Wall clock time and date at job start Tue Mar 31 2020 13:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50706 * 109.47116 * 2 1 4 4 C 1.38256 * 119.99730 * 89.99865 * 3 2 1 5 5 C 1.38214 * 120.00164 * 179.97438 * 4 3 2 6 6 C 1.38260 * 119.99662 * 359.97438 * 5 4 3 7 7 C 1.38212 * 120.00038 * 0.02562 * 6 5 4 8 8 S 1.76199 * 120.00030 * 180.02562 * 7 6 5 9 9 O 1.42097 * 106.40669 * 203.54438 * 8 7 6 10 10 O 1.42100 * 106.40196 * 336.46338 * 8 7 6 11 11 N 1.65606 * 107.21720 * 90.00155 * 8 7 6 12 12 C 1.46920 * 120.62778 * 90.00198 * 11 8 7 13 13 C 1.53201 * 108.77336 * 233.58417 * 12 11 8 14 14 C 1.53034 * 109.31334 * 305.36804 * 13 12 11 15 15 C 1.53037 * 109.54036 * 61.36424 * 14 13 12 16 16 H 1.09002 * 109.50080 * 58.58492 * 15 14 13 17 17 C 1.50696 * 109.50101 * 178.68353 * 15 14 13 18 18 H 1.08006 * 120.00311 * 119.99825 * 17 15 14 19 19 C 1.37876 * 119.99919 * 300.00204 * 17 15 14 20 20 N 1.31511 * 120.00244 * 359.97438 * 19 17 15 21 21 Si 1.86800 * 120.00110 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46902 * 59.99949 * 21 19 17 23 23 H 1.48504 * 109.47279 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47403 * 300.00062 * 21 19 17 25 25 C 1.46924 * 120.62896 * 269.71986 * 11 8 7 26 26 C 1.38211 * 120.00152 * 269.72536 * 3 2 1 27 27 H 1.09000 * 109.47214 * 300.00167 * 1 2 3 28 28 H 1.09008 * 109.47142 * 59.99333 * 1 2 3 29 29 H 1.08992 * 109.47123 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46884 * 240.00733 * 2 1 3 31 31 H 1.09000 * 109.46955 * 120.00048 * 2 1 3 32 32 H 1.07999 * 120.00073 * 0.02562 * 4 3 2 33 33 H 1.07992 * 119.99988 * 180.02562 * 5 4 3 34 34 H 1.08001 * 119.99576 * 180.02562 * 6 5 4 35 35 H 1.08992 * 109.58928 * 353.37018 * 12 11 8 36 36 H 1.09002 * 109.59021 * 113.80147 * 12 11 8 37 37 H 1.08997 * 109.49286 * 65.32040 * 13 12 11 38 38 H 1.09003 * 109.49325 * 185.41497 * 13 12 11 39 39 H 1.09001 * 109.46031 * 181.38681 * 14 13 12 40 40 H 1.09003 * 109.46014 * 301.34182 * 14 13 12 41 41 H 0.96998 * 120.00210 * 180.02562 * 20 19 17 42 42 H 1.08992 * 109.58901 * 246.19769 * 25 11 8 43 43 H 1.08998 * 109.58891 * 6.63104 * 25 11 8 44 44 H 1.08004 * 119.99891 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2627 2.0726 1.1974 5 6 2.7239 3.3755 1.1975 6 6 2.9554 4.0269 0.0001 7 6 2.7251 3.3754 -1.1968 8 16 3.0207 4.2053 -2.7228 9 8 2.2134 3.5565 -3.6956 10 8 2.9366 5.5965 -2.4457 11 7 4.5937 3.9072 -3.1462 12 6 4.9389 2.7405 -3.9698 13 6 6.0240 1.9329 -3.2504 14 6 7.2076 2.8485 -2.9300 15 6 6.7473 3.9739 -2.0007 16 1 6.3359 3.5456 -1.0866 17 6 7.9204 4.8563 -1.6598 18 1 7.9000 5.9051 -1.9171 19 6 9.0197 4.3248 -1.0195 20 7 9.0443 3.0479 -0.7057 21 14 10.4741 5.4184 -0.5975 22 1 10.0270 6.5106 0.3040 23 1 11.5194 4.6117 0.0820 24 1 11.0323 6.0024 -1.8436 25 6 5.6698 4.8078 -2.7106 26 6 2.2681 2.0705 -1.1969 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5140 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5137 -0.8901 31 1 1.8933 -0.5138 0.8900 32 1 2.0831 1.5633 2.1327 33 1 2.9043 3.8844 2.1327 34 1 3.3162 5.0449 0.0002 35 1 4.0549 2.1191 -4.1119 36 1 5.3131 3.0742 -4.9376 37 1 5.6194 1.5238 -2.3247 38 1 6.3577 1.1184 -3.8935 39 1 7.9914 2.2707 -2.4401 40 1 7.5962 3.2766 -3.8540 41 1 9.8175 2.6741 -0.2549 42 1 6.1023 5.3066 -3.5777 43 1 5.2680 5.5507 -2.0216 44 1 2.0919 1.5600 -2.1322 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594801538.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:03 Heat of formation + Delta-G solvation = -83.271954 kcal Electronic energy + Delta-G solvation = -26302.132402 eV Core-core repulsion = 22730.753985 eV Total energy + Delta-G solvation = -3571.378417 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.39456 -39.29554 -38.43857 -37.01283 -35.19361 -35.14134 -32.71933 -32.25243 -31.84907 -30.38721 -27.02363 -25.22569 -24.94434 -24.25477 -23.32500 -22.29601 -21.07497 -19.74895 -18.95182 -18.42390 -18.04516 -17.22620 -17.03720 -16.60673 -16.25722 -15.57823 -15.39394 -15.20317 -14.82536 -14.78365 -14.47713 -14.42859 -14.35478 -14.21955 -13.83062 -13.35403 -13.31178 -13.27092 -13.12827 -12.87900 -12.77957 -12.75911 -12.68591 -12.54098 -12.15933 -11.89326 -11.81607 -11.78482 -11.72365 -11.48809 -11.06781 -10.75678 -10.39725 -10.33341 -9.81774 -9.75814 -8.05377 -6.19468 -0.67670 -0.16555 0.28580 1.45168 1.45428 1.52659 1.88836 2.45581 2.48425 2.74572 3.19495 3.21773 3.70801 3.81343 3.83091 4.01505 4.20022 4.24550 4.25965 4.32066 4.45016 4.50491 4.57962 4.60450 4.61227 4.74955 4.81061 4.87866 4.94136 4.99149 5.02014 5.08079 5.10022 5.12919 5.28730 5.29418 5.37654 5.38413 5.48501 5.55172 5.66878 5.73373 5.88035 6.01104 6.18422 6.41500 6.91373 7.48384 8.97792 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013635 B = 0.004530 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.057936 B = 6179.636698 C = 6799.347757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.108 4.108 4 C -0.064 4.064 5 C -0.141 4.141 6 C -0.045 4.045 7 C -0.679 4.679 8 S 2.700 3.300 9 O -0.977 6.977 10 O -0.987 6.987 11 N -0.993 5.993 12 C 0.121 3.879 13 C -0.125 4.125 14 C -0.105 4.105 15 C 0.041 3.959 16 H 0.000 1.000 17 C -0.537 4.537 18 H 0.056 0.944 19 C 0.020 3.980 20 N -0.912 5.912 21 Si 0.949 3.051 22 H -0.274 1.274 23 H -0.286 1.286 24 H -0.272 1.272 25 C 0.135 3.865 26 C -0.034 4.034 27 H 0.058 0.942 28 H 0.048 0.952 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.160 0.840 33 H 0.153 0.847 34 H 0.132 0.868 35 H 0.099 0.901 36 H 0.083 0.917 37 H 0.048 0.952 38 H 0.082 0.918 39 H 0.062 0.938 40 H 0.034 0.966 41 H 0.260 0.740 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.198 -6.871 1.345 15.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.108 4.108 4 C -0.082 4.082 5 C -0.160 4.160 6 C -0.064 4.064 7 C -0.768 4.768 8 S 2.794 3.206 9 O -0.967 6.967 10 O -0.978 6.978 11 N -0.831 5.831 12 C -0.003 4.003 13 C -0.164 4.164 14 C -0.143 4.143 15 C 0.021 3.979 16 H 0.018 0.982 17 C -0.575 4.575 18 H 0.074 0.926 19 C -0.179 4.179 20 N -0.551 5.551 21 Si 0.775 3.225 22 H -0.199 1.199 23 H -0.212 1.212 24 H -0.197 1.197 25 C 0.010 3.990 26 C -0.054 4.054 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.108 0.892 32 H 0.178 0.822 33 H 0.171 0.829 34 H 0.150 0.850 35 H 0.118 0.882 36 H 0.101 0.899 37 H 0.067 0.933 38 H 0.100 0.900 39 H 0.080 0.920 40 H 0.052 0.948 41 H 0.069 0.931 42 H 0.086 0.914 43 H 0.090 0.910 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -14.693 -6.490 0.922 16.089 hybrid contribution 1.382 0.395 0.985 1.743 sum -13.311 -6.095 1.908 14.764 Atomic orbital electron populations 1.21769 0.93760 1.02836 1.02016 1.20644 0.96886 0.90310 1.04336 1.20385 0.99735 0.98082 0.92646 1.21736 0.93497 0.93988 0.98987 1.21606 1.00025 0.95963 0.98406 1.21086 0.93513 0.99677 0.92136 1.30824 1.17440 1.08654 1.19861 1.01409 0.72198 0.73091 0.73873 1.93505 1.67141 1.77183 1.58882 1.93512 1.86237 1.31786 1.86238 1.57568 1.23760 1.36963 1.64813 1.21618 0.99376 0.85598 0.93732 1.21898 0.96330 0.98223 0.99979 1.21395 0.97461 0.97591 0.97831 1.18963 0.92186 0.93449 0.93291 0.98168 1.21475 1.02219 0.95757 1.38086 0.92603 1.25610 1.00681 0.96087 0.95513 1.69999 1.30729 1.12944 1.41465 0.85763 0.79302 0.78968 0.78493 1.19889 1.21192 1.19708 1.21644 0.87405 0.91132 0.98786 1.20979 0.92964 0.91485 0.99948 0.92321 0.93309 0.90537 0.90213 0.89170 0.82225 0.82890 0.85047 0.88244 0.89885 0.93310 0.89952 0.91993 0.94756 0.93124 0.91362 0.90988 0.83800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.89 71.98 0.71 -1.38 16 2 C -0.08 -1.40 6.07 29.85 0.18 -1.22 16 3 C -0.11 -2.50 5.13 -19.86 -0.10 -2.60 16 4 C -0.06 -1.41 9.70 22.27 0.22 -1.20 16 5 C -0.14 -3.60 10.05 22.27 0.22 -3.38 16 6 C -0.04 -1.39 9.52 22.27 0.21 -1.18 16 7 C -0.68 -21.68 5.97 22.27 0.13 -21.55 16 8 S 2.70 93.63 5.69 -56.49 -0.32 93.31 16 9 O -0.98 -34.58 16.01 -128.00 -2.05 -36.63 16 10 O -0.99 -39.02 15.99 -128.00 -2.05 -41.06 16 11 N -0.99 -35.21 3.28 -512.29 -1.68 -36.90 16 12 C 0.12 3.76 6.38 86.37 0.55 4.31 16 13 C -0.13 -4.34 6.08 30.67 0.19 -4.15 16 14 C -0.10 -4.64 4.96 30.62 0.15 -4.49 16 15 C 0.04 1.96 2.27 -11.32 -0.03 1.94 16 16 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 17 C -0.54 -28.45 8.56 25.60 0.22 -28.23 16 18 H 0.06 2.90 7.74 -2.91 -0.02 2.87 16 19 C 0.02 1.09 5.30 84.65 0.45 1.54 16 20 N -0.91 -50.77 11.31 21.45 0.24 -50.53 16 21 Si 0.95 42.47 29.54 68.60 2.03 44.50 16 22 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 23 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 24 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 25 C 0.13 5.52 5.63 86.51 0.49 6.01 16 26 C -0.03 -0.96 9.18 22.27 0.20 -0.75 16 27 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 29 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.08 1.26 8.08 -2.39 -0.02 1.24 16 31 H 0.09 1.22 8.09 -2.39 -0.02 1.20 16 32 H 0.16 2.37 8.06 -2.91 -0.02 2.34 16 33 H 0.15 3.06 8.06 -2.91 -0.02 3.04 16 34 H 0.13 4.14 7.62 -2.91 -0.02 4.12 16 35 H 0.10 2.63 7.13 -2.39 -0.02 2.61 16 36 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 39 H 0.06 3.16 6.04 -2.39 -0.01 3.14 16 40 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.26 13.88 8.31 -92.71 -0.77 13.11 16 42 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 43 H 0.07 2.96 7.12 -2.39 -0.02 2.94 16 44 H 0.14 3.58 7.62 -2.91 -0.02 3.56 16 Total: -1.00 -65.84 364.97 0.94 -64.90 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: 0.97 Total: 18.72 kcal Atomic # 6 Polarization: -60.12 SS G_CDS: 3.80 Total: -56.32 kcal Atomic # 7 Polarization: -85.98 SS G_CDS: -1.44 Total: -87.42 kcal Atomic # 8 Polarization: -73.60 SS G_CDS: -4.10 Total: -77.69 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Atomic # 16 Polarization: 93.63 SS G_CDS: -0.32 Total: 93.31 kcal Total: -65.84 0.94 -64.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594801538.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.374 kcal (2) G-P(sol) polarization free energy of solvation -65.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds