Wall clock time and date at job start Tue Mar 31 2020 13:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47174 * 2 1 4 4 C 1.38255 * 119.99820 * 89.99734 * 3 2 1 5 5 C 1.38220 * 119.99681 * 179.97438 * 4 3 2 6 6 C 1.38254 * 120.00045 * 0.07174 * 5 4 3 7 7 C 1.38204 * 119.99866 * 359.90929 * 6 5 4 8 8 S 1.76205 * 119.99958 * 180.02562 * 7 6 5 9 9 O 1.42102 * 106.40092 * 23.51095 * 8 7 6 10 10 O 1.42096 * 106.40409 * 156.43573 * 8 7 6 11 11 N 1.65601 * 107.21415 * 269.97579 * 8 7 6 12 12 C 1.46928 * 120.62948 * 269.71394 * 11 8 7 13 13 C 1.53629 * 108.54045 * 126.37303 * 12 11 8 14 14 C 1.53036 * 109.24355 * 54.85802 * 13 12 11 15 15 C 1.53042 * 109.53707 * 298.51270 * 14 13 12 16 16 H 1.09003 * 109.49738 * 301.41385 * 15 14 13 17 17 C 1.50707 * 109.49729 * 181.31632 * 15 14 13 18 18 H 1.08000 * 120.00082 * 240.15922 * 17 15 14 19 19 C 1.37877 * 119.99622 * 60.15946 * 17 15 14 20 20 N 1.31511 * 120.00501 * 359.97438 * 19 17 15 21 21 Si 1.86797 * 119.99589 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.47155 * 59.99892 * 21 19 17 23 23 H 1.48500 * 109.47431 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47601 * 300.00255 * 21 19 17 25 25 C 1.46926 * 120.63322 * 90.00273 * 11 8 7 26 26 C 1.38207 * 119.99822 * 269.97497 * 3 2 1 27 27 H 1.09001 * 109.47321 * 300.00573 * 1 2 3 28 28 H 1.09001 * 109.47008 * 59.99990 * 1 2 3 29 29 H 1.08997 * 109.47513 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47576 * 239.99422 * 2 1 3 31 31 H 1.09001 * 109.46567 * 119.99376 * 2 1 3 32 32 H 1.08000 * 120.00604 * 359.70329 * 4 3 2 33 33 H 1.08002 * 119.99604 * 180.02562 * 5 4 3 34 34 H 1.08005 * 119.99947 * 179.97438 * 6 5 4 35 35 H 1.09003 * 109.58938 * 246.20439 * 12 11 8 36 36 H 1.08996 * 109.58634 * 6.63456 * 12 11 8 37 37 H 1.09000 * 109.63061 * 294.86395 * 13 12 11 38 38 H 1.08995 * 109.45676 * 174.74564 * 13 12 11 39 39 H 1.08995 * 109.46193 * 178.49086 * 14 13 12 40 40 H 1.08997 * 109.44808 * 58.52054 * 14 13 12 41 41 H 0.96995 * 120.00440 * 179.97438 * 20 19 17 42 42 H 1.09004 * 109.58647 * 353.36621 * 25 11 8 43 43 H 1.09000 * 109.59431 * 113.79359 * 25 11 8 44 44 H 1.07991 * 120.00421 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1973 5 6 2.7239 3.3755 1.1973 6 6 2.9535 4.0275 0.0000 7 6 2.7236 3.3758 -1.1969 8 16 3.0168 4.2066 -2.7229 9 8 3.9566 5.2357 -2.4454 10 8 3.2374 3.1940 -3.6951 11 7 1.6065 4.9635 -3.1477 12 6 0.6079 4.2752 -3.9771 13 6 -0.7469 4.3272 -3.2545 14 6 -1.0922 5.7833 -2.9344 15 6 -0.0276 6.3692 -2.0040 16 1 0.0222 5.7775 -1.0899 17 6 -0.3856 7.7930 -1.6635 18 1 0.2885 8.5960 -1.9224 19 6 -1.5738 8.0703 -1.0214 20 7 -2.3950 7.0925 -0.7065 21 14 -2.0172 9.8349 -0.5987 22 1 -2.0863 10.6400 -1.8447 23 1 -3.3357 9.8642 0.0838 24 1 -0.9819 10.4036 0.3012 25 6 1.3328 6.3383 -2.7077 26 6 2.2632 2.0721 -1.1969 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8898 31 1 1.8932 -0.5138 0.8901 32 1 2.0781 1.5651 2.1327 33 1 2.9043 3.8845 2.1327 34 1 3.3135 5.0458 0.0000 35 1 0.5291 4.7735 -4.9433 36 1 0.9065 3.2370 -4.1223 37 1 -0.6903 3.7547 -2.3287 38 1 -1.5179 3.9033 -3.8977 39 1 -2.0654 5.8267 -2.4455 40 1 -1.1240 6.3603 -3.8586 41 1 -3.2307 7.2875 -0.2545 42 1 2.1098 6.6619 -2.0152 43 1 1.3119 7.0016 -3.5725 44 1 2.0832 1.5631 -2.1322 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594801539.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:08 Heat of formation + Delta-G solvation = -66.366068 kcal Electronic energy + Delta-G solvation = -26423.995412 eV Core-core repulsion = 22853.350089 eV Total energy + Delta-G solvation = -3570.645322 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -39.37075 -37.71586 -37.00478 -35.57049 -34.24927 -33.33069 -31.18539 -31.10259 -30.11601 -29.45125 -25.13954 -24.07292 -23.66540 -23.13128 -21.69386 -21.30961 -19.47916 -18.30788 -17.59142 -17.07558 -16.18248 -15.97518 -15.90746 -15.14275 -14.64711 -14.61152 -13.97860 -13.81337 -13.60312 -13.54942 -13.24927 -13.21805 -12.80093 -12.73740 -12.29715 -12.18719 -12.17166 -11.93624 -11.80893 -11.71456 -11.31667 -11.26298 -10.98656 -10.94516 -10.87027 -10.76978 -10.56246 -10.27804 -9.96088 -9.82516 -9.47697 -9.20151 -8.88084 -8.76869 -8.46555 -8.17370 -6.04132 -4.11579 0.64626 0.97795 1.34299 3.21334 3.29190 3.33944 3.37246 3.60906 4.06160 4.38967 4.45427 4.67949 4.82316 4.98403 5.05096 5.20527 5.22491 5.27128 5.27177 5.42896 5.46366 5.66418 5.67145 5.76011 5.79528 5.92639 5.96632 5.99655 6.13385 6.16182 6.24778 6.30431 6.31861 6.44282 6.46621 6.59384 6.63367 6.85891 6.89659 7.00657 7.19129 7.41772 7.67876 7.90798 8.06334 8.36599 8.91931 9.53567 11.01035 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012243 B = 0.004864 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.558997 B = 5754.989600 C = 6409.139687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.083 4.083 3 C -0.107 4.107 4 C -0.067 4.067 5 C -0.136 4.136 6 C -0.017 4.017 7 C -0.666 4.666 8 S 2.688 3.312 9 O -0.961 6.961 10 O -0.969 6.969 11 N -0.990 5.990 12 C 0.125 3.875 13 C -0.134 4.134 14 C -0.109 4.109 15 C 0.040 3.960 16 H 0.030 0.970 17 C -0.517 4.517 18 H 0.057 0.943 19 C 0.065 3.935 20 N -0.888 5.888 21 Si 0.891 3.109 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 C 0.125 3.875 26 C -0.019 4.019 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.126 0.874 33 H 0.131 0.869 34 H 0.140 0.860 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.094 0.906 40 H 0.036 0.964 41 H 0.261 0.739 42 H 0.075 0.925 43 H 0.064 0.936 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.079 -12.505 0.985 13.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.121 4.121 3 C -0.108 4.108 4 C -0.085 4.085 5 C -0.155 4.155 6 C -0.036 4.036 7 C -0.753 4.753 8 S 2.779 3.221 9 O -0.951 6.951 10 O -0.959 6.959 11 N -0.829 5.829 12 C 0.000 4.000 13 C -0.173 4.173 14 C -0.148 4.148 15 C 0.020 3.980 16 H 0.048 0.952 17 C -0.555 4.555 18 H 0.076 0.924 19 C -0.137 4.137 20 N -0.527 5.527 21 Si 0.719 3.281 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.203 1.203 25 C 0.002 3.998 26 C -0.039 4.039 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.144 0.856 33 H 0.149 0.851 34 H 0.157 0.843 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.112 0.888 40 H 0.055 0.945 41 H 0.070 0.930 42 H 0.094 0.906 43 H 0.082 0.918 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.689 -12.528 0.603 14.215 hybrid contribution -0.853 0.782 1.027 1.547 sum 5.837 -11.746 1.630 13.217 Atomic orbital electron populations 1.21778 0.94397 1.01713 1.02794 1.20543 0.96485 0.92119 1.02906 1.19975 1.00791 0.96880 0.93180 1.21285 0.95017 0.94566 0.97612 1.21264 1.00753 0.95093 0.98342 1.20937 0.92254 0.99273 0.91142 1.31130 1.16095 1.07160 1.20868 1.01978 0.73312 0.73096 0.73695 1.93555 1.59143 1.56660 1.85746 1.93527 1.84583 1.59777 1.58035 1.57617 1.36701 1.24613 1.63980 1.21520 0.89019 0.95896 0.93592 1.22078 0.94832 1.00938 0.99455 1.21570 1.03702 0.90673 0.98805 1.18977 0.88635 0.96500 0.93891 0.95187 1.21072 1.04269 0.92233 1.37968 0.92430 1.24921 0.96326 0.96968 0.95457 1.69862 1.10873 1.31074 1.40857 0.86674 0.77549 0.85195 0.78660 1.20237 1.21389 1.20257 1.21859 1.00656 0.78302 0.99017 1.20719 0.92477 0.92121 0.98536 0.92400 0.92143 0.92359 0.90821 0.91017 0.85630 0.85132 0.84270 0.91354 0.90690 0.92517 0.92639 0.88805 0.94535 0.92956 0.90624 0.91769 0.84740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.89 37.16 0.37 -1.08 16 2 C -0.08 -0.81 6.06 -27.88 -0.17 -0.98 16 3 C -0.11 -1.36 5.13 -104.63 -0.54 -1.89 16 4 C -0.07 -0.81 9.70 -39.58 -0.38 -1.19 16 5 C -0.14 -1.80 10.05 -39.58 -0.40 -2.20 16 6 C -0.02 -0.26 9.52 -39.59 -0.38 -0.64 16 7 C -0.67 -10.64 5.97 -39.58 -0.24 -10.88 16 8 S 2.69 46.52 5.69 -107.50 -0.61 45.91 16 9 O -0.96 -18.59 16.00 -57.17 -0.91 -19.51 16 10 O -0.97 -17.53 15.99 -57.17 -0.91 -18.45 16 11 N -0.99 -17.64 3.28 -113.27 -0.37 -18.01 16 12 C 0.13 2.03 6.41 -3.48 -0.02 2.01 16 13 C -0.13 -2.37 6.10 -26.39 -0.16 -2.53 16 14 C -0.11 -2.40 4.96 -26.69 -0.13 -2.53 16 15 C 0.04 0.93 2.25 -91.65 -0.21 0.72 16 16 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 17 C -0.52 -13.40 8.56 -34.44 -0.29 -13.69 16 18 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 19 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 20 N -0.89 -24.21 11.32 55.43 0.63 -23.59 16 21 Si 0.89 20.56 29.54 -169.99 -5.02 15.54 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 23 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 25 C 0.13 2.52 5.60 -3.71 -0.02 2.50 16 26 C -0.02 -0.28 9.18 -39.58 -0.36 -0.64 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 31 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 32 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 33 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 34 H 0.14 2.08 7.62 -52.48 -0.40 1.68 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.07 1.07 7.12 -51.93 -0.37 0.70 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.09 2.33 6.05 -51.93 -0.31 2.02 16 40 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 42 H 0.08 1.50 7.13 -51.93 -0.37 1.13 16 43 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 44 H 0.13 1.76 7.62 -52.49 -0.40 1.36 16 LS Contribution 364.98 15.07 5.50 5.50 Total: -1.00 -30.28 364.98 -11.62 -41.90 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -6.89 Total: 2.11 kcal Atomic # 6 Polarization: -28.38 SS G_CDS: -3.03 Total: -31.41 kcal Atomic # 7 Polarization: -41.85 SS G_CDS: 0.26 Total: -41.60 kcal Atomic # 8 Polarization: -36.13 SS G_CDS: -1.83 Total: -37.95 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 16 Polarization: 46.52 SS G_CDS: -0.61 Total: 45.91 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.28 -11.62 -41.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594801539.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.466 kcal (2) G-P(sol) polarization free energy of solvation -30.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds