Wall clock time and date at job start Tue Mar 31 2020 13:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.47222 * 2 1 4 4 C 1.38256 * 119.99772 * 265.95376 * 3 2 1 5 5 C 1.38210 * 119.99850 * 179.97438 * 4 3 2 6 6 C 1.38255 * 120.00109 * 359.97438 * 5 4 3 7 7 C 1.38213 * 120.00135 * 359.97427 * 6 5 4 8 8 C 1.38211 * 120.00097 * 85.83806 * 3 2 1 9 9 S 1.76198 * 119.99885 * 0.06644 * 8 3 2 10 10 O 1.42099 * 106.40442 * 279.88866 * 9 8 3 11 11 O 1.42095 * 106.40454 * 52.81759 * 9 8 3 12 12 N 1.65609 * 107.21573 * 166.35313 * 9 8 3 13 13 C 1.46928 * 120.62791 * 96.25320 * 12 9 8 14 14 C 1.53188 * 108.77393 * 233.58210 * 13 12 9 15 15 C 1.53032 * 109.31705 * 305.36874 * 14 13 12 16 16 C 1.53046 * 109.54010 * 61.36452 * 15 14 13 17 17 H 1.08999 * 109.49351 * 58.58266 * 16 15 14 18 18 C 1.50697 * 109.50158 * 178.65249 * 16 15 14 19 19 H 1.07996 * 120.00236 * 119.99681 * 18 16 15 20 20 C 1.37880 * 119.99653 * 300.00171 * 18 16 15 21 21 N 1.31508 * 120.00342 * 359.97438 * 20 18 16 22 22 Si 1.86802 * 119.99867 * 179.97438 * 20 18 16 23 23 H 1.48509 * 109.47063 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47254 * 119.99734 * 22 20 18 25 25 H 1.48493 * 109.47072 * 240.00148 * 22 20 18 26 26 C 1.46922 * 120.62892 * 275.97549 * 12 9 8 27 27 H 1.09009 * 109.46872 * 65.53613 * 1 2 3 28 28 H 1.08993 * 109.47256 * 185.53304 * 1 2 3 29 29 H 1.09001 * 109.47297 * 305.53590 * 1 2 3 30 30 H 1.08999 * 109.47121 * 239.99680 * 2 1 3 31 31 H 1.08999 * 109.46921 * 119.99316 * 2 1 3 32 32 H 1.08003 * 119.99974 * 0.02562 * 4 3 2 33 33 H 1.08004 * 120.00146 * 179.97438 * 5 4 3 34 34 H 1.08002 * 120.00018 * 180.02562 * 6 5 4 35 35 H 1.07999 * 119.99737 * 179.72209 * 7 6 5 36 36 H 1.09000 * 109.58824 * 353.37523 * 13 12 9 37 37 H 1.09006 * 109.58006 * 113.80024 * 13 12 9 38 38 H 1.09008 * 109.49679 * 65.32341 * 14 13 12 39 39 H 1.08999 * 109.49487 * 185.41424 * 14 13 12 40 40 H 1.09002 * 109.46001 * 181.38320 * 15 14 13 41 41 H 1.09000 * 109.46150 * 301.36012 * 15 14 13 42 42 H 0.97004 * 120.00556 * 180.02562 * 21 20 18 43 43 H 1.09007 * 109.58254 * 246.20136 * 26 12 9 44 44 H 1.08997 * 109.58726 * 6.62338 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3425 2.0444 -1.1944 5 6 2.8027 3.3476 -1.1944 6 6 2.9525 4.0279 -0.0002 7 6 2.6415 3.4049 1.1938 8 6 2.1809 2.1013 1.1938 9 16 1.7844 1.3071 2.7158 10 8 0.3715 1.3774 2.8490 11 8 2.5066 0.0834 2.7299 12 7 2.4156 2.2364 3.9326 13 6 1.5786 3.2182 4.6357 14 6 2.2712 4.5836 4.5839 15 6 3.6901 4.4529 5.1420 16 6 4.4904 3.4725 4.2814 17 1 4.5151 3.8287 3.2516 18 6 5.8971 3.3697 4.8120 19 1 6.2792 2.4171 5.1481 20 6 6.6963 4.4918 4.8684 21 7 6.2312 5.6517 4.4587 22 14 8.4398 4.3646 5.5268 23 1 8.7190 2.9602 5.9206 24 1 9.3987 4.7837 4.4731 25 1 8.5876 5.2488 6.7106 26 6 3.8215 2.0905 4.3336 27 1 -0.3633 0.4256 -0.9355 28 1 -0.3633 -1.0228 0.0991 29 1 -0.3634 0.5973 0.8363 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 2.2243 1.5133 -2.1274 33 1 3.0453 3.8346 -2.1274 34 1 3.3117 5.0464 -0.0003 35 1 2.7628 3.9349 2.1269 36 1 0.6052 3.2834 4.1495 37 1 1.4510 2.9124 5.6742 38 1 2.3168 4.9294 3.5511 39 1 1.7090 5.2996 5.1833 40 1 4.1767 5.4282 5.1290 41 1 3.6449 4.0833 6.1664 42 1 6.7935 6.4411 4.4981 43 1 3.8729 1.6946 5.3479 44 1 4.3284 1.4114 3.6480 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594807282.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:16 Heat of formation + Delta-G solvation = -59.307512 kcal Electronic energy + Delta-G solvation = -26875.504958 eV Core-core repulsion = 23305.165717 eV Total energy + Delta-G solvation = -3570.339240 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.36339 -37.88591 -36.93142 -35.73376 -34.16411 -33.34505 -31.20442 -31.13814 -30.14802 -29.38462 -25.17495 -24.16245 -23.58426 -23.12011 -21.77179 -21.22503 -19.54164 -18.37369 -17.77884 -16.99122 -16.25118 -15.85773 -15.70021 -15.31006 -14.69292 -14.46736 -14.13351 -13.87974 -13.68533 -13.44990 -13.31836 -13.12821 -12.85906 -12.74953 -12.43509 -12.25506 -12.03356 -11.99963 -11.81257 -11.71510 -11.37030 -11.04746 -11.00575 -10.93259 -10.83392 -10.72740 -10.36228 -10.29189 -10.00295 -9.84388 -9.45142 -9.23561 -8.90920 -8.72900 -8.51815 -8.23214 -6.08048 -4.14742 0.70985 0.96105 1.38981 3.16946 3.25097 3.34037 3.38445 3.58957 3.90947 4.37523 4.57224 4.74096 4.87900 4.97006 5.10555 5.14868 5.23544 5.24707 5.34619 5.47076 5.51726 5.61880 5.74380 5.78957 5.85309 5.90035 5.94653 6.03174 6.19344 6.21399 6.25980 6.28401 6.39068 6.40489 6.44713 6.55326 6.58966 6.79458 6.94207 6.95273 7.11970 7.34730 7.64247 7.84887 8.01468 8.32627 8.88611 9.50702 10.97316 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015883 B = 0.004781 C = 0.004358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.474718 B = 5855.139850 C = 6423.287299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.137 4.137 3 C 0.016 3.984 4 C -0.143 4.143 5 C -0.069 4.069 6 C -0.140 4.140 7 C -0.022 4.022 8 C -0.668 4.668 9 S 2.690 3.310 10 O -0.965 6.965 11 O -0.960 6.960 12 N -0.993 5.993 13 C 0.120 3.880 14 C -0.138 4.138 15 C -0.112 4.112 16 C 0.037 3.963 17 H 0.032 0.968 18 C -0.515 4.515 19 H 0.059 0.941 20 C 0.065 3.935 21 N -0.888 5.888 22 Si 0.891 3.109 23 H -0.272 1.272 24 H -0.285 1.285 25 H -0.284 1.284 26 C 0.124 3.876 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.100 0.900 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.132 0.868 35 H 0.148 0.852 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.096 0.904 41 H 0.038 0.962 42 H 0.260 0.740 43 H 0.066 0.934 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.000 -3.987 -8.205 13.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.175 4.175 3 C 0.015 3.985 4 C -0.162 4.162 5 C -0.088 4.088 6 C -0.158 4.158 7 C -0.040 4.040 8 C -0.754 4.754 9 S 2.781 3.219 10 O -0.955 6.955 11 O -0.950 6.950 12 N -0.833 5.833 13 C -0.006 4.006 14 C -0.177 4.177 15 C -0.150 4.150 16 C 0.017 3.983 17 H 0.050 0.950 18 C -0.554 4.554 19 H 0.077 0.923 20 C -0.137 4.137 21 N -0.527 5.527 22 Si 0.719 3.281 23 H -0.197 1.197 24 H -0.211 1.211 25 H -0.211 1.211 26 C 0.000 4.000 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.106 0.894 31 H 0.118 0.882 32 H 0.145 0.855 33 H 0.145 0.855 34 H 0.150 0.850 35 H 0.165 0.835 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.114 0.886 41 H 0.057 0.943 42 H 0.070 0.930 43 H 0.085 0.915 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.413 -4.589 -8.132 13.987 hybrid contribution 1.472 0.750 -0.263 1.673 sum -8.941 -3.839 -8.395 12.852 Atomic orbital electron populations 1.21979 0.93655 1.02998 1.03490 1.21279 0.97346 0.92738 1.06100 1.19397 0.92412 0.94805 0.91897 1.21066 1.02166 0.95594 0.97330 1.21392 0.94845 0.94229 0.98289 1.21302 1.01260 1.00840 0.92436 1.21300 0.90617 0.91996 1.00130 1.30866 1.17372 1.07279 1.19895 1.02055 0.73415 0.73648 0.72769 1.93536 1.29089 1.86778 1.86091 1.93535 1.73906 1.41033 1.86531 1.57572 1.21585 1.55217 1.48946 1.21523 0.92680 0.88965 0.97397 1.22097 0.99528 0.94893 1.01185 1.21612 0.91255 1.04245 0.97849 1.19124 0.93515 0.88911 0.96728 0.95002 1.21133 0.96908 0.94915 1.42420 0.92278 1.24913 0.98248 0.95361 0.95145 1.69863 1.36284 0.99252 1.47319 0.86551 0.84712 0.78231 0.78603 1.19689 1.21088 1.21052 1.21977 0.76587 1.01183 1.00216 0.92164 0.91578 0.90662 0.89360 0.88173 0.85492 0.85539 0.85047 0.83473 0.90096 0.91133 0.92554 0.92139 0.88593 0.94286 0.93017 0.91529 0.90719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 9.90 37.16 0.37 -1.66 16 2 C -0.14 -1.87 5.53 -27.88 -0.15 -2.02 16 3 C 0.02 0.25 5.13 -104.62 -0.54 -0.29 16 4 C -0.14 -1.85 9.69 -39.59 -0.38 -2.23 16 5 C -0.07 -0.88 10.05 -39.59 -0.40 -1.27 16 6 C -0.14 -2.02 10.05 -39.58 -0.40 -2.42 16 7 C -0.02 -0.36 9.49 -39.58 -0.38 -0.74 16 8 C -0.67 -11.26 5.83 -39.58 -0.23 -11.49 16 9 S 2.69 47.74 4.75 -107.50 -0.51 47.23 16 10 O -0.96 -17.61 14.76 -57.17 -0.84 -18.45 16 11 O -0.96 -18.75 14.62 -57.17 -0.84 -19.59 16 12 N -0.99 -17.65 2.29 -113.27 -0.26 -17.91 16 13 C 0.12 1.91 6.36 -3.71 -0.02 1.88 16 14 C -0.14 -2.34 5.77 -26.62 -0.15 -2.49 16 15 C -0.11 -2.35 4.96 -26.69 -0.13 -2.48 16 16 C 0.04 0.84 2.14 -91.43 -0.20 0.64 16 17 H 0.03 0.77 6.95 -51.93 -0.36 0.41 16 18 C -0.51 -13.18 8.57 -34.44 -0.30 -13.47 16 19 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 20 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 21 N -0.89 -23.65 11.31 55.43 0.63 -23.02 16 22 Si 0.89 20.39 29.54 -169.99 -5.02 15.37 16 23 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 C 0.12 2.48 5.61 -3.49 -0.02 2.46 16 27 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 1.08 6.22 -51.93 -0.32 0.75 16 30 H 0.09 0.96 8.06 -51.93 -0.42 0.54 16 31 H 0.10 1.53 5.24 -51.93 -0.27 1.26 16 32 H 0.13 1.26 8.06 -52.48 -0.42 0.83 16 33 H 0.13 1.19 8.06 -52.48 -0.42 0.76 16 34 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 35 H 0.15 2.49 3.53 -52.49 -0.19 2.30 16 36 H 0.08 1.18 6.96 -51.93 -0.36 0.81 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.06 0.94 6.07 -51.92 -0.32 0.63 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.10 2.30 6.04 -51.93 -0.31 1.98 16 41 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 43 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 44 H 0.07 1.51 7.30 -51.93 -0.38 1.13 16 LS Contribution 348.39 15.07 5.25 5.25 Total: -1.00 -29.34 348.39 -10.89 -40.23 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -6.28 Total: 4.88 kcal Atomic # 6 Polarization: -30.96 SS G_CDS: -3.02 Total: -33.99 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: 0.37 Total: -40.94 kcal Atomic # 8 Polarization: -36.36 SS G_CDS: -1.68 Total: -38.04 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 16 Polarization: 47.74 SS G_CDS: -0.51 Total: 47.23 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.34 -10.89 -40.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594807282.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.074 kcal (2) G-P(sol) polarization free energy of solvation -29.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds