Wall clock time and date at job start Tue Mar 31 2020 13:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47299 * 2 1 4 4 C 1.52998 * 109.47170 * 240.00098 * 2 1 3 5 5 C 1.50703 * 109.47190 * 120.00053 * 2 1 3 6 6 C 1.33820 * 124.52257 * 60.00121 * 5 2 1 7 7 C 1.37473 * 115.10079 * 180.02562 * 6 5 2 8 8 C 1.36651 * 113.29540 * 0.02562 * 7 6 5 9 9 C 1.46580 * 125.45483 * 180.02562 * 8 7 6 10 10 O 1.21703 * 120.00329 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99688 * 179.97438 * 9 8 7 12 12 C 1.47023 * 125.65028 * 359.95308 * 11 9 8 13 13 C 1.54428 * 107.28135 * 181.09744 * 12 11 9 14 14 C 1.55160 * 102.89386 * 22.18588 * 13 12 11 15 15 O 1.42905 * 111.00102 * 82.59578 * 14 13 12 16 16 C 1.50701 * 111.00410 * 206.40650 * 14 13 12 17 17 H 1.07994 * 120.00187 * 356.81970 * 16 14 13 18 18 C 1.37878 * 119.99769 * 176.82468 * 16 14 13 19 19 N 1.31509 * 120.00073 * 359.97438 * 18 16 14 20 20 Si 1.86803 * 119.99731 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47016 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.46880 * 119.99821 * 20 18 16 23 23 H 1.48498 * 109.46921 * 239.99525 * 20 18 16 24 24 C 1.47433 * 125.64677 * 179.97438 * 11 9 8 25 25 S 1.70621 * 124.52339 * 240.35619 * 5 2 1 26 26 H 1.08997 * 109.47425 * 299.99748 * 1 2 3 27 27 H 1.08993 * 109.47279 * 60.00100 * 1 2 3 28 28 H 1.09000 * 109.47267 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47538 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47254 * 300.00139 * 3 2 1 31 31 H 1.08998 * 109.47167 * 59.99601 * 3 2 1 32 32 H 1.09000 * 109.47459 * 299.99874 * 4 2 1 33 33 H 1.08993 * 109.47651 * 59.99991 * 4 2 1 34 34 H 1.09006 * 109.47114 * 179.97438 * 4 2 1 35 35 H 1.08003 * 122.44839 * 0.05656 * 6 5 2 36 36 H 1.07998 * 123.35244 * 180.02562 * 7 6 5 37 37 H 1.08996 * 109.88347 * 300.51248 * 12 11 9 38 38 H 1.09002 * 109.87899 * 61.53090 * 12 11 9 39 39 H 1.08999 * 110.72281 * 263.84993 * 13 12 11 40 40 H 1.08996 * 110.76416 * 140.54540 * 13 12 11 41 41 H 0.96697 * 113.99904 * 183.18164 * 15 14 13 42 42 H 0.97000 * 120.00160 * 180.02562 * 19 18 16 43 43 H 1.09000 * 110.36418 * 37.00051 * 24 11 9 44 44 H 1.08997 * 110.36595 * 274.67504 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 1.7654 -1.9867 1.5314 7 6 2.3231 -2.4384 2.7040 8 6 3.0569 -1.4870 3.3550 9 6 3.7652 -1.6802 4.6237 10 8 3.7268 -2.7600 5.1838 11 7 4.4590 -0.6619 5.1699 12 6 4.5894 0.6880 4.6022 13 6 5.4933 1.5008 5.5546 14 6 6.2813 0.3978 6.3095 15 8 7.4007 -0.0486 5.5416 16 6 6.7200 0.8811 7.6679 17 1 6.5179 1.8978 7.9705 18 6 7.3795 0.0250 8.5242 19 7 7.6252 -1.2133 8.1558 20 14 7.9227 0.6238 10.2082 21 1 7.5289 2.0455 10.3788 22 1 7.2733 -0.1997 11.2595 23 1 9.3980 0.5019 10.3247 24 6 5.2133 -0.7175 6.4354 25 16 3.0102 0.0077 2.4302 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6767 -1.7489 -1.2493 33 1 1.6767 -0.2075 -2.1392 34 1 3.1300 -0.7208 -1.2495 35 1 1.1568 -2.6161 0.8990 36 1 2.1942 -3.4448 3.0738 37 1 5.0470 0.6322 3.6146 38 1 3.6076 1.1561 4.5300 39 1 4.8925 2.0889 6.2483 40 1 6.1712 2.1417 4.9908 41 1 7.8952 -0.7717 5.9509 42 1 8.0888 -1.8156 8.7584 43 1 5.6922 -1.6900 6.5492 44 1 4.5533 -0.5175 7.2795 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592846527.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:41 Heat of formation + Delta-G solvation = -66.397205 kcal Electronic energy + Delta-G solvation = -25539.462973 eV Core-core repulsion = 21968.816300 eV Total energy + Delta-G solvation = -3570.646673 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.48544 -38.76213 -37.23178 -35.74778 -34.31301 -32.21505 -30.40495 -29.14061 -27.82433 -27.61596 -27.51770 -25.64175 -24.35317 -22.63211 -20.58404 -20.36731 -19.64046 -17.81862 -17.54272 -17.10319 -15.77606 -15.64561 -15.25057 -15.14900 -14.58206 -14.53830 -14.26723 -14.19719 -13.35958 -13.30986 -13.07541 -12.94812 -12.82654 -12.66583 -12.21239 -12.14938 -12.00914 -11.94835 -11.67025 -11.51721 -11.43675 -11.21725 -11.17614 -11.08437 -10.94254 -10.70434 -10.48607 -10.34502 -10.19619 -9.54475 -9.39468 -8.72430 -8.59820 -8.46037 -8.37027 -7.80393 -6.30730 -4.40556 0.69817 1.62432 2.07523 2.55280 3.18478 3.27660 3.30740 3.57566 3.66038 4.24752 4.31908 4.58899 4.68185 4.92153 5.01175 5.03383 5.29886 5.30881 5.34317 5.42005 5.48680 5.52835 5.54457 5.59237 5.64092 5.70767 5.73868 5.84006 5.94169 5.95269 6.02736 6.05009 6.17580 6.33899 6.43569 6.48070 6.66705 6.80302 6.93144 7.21308 7.31053 7.71777 7.97045 8.13418 8.62215 8.67544 9.28462 9.38542 10.76615 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.027925 B = 0.003164 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.429584 B = 8846.814086 C = 9374.112598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.002 3.998 3 C -0.154 4.154 4 C -0.136 4.136 5 C -0.211 4.211 6 C -0.151 4.151 7 C -0.065 4.065 8 C -0.256 4.256 9 C 0.591 3.409 10 O -0.542 6.542 11 N -0.604 5.604 12 C 0.092 3.908 13 C -0.112 4.112 14 C 0.249 3.751 15 O -0.583 6.583 16 C -0.538 4.538 17 H 0.068 0.932 18 C 0.071 3.929 19 N -0.893 5.893 20 Si 0.904 3.096 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.281 1.281 24 C 0.095 3.905 25 S 0.226 5.774 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.135 0.865 36 H 0.148 0.852 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.384 0.616 42 H 0.270 0.730 43 H 0.087 0.913 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.987 4.092 -16.181 20.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.000 4.000 3 C -0.212 4.212 4 C -0.194 4.194 5 C -0.330 4.330 6 C -0.182 4.182 7 C -0.098 4.098 8 C -0.376 4.376 9 C 0.379 3.621 10 O -0.423 6.423 11 N -0.335 5.335 12 C -0.032 4.032 13 C -0.150 4.150 14 C 0.208 3.792 15 O -0.392 6.392 16 C -0.576 4.576 17 H 0.087 0.913 18 C -0.133 4.133 19 N -0.532 5.532 20 Si 0.732 3.268 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.207 1.207 24 C -0.026 4.026 25 S 0.496 5.504 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.153 0.847 36 H 0.166 0.834 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.235 0.765 42 H 0.081 0.919 43 H 0.105 0.895 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.540 5.213 -16.037 20.433 hybrid contribution -0.224 -1.805 1.052 2.101 sum -11.764 3.408 -14.985 19.354 Atomic orbital electron populations 1.21878 0.93204 1.02286 1.01985 1.19094 0.95736 0.94431 0.90696 1.22011 1.01751 0.94792 1.02637 1.21882 1.01515 1.00288 0.95714 1.24617 1.05935 0.99608 1.02889 1.19775 1.04666 0.95325 0.98385 1.20651 0.95344 1.00109 0.93726 1.24814 1.10884 0.99335 1.02585 1.16610 0.78888 0.83622 0.82960 1.90796 1.63576 1.24917 1.62972 1.48618 1.49243 1.10562 1.25111 1.22130 0.99403 0.83679 0.98015 1.22617 0.97101 0.97849 0.97428 1.19623 0.82895 0.87567 0.89079 1.86083 1.44376 1.57771 1.50983 1.21500 1.38354 0.98675 0.99100 0.91348 1.25089 0.94574 0.94600 0.98989 1.69658 1.40998 1.05037 1.37470 0.86334 0.78418 0.79021 0.83046 1.19552 1.20761 1.20734 1.23338 0.93486 1.03736 0.82012 1.83440 1.44572 1.11385 1.10983 0.92328 0.92135 0.92272 0.91848 0.91481 0.91932 0.92266 0.92134 0.92264 0.84707 0.83436 0.91554 0.92139 0.90119 0.90374 0.76474 0.91941 0.89499 0.91866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 8.33 37.16 0.31 -0.73 16 2 C 0.00 0.02 0.90 -155.66 -0.14 -0.12 16 3 C -0.15 -1.24 7.52 37.16 0.28 -0.96 16 4 C -0.14 -1.07 8.33 37.16 0.31 -0.76 16 5 C -0.21 -2.44 4.97 -35.86 -0.18 -2.62 16 6 C -0.15 -1.84 9.19 -41.41 -0.38 -2.22 16 7 C -0.07 -0.98 10.01 -40.43 -0.40 -1.38 16 8 C -0.26 -4.37 6.38 -36.79 -0.23 -4.61 16 9 C 0.59 12.63 7.82 -12.90 -0.10 12.53 16 10 O -0.54 -13.36 17.10 5.19 0.09 -13.27 16 11 N -0.60 -12.82 3.33 -172.01 -0.57 -13.40 16 12 C 0.09 1.65 5.18 -3.01 -0.02 1.63 16 13 C -0.11 -2.18 6.13 -24.84 -0.15 -2.33 16 14 C 0.25 5.96 0.88 -89.61 -0.08 5.88 16 15 O -0.58 -14.78 13.17 -35.23 -0.46 -15.24 16 16 C -0.54 -13.77 8.26 -34.44 -0.28 -14.05 16 17 H 0.07 1.71 7.78 -52.49 -0.41 1.30 16 18 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16 19 N -0.89 -23.67 10.69 55.43 0.59 -23.08 16 20 Si 0.90 20.15 29.54 -169.99 -5.02 15.13 16 21 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 24 C 0.10 2.30 5.51 -2.52 -0.01 2.29 16 25 S 0.23 2.99 16.70 -107.50 -1.80 1.19 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.45 7.86 -51.93 -0.41 0.04 16 29 H 0.06 0.53 7.91 -51.93 -0.41 0.12 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.51 7.89 -51.93 -0.41 0.10 16 32 H 0.06 0.46 7.86 -51.93 -0.41 0.05 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.14 1.34 7.90 -52.48 -0.41 0.92 16 36 H 0.15 2.17 8.06 -52.49 -0.42 1.75 16 37 H 0.07 1.13 6.84 -51.93 -0.36 0.77 16 38 H 0.06 0.93 6.96 -51.93 -0.36 0.56 16 39 H 0.08 1.46 8.03 -51.93 -0.42 1.04 16 40 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 41 H 0.38 10.08 7.25 45.56 0.33 10.41 16 42 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 43 H 0.09 2.36 7.47 -51.93 -0.39 1.97 16 44 H 0.06 1.56 8.03 -51.93 -0.42 1.14 16 LS Contribution 363.52 15.07 5.48 5.48 Total: -1.00 -29.41 363.52 -9.04 -38.45 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -6.16 Total: 10.48 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: -1.18 Total: -5.73 kcal Atomic # 7 Polarization: -36.50 SS G_CDS: 0.02 Total: -36.48 kcal Atomic # 8 Polarization: -28.14 SS G_CDS: -0.38 Total: -28.52 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Atomic # 16 Polarization: 2.99 SS G_CDS: -1.80 Total: 1.19 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.41 -9.04 -38.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592846527.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.951 kcal (2) G-P(sol) polarization free energy of solvation -29.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds