Wall clock time and date at job start Tue Mar 31 2020 13:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50703 * 109.46955 * 2 1 4 4 C 1.38251 * 120.00014 * 266.18962 * 3 2 1 5 5 C 1.38219 * 120.00028 * 179.97438 * 4 3 2 6 6 C 1.38255 * 119.99871 * 0.02562 * 5 4 3 7 7 C 1.38216 * 120.00093 * 359.74577 * 6 5 4 8 8 C 1.38210 * 119.99960 * 86.17290 * 3 2 1 9 9 S 1.76205 * 120.00124 * 359.97438 * 8 3 2 10 10 O 1.42108 * 106.39744 * 52.76997 * 9 8 3 11 11 O 1.42098 * 106.40267 * 279.85192 * 9 8 3 12 12 N 1.65592 * 107.22104 * 166.30776 * 9 8 3 13 13 C 1.46932 * 120.63014 * 95.34734 * 12 9 8 14 14 C 1.53189 * 108.77453 * 126.36938 * 13 12 9 15 15 C 1.53042 * 109.31474 * 54.63700 * 14 13 12 16 16 C 1.53042 * 109.53756 * 298.63725 * 15 14 13 17 17 H 1.09009 * 109.49675 * 301.37762 * 16 15 14 18 18 C 1.50695 * 109.49912 * 181.31431 * 16 15 14 19 19 H 1.08001 * 120.00361 * 239.99644 * 18 16 15 20 20 C 1.37882 * 119.99873 * 59.99878 * 18 16 15 21 21 N 1.31513 * 120.00019 * 359.97438 * 20 18 16 22 22 Si 1.86806 * 119.99841 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47167 * 59.99877 * 22 20 18 24 24 H 1.48503 * 109.47086 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.46922 * 299.99722 * 22 20 18 26 26 C 1.46925 * 120.63448 * 275.07027 * 12 9 8 27 27 H 1.09002 * 109.46939 * 295.28548 * 1 2 3 28 28 H 1.08995 * 109.46857 * 55.28536 * 1 2 3 29 29 H 1.09001 * 109.46830 * 175.28384 * 1 2 3 30 30 H 1.08998 * 109.47049 * 240.00606 * 2 1 3 31 31 H 1.08998 * 109.47367 * 120.00089 * 2 1 3 32 32 H 1.07996 * 120.00752 * 0.02562 * 4 3 2 33 33 H 1.08001 * 120.00302 * 180.02562 * 5 4 3 34 34 H 1.08000 * 120.00210 * 180.02562 * 6 5 4 35 35 H 1.07993 * 120.00319 * 180.27622 * 7 6 5 36 36 H 1.08994 * 109.58419 * 246.15948 * 13 12 9 37 37 H 1.09001 * 109.58282 * 6.58079 * 13 12 9 38 38 H 1.08993 * 109.49756 * 174.58954 * 14 13 12 39 39 H 1.08999 * 109.49646 * 294.68309 * 14 13 12 40 40 H 1.09003 * 109.45790 * 58.65056 * 15 14 13 41 41 H 1.08990 * 109.46565 * 178.62711 * 15 14 13 42 42 H 0.97005 * 119.99910 * 179.97438 * 21 20 18 43 43 H 1.09002 * 109.58254 * 353.41915 * 26 12 9 44 44 H 1.08998 * 109.58760 * 113.83946 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3378 2.0461 -1.1946 5 6 2.7979 3.3494 -1.1947 6 6 2.9533 4.0276 0.0000 7 6 2.6435 3.4042 1.1940 8 6 2.1873 2.0990 1.1943 9 16 1.7970 1.3026 2.7168 10 8 2.5168 0.0773 2.7247 11 8 0.3849 1.3753 2.8572 12 7 2.4361 2.2281 3.9322 13 6 1.6100 3.2241 4.6281 14 6 1.6889 2.9635 6.1356 15 6 3.1561 2.9493 6.5707 16 6 3.8939 1.8211 5.8462 17 1 3.4174 0.8681 6.0764 18 6 5.3308 1.7874 6.2993 19 1 6.1265 1.9256 5.5824 20 6 5.6295 1.5799 7.6293 21 7 4.6605 1.4120 8.5025 22 14 7.4106 1.5389 8.1911 23 1 8.0591 2.8371 7.8760 24 1 7.4621 1.3032 9.6564 25 1 8.1263 0.4442 7.4878 26 6 3.8384 2.0647 4.3392 27 1 -0.3633 0.4390 0.9292 28 1 -0.3633 0.5852 -0.8447 29 1 -0.3633 -1.0242 -0.0845 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 2.2160 1.5165 -2.1279 33 1 3.0362 3.8380 -2.1279 34 1 3.3125 5.0462 0.0000 35 1 2.7606 3.9354 2.1269 36 1 1.9830 4.2247 4.4102 37 1 0.5755 3.1371 4.2959 38 1 1.1588 3.7522 6.6694 39 1 1.2328 1.9999 6.3626 40 1 3.6182 3.9044 6.3209 41 1 3.2142 2.7883 7.6471 42 1 4.8707 1.2658 9.4381 43 1 4.2737 1.2131 3.8164 44 1 4.3968 2.9690 4.0972 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594807281.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:11 Heat of formation + Delta-G solvation = -58.961088 kcal Electronic energy + Delta-G solvation = -26425.276506 eV Core-core repulsion = 22854.952287 eV Total energy + Delta-G solvation = -3570.324218 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.54711 -37.79949 -36.93279 -35.74157 -34.28998 -33.31234 -31.49248 -30.98884 -30.12522 -29.54458 -25.12796 -24.26552 -23.58179 -23.30019 -21.70204 -21.30162 -19.57264 -18.60846 -17.42747 -17.20510 -16.21913 -15.98987 -15.71595 -15.38943 -14.76975 -14.55896 -14.13109 -14.00216 -13.82884 -13.39272 -13.36866 -13.21507 -12.83625 -12.69922 -12.56326 -12.25857 -12.12665 -11.99696 -11.88963 -11.71387 -11.39212 -11.13735 -10.97870 -10.89891 -10.85003 -10.73037 -10.41199 -10.23102 -9.94193 -9.81708 -9.43455 -9.38580 -8.94997 -8.85209 -8.47516 -8.20914 -6.00561 -4.08141 0.64594 0.77064 1.16141 3.16343 3.31698 3.36633 3.37885 3.39421 3.91112 4.42110 4.43377 4.59857 4.72792 4.84507 4.98630 5.08902 5.17520 5.23030 5.26741 5.30355 5.40364 5.61098 5.65555 5.72902 5.77398 5.81005 5.90497 5.97382 6.01388 6.18738 6.19031 6.21587 6.25442 6.32019 6.45473 6.60549 6.62037 6.72444 6.86678 6.99615 7.21219 7.43300 7.70857 7.95909 8.09594 8.38871 8.94863 9.56562 11.04895 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018399 B = 0.003975 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.450821 B = 7043.207550 C = 7323.965554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.140 4.140 3 C 0.020 3.980 4 C -0.140 4.140 5 C -0.071 4.071 6 C -0.145 4.145 7 C -0.025 4.025 8 C -0.667 4.667 9 S 2.687 3.313 10 O -0.952 6.952 11 O -0.961 6.961 12 N -0.991 5.991 13 C 0.119 3.881 14 C -0.131 4.131 15 C -0.110 4.110 16 C 0.042 3.958 17 H 0.033 0.967 18 C -0.516 4.516 19 H 0.057 0.943 20 C 0.064 3.936 21 N -0.887 5.887 22 Si 0.893 3.107 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.277 1.277 26 C 0.124 3.876 27 H 0.075 0.925 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.103 0.897 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.130 0.870 35 H 0.137 0.863 36 H 0.062 0.938 37 H 0.082 0.918 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.036 0.964 41 H 0.096 0.904 42 H 0.261 0.739 43 H 0.078 0.922 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.747 4.676 -16.836 18.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.177 4.177 3 C 0.019 3.981 4 C -0.158 4.158 5 C -0.089 4.089 6 C -0.163 4.163 7 C -0.044 4.044 8 C -0.752 4.752 9 S 2.777 3.223 10 O -0.942 6.942 11 O -0.952 6.952 12 N -0.832 5.832 13 C -0.006 4.006 14 C -0.170 4.170 15 C -0.149 4.149 16 C 0.022 3.978 17 H 0.051 0.949 18 C -0.555 4.555 19 H 0.075 0.925 20 C -0.137 4.137 21 N -0.526 5.526 22 Si 0.721 3.279 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.202 1.202 26 C 0.001 3.999 27 H 0.094 0.906 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.107 0.893 31 H 0.121 0.879 32 H 0.147 0.853 33 H 0.145 0.855 34 H 0.148 0.852 35 H 0.155 0.845 36 H 0.080 0.920 37 H 0.101 0.899 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.055 0.945 41 H 0.114 0.886 42 H 0.071 0.929 43 H 0.096 0.904 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.242 3.884 -16.589 18.513 hybrid contribution 1.393 0.661 -0.221 1.557 sum -5.850 4.546 -16.810 18.370 Atomic orbital electron populations 1.21980 0.93481 1.02851 1.03835 1.21318 0.97511 0.92527 1.06357 1.19462 0.91832 0.95024 0.91796 1.21127 1.01669 0.95546 0.97498 1.21387 0.94977 0.94263 0.98272 1.21251 1.01986 1.00557 0.92539 1.20958 0.92039 0.92050 0.99349 1.31087 1.16481 1.07162 1.20462 1.02241 0.73605 0.73796 0.72660 1.93560 1.73818 1.40482 1.86366 1.93538 1.29080 1.86627 1.85919 1.57545 1.22298 1.55153 1.48203 1.21534 0.93956 0.90685 0.94467 1.21954 1.00721 1.01162 0.93189 1.21601 0.90436 0.98374 1.04440 1.18862 0.96125 0.95496 0.87359 0.94919 1.21036 0.91413 1.49735 0.93326 0.92493 1.24931 0.97109 0.94933 0.96761 1.69864 1.31242 1.48834 1.02647 0.86652 0.85237 0.78552 0.77496 1.20320 1.21332 1.20224 1.21808 0.77008 1.00690 1.00441 0.90596 0.92197 0.91400 0.89260 0.87900 0.85294 0.85455 0.85222 0.84475 0.92018 0.89926 0.92362 0.92206 0.94549 0.88620 0.92884 0.90368 0.92376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 9.89 37.16 0.37 -1.60 16 2 C -0.14 -1.81 5.53 -27.88 -0.15 -1.96 16 3 C 0.02 0.28 5.13 -104.63 -0.54 -0.26 16 4 C -0.14 -1.56 9.69 -39.58 -0.38 -1.94 16 5 C -0.07 -0.71 10.05 -39.58 -0.40 -1.11 16 6 C -0.14 -1.58 10.05 -39.58 -0.40 -1.98 16 7 C -0.03 -0.33 9.57 -39.58 -0.38 -0.71 16 8 C -0.67 -10.04 5.83 -39.58 -0.23 -10.27 16 9 S 2.69 47.27 4.79 -107.50 -0.51 46.76 16 10 O -0.95 -19.21 14.43 -57.17 -0.83 -20.03 16 11 O -0.96 -17.81 14.65 -57.17 -0.84 -18.65 16 12 N -0.99 -17.62 2.31 -113.77 -0.26 -17.88 16 13 C 0.12 1.91 6.31 -3.71 -0.02 1.88 16 14 C -0.13 -2.40 6.08 -26.61 -0.16 -2.56 16 15 C -0.11 -2.45 4.96 -26.69 -0.13 -2.58 16 16 C 0.04 1.01 2.24 -91.88 -0.21 0.80 16 17 H 0.03 0.89 8.14 -51.92 -0.42 0.46 16 18 C -0.52 -13.65 8.56 -34.44 -0.29 -13.94 16 19 H 0.06 1.46 7.75 -52.49 -0.41 1.06 16 20 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 21 N -0.89 -24.70 11.31 55.43 0.63 -24.08 16 22 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 24 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 26 C 0.12 2.50 5.65 -3.94 -0.02 2.47 16 27 H 0.08 1.07 6.17 -51.93 -0.32 0.75 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.09 0.90 8.06 -51.93 -0.42 0.48 16 31 H 0.10 1.55 5.22 -51.93 -0.27 1.28 16 32 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 33 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 35 H 0.14 1.62 7.14 -52.49 -0.38 1.25 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.08 1.23 6.80 -51.93 -0.35 0.87 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.10 2.41 6.04 -51.93 -0.31 2.10 16 42 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 43 H 0.08 1.60 7.05 -51.93 -0.37 1.24 16 44 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 355.04 15.07 5.35 5.35 Total: -1.00 -31.02 355.04 -11.14 -42.16 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -6.61 Total: 2.71 kcal Atomic # 6 Polarization: -29.07 SS G_CDS: -3.05 Total: -32.12 kcal Atomic # 7 Polarization: -42.32 SS G_CDS: 0.36 Total: -41.96 kcal Atomic # 8 Polarization: -37.02 SS G_CDS: -1.66 Total: -38.68 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: 47.27 SS G_CDS: -0.51 Total: 46.76 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.02 -11.14 -42.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594807281.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.803 kcal (2) G-P(sol) polarization free energy of solvation -31.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds