.46831 * 240.00866 * 2 1 3 30 30 H 1.08993 * 109.47357 * 120.00764 * 2 1 3 31 31 H 1.09008 * 109.46826 * 60.00347 * 3 2 1 32 32 H 1.09001 * 109.47390 * 300.00395 * 3 2 1 33 33 H 1.07997 * 123.35478 * 0.04949 * 5 4 3 34 34 H 1.08994 * 110.36634 * 37.06896 * 10 9 7 35 35 H 1.09002 * 110.35971 * 274.74636 * 10 9 7 36 36 H 1.09001 * 111.00365 * 278.92784 * 11 10 9 37 37 H 1.08998 * 111.00632 * 155.08304 * 11 10 9 38 38 H 0.96703 * 114.00369 * 182.44584 * 13 12 11 39 39 H 0.96994 * 120.00004 * 179.97438 * 17 16 14 40 40 H 1.08996 * 110.02874 * 61.64870 * 22 9 7 41 41 H 1.08996 * 109.96503 * 300.33342 * 22 9 7 42 42 H 1.08995 * 109.47136 * 89.99961 * 25 24 4 43 43 H 1.08994 * 109.46946 * 210.00507 * 25 24 4 44 44 H 1.09002 * 109.47183 * 330.00275 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.2842 1.5443 1.1565 6 6 5.6333 1.5257 0.9404 7 6 6.6623 1.6179 1.9803 8 8 6.3423 1.6218 3.1544 9 7 7.9629 1.6985 1.6360 10 6 9.0873 1.9016 2.5676 11 6 10.3202 1.3166 1.8346 12 6 10.0306 1.7221 0.3653 13 8 10.4465 3.0672 0.1206 14 6 10.7060 0.7748 -0.5925 15 1 11.3254 -0.0250 -0.2141 16 6 10.5332 0.9289 -1.9516 17 7 9.7785 1.9024 -2.4123 18 14 11.3710 -0.2450 -3.1387 19 1 10.9088 -1.6310 -2.8733 20 1 11.0273 0.1323 -4.5333 21 1 12.8425 -0.1699 -2.9535 22 6 8.4956 1.5983 0.2643 23 16 5.9373 1.3809 -0.7854 24 6 4.2655 1.3440 -1.1241 25 6 3.6765 1.2225 -2.5059 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 1.8933 -0.5137 -0.8901 30 1 1.8933 -0.5139 0.8898 31 1 1.6767 1.9563 0.8901 32 1 1.6766 1.9564 -0.8899 33 1 3.8411 1.6299 2.1377 34 1 8.9097 1.3645 3.4993 35 1 9.2310 2.9643 2.7628 36 1 10.3595 0.2324 1.9402 37 1 11.2418 1.7759 2.1923 38 1 10.2535 3.3823 -0.7730 39 1 9.6572 2.0111 -3.3685 40 1 8.0982 2.4059 -0.3504 41 1 8.2292 0.6343 -0.1689 42 1 3.5341 2.2169 -2.9289 43 1 4.3537 0.6512 -3.1406 44 1 2.7154 0.7116 -2.4476 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592837974.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:30 Heat of formation + Delta-G solvation = -89.191746 kcal Electronic energy + Delta-G solvation = -25646.825913 eV Core-core repulsion = 22075.190795 eV Total energy + Delta-G solvation = -3571.635118 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.13538 -39.85756 -38.80719 -36.02905 -35.08559 -34.18056 -33.10074 -31.92285 -29.83065 -29.29732 -27.13066 -26.68966 -24.92293 -23.55810 -22.49111 -21.51522 -20.74195 -19.26800 -19.23819 -18.76578 -17.51027 -17.08733 -16.76891 -16.66502 -16.03169 -15.66314 -15.32718 -15.14559 -14.87419 -14.77308 -14.67228 -14.31407 -13.92935 -13.80342 -13.60702 -13.47105 -13.42749 -13.01580 -12.84569 -12.76207 -12.68191 -12.54107 -12.33815 -12.29559 -12.24832 -12.12680 -11.95022 -11.59933 -11.42504 -11.27345 -11.05439 -10.60224 -10.25174 -9.89885 -9.41582 -9.33080 -8.22959 -6.37692 -0.46384 0.56638 1.06713 1.32660 1.46312 1.48930 1.54835 1.96039 2.11131 2.41656 3.02272 3.48499 3.84269 3.87033 3.99737 4.05062 4.12181 4.15673 4.27674 4.28852 4.32326 4.53950 4.57219 4.64524 4.68116 4.70728 4.76218 4.87135 4.90020 4.96719 5.03126 5.04464 5.08971 5.17204 5.24426 5.25138 5.26779 5.45065 5.46946 5.51680 5.58736 5.76643 6.04348 6.44238 6.66215 6.97159 7.31721 7.40267 8.83257 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014139 B = 0.004307 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.830452 B = 6500.069726 C = 7951.094857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.118 4.118 3 C -0.052 4.052 4 C -0.130 4.130 5 C -0.047 4.047 6 C -0.304 4.304 7 C 0.592 3.408 8 O -0.583 6.583 9 N -0.616 5.616 10 C 0.112 3.888 11 C -0.112 4.112 12 C 0.239 3.761 13 O -0.589 6.589 14 C -0.562 4.562 15 H 0.063 0.937 16 C 0.041 3.959 17 N -0.904 5.904 18 Si 0.954 3.046 19 H -0.274 1.274 20 H -0.280 1.280 21 H -0.277 1.277 22 C 0.101 3.899 23 S 0.231 5.769 24 C -0.212 4.212 25 C -0.084 4.084 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.050 0.950 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.149 0.851 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.380 0.620 39 H 0.274 0.726 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.089 0.911 43 H 0.071 0.929 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.572 -1.825 -1.603 14.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C -0.092 4.092 4 C -0.142 4.142 5 C -0.082 4.082 6 C -0.424 4.424 7 C 0.383 3.617 8 O -0.467 6.467 9 N -0.348 5.348 10 C -0.010 4.010 11 C -0.150 4.150 12 C 0.198 3.802 13 O -0.398 6.398 14 C -0.600 4.600 15 H 0.081 0.919 16 C -0.162 4.162 17 N -0.542 5.542 18 Si 0.780 3.220 19 H -0.199 1.199 20 H -0.205 1.205 21 H -0.202 1.202 22 C -0.022 4.022 23 S 0.503 5.497 24 C -0.332 4.332 25 C -0.142 4.142 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.166 0.834 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.102 0.898 37 H 0.108 0.892 38 H 0.230 0.770 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.107 0.893 43 H 0.090 0.910 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -13.331 -1.854 -1.462 13.539 hybrid contribution -0.663 -0.324 -0.228 0.772 sum -13.994 -2.178 -1.690 14.263 Atomic orbital electron populations 1.21756 0.94274 1.02107 1.02401 1.21493 0.96651 0.95604 1.01855 1.20363 0.87116 0.97984 1.03716 1.18785 0.98665 1.06388 0.90323 1.20709 0.90320 0.96687 1.00476 1.24426 0.97960 1.21928 0.98058 1.16999 0.81080 0.76215 0.87387 1.90706 1.81849 1.54738 1.19367 1.48822 1.05329 1.69720 1.10883 1.22263 0.85147 1.00661 0.92944 1.22768 0.97011 1.00871 0.94326 1.19617 0.87073 0.81166 0.92325 1.86124 1.85119 1.31059 1.37500 1.21694 1.31636 1.14847 0.91793 0.91912 1.25593 0.94569 0.96576 0.99420 1.69677 1.37862 1.31430 1.15256 0.85663 0.78955 0.79397 0.77950 1.19900 1.20461 1.20207 1.23001 0.98424 1.00661 0.80134 1.84567 1.01748 1.66225 0.97181 1.24962 0.99932 1.06531 1.01759 1.20507 1.01632 1.03801 0.88307 0.91746 0.92349 0.92454 0.91929 0.93127 0.90560 0.89453 0.83365 0.90221 0.91586 0.89802 0.89204 0.77009 0.91619 0.91638 0.91908 0.89271 0.91037 0.88440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.91 71.98 0.71 -1.21 16 2 C -0.12 -2.02 5.85 30.59 0.18 -1.84 16 3 C -0.05 -0.98 4.82 29.85 0.14 -0.84 16 4 C -0.13 -3.43 5.04 -21.05 -0.11 -3.54 16 5 C -0.05 -1.52 9.78 21.72 0.21 -1.30 16 6 C -0.30 -11.51 6.38 24.08 0.15 -11.36 16 7 C 0.59 25.71 7.80 86.42 0.67 26.39 16 8 O -0.58 -27.29 17.08 -4.33 -0.07 -27.37 16 9 N -0.62 -26.56 3.34 -815.42 -2.72 -29.29 16 10 C 0.11 4.43 6.92 86.85 0.60 5.03 16 11 C -0.11 -4.51 6.22 31.99 0.20 -4.31 16 12 C 0.24 11.14 0.85 -10.35 -0.01 11.13 16 13 O -0.59 -28.86 13.07 -148.98 -1.95 -30.81 16 14 C -0.56 -27.83 8.11 25.60 0.21 -27.62 16 15 H 0.06 3.09 7.77 -2.91 -0.02 3.07 16 16 C 0.04 1.96 5.27 84.65 0.45 2.41 16 17 N -0.90 -43.46 10.96 21.45 0.24 -43.22 16 18 Si 0.95 39.02 29.54 68.60 2.03 41.05 16 19 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 20 H -0.28 -11.12 7.11 99.48 0.71 -10.41 16 21 H -0.28 -11.37 7.11 99.48 0.71 -10.67 16 22 C 0.10 4.54 3.70 86.64 0.32 4.86 16 23 S 0.23 7.99 18.41 -56.49 -1.04 6.95 16 24 C -0.21 -5.73 6.28 24.68 0.15 -5.58 16 25 C -0.08 -1.63 9.71 71.24 0.69 -0.94 16 26 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 28 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.06 1.07 7.24 -2.39 -0.02 1.05 16 30 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.08 1.35 8.10 -2.38 -0.02 1.33 16 32 H 0.09 1.36 7.46 -2.39 -0.02 1.34 16 33 H 0.15 4.56 8.06 -2.91 -0.02 4.54 16 34 H 0.08 2.95 7.99 -2.39 -0.02 2.93 16 35 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 36 H 0.08 3.24 8.04 -2.39 -0.02 3.22 16 37 H 0.09 3.39 8.14 -2.39 -0.02 3.37 16 38 H 0.38 18.86 7.23 -74.06 -0.54 18.32 16 39 H 0.27 12.59 8.31 -92.71 -0.77 11.82 16 40 H 0.07 3.06 6.66 -2.39 -0.02 3.04 16 41 H 0.06 2.94 6.72 -2.39 -0.02 2.93 16 42 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.10 1.46 6.40 -2.39 -0.02 1.45 16 Total: -1.00 -57.51 365.47 1.54 -55.97 By element: Atomic # 1 Polarization: 34.96 SS G_CDS: 0.47 Total: 35.44 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: 4.58 Total: -8.72 kcal Atomic # 7 Polarization: -70.02 SS G_CDS: -2.49 Total: -72.51 kcal Atomic # 8 Polarization: -56.16 SS G_CDS: -2.02 Total: -58.18 kcal Atomic # 14 Polarization: 39.02 SS G_CDS: 2.03 Total: 41.05 kcal Atomic # 16 Polarization: 7.99 SS G_CDS: -1.04 Total: 6.95 kcal Total: -57.51 1.54 -55.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592837974.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.218 kcal (2) G-P(sol) polarization free energy of solvation -57.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds