Wall clock time and date at job start Tue Mar 31 2020 13:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.47222 * 2 1 4 4 C 1.38256 * 119.99772 * 265.95376 * 3 2 1 5 5 C 1.38210 * 119.99850 * 179.97438 * 4 3 2 6 6 C 1.38255 * 120.00109 * 359.97438 * 5 4 3 7 7 C 1.38213 * 120.00135 * 359.97427 * 6 5 4 8 8 C 1.38211 * 120.00097 * 85.83806 * 3 2 1 9 9 S 1.76198 * 119.99885 * 0.06644 * 8 3 2 10 10 O 1.42099 * 106.40442 * 279.88866 * 9 8 3 11 11 O 1.42095 * 106.40454 * 52.81759 * 9 8 3 12 12 N 1.65609 * 107.21573 * 166.35313 * 9 8 3 13 13 C 1.46928 * 120.62791 * 96.25320 * 12 9 8 14 14 C 1.53188 * 108.77393 * 233.58210 * 13 12 9 15 15 C 1.53032 * 109.31705 * 305.36874 * 14 13 12 16 16 C 1.53046 * 109.54010 * 61.36452 * 15 14 13 17 17 H 1.08999 * 109.49351 * 58.58266 * 16 15 14 18 18 C 1.50697 * 109.50158 * 178.65249 * 16 15 14 19 19 H 1.07996 * 120.00236 * 119.99681 * 18 16 15 20 20 C 1.37880 * 119.99653 * 300.00171 * 18 16 15 21 21 N 1.31508 * 120.00342 * 359.97438 * 20 18 16 22 22 Si 1.86802 * 119.99867 * 179.97438 * 20 18 16 23 23 H 1.48509 * 109.47063 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47254 * 119.99734 * 22 20 18 25 25 H 1.48493 * 109.47072 * 240.00148 * 22 20 18 26 26 C 1.46922 * 120.62892 * 275.97549 * 12 9 8 27 27 H 1.09009 * 109.46872 * 65.53613 * 1 2 3 28 28 H 1.08993 * 109.47256 * 185.53304 * 1 2 3 29 29 H 1.09001 * 109.47297 * 305.53590 * 1 2 3 30 30 H 1.08999 * 109.47121 * 239.99680 * 2 1 3 31 31 H 1.08999 * 109.46921 * 119.99316 * 2 1 3 32 32 H 1.08003 * 119.99974 * 0.02562 * 4 3 2 33 33 H 1.08004 * 120.00146 * 179.97438 * 5 4 3 34 34 H 1.08002 * 120.00018 * 180.02562 * 6 5 4 35 35 H 1.07999 * 119.99737 * 179.72209 * 7 6 5 36 36 H 1.09000 * 109.58824 * 353.37523 * 13 12 9 37 37 H 1.09006 * 109.58006 * 113.80024 * 13 12 9 38 38 H 1.09008 * 109.49679 * 65.32341 * 14 13 12 39 39 H 1.08999 * 109.49487 * 185.41424 * 14 13 12 40 40 H 1.09002 * 109.46001 * 181.38320 * 15 14 13 41 41 H 1.09000 * 109.46150 * 301.36012 * 15 14 13 42 42 H 0.97004 * 120.00556 * 180.02562 * 21 20 18 43 43 H 1.09007 * 109.58254 * 246.20136 * 26 12 9 44 44 H 1.08997 * 109.58726 * 6.62338 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3425 2.0444 -1.1944 5 6 2.8027 3.3476 -1.1944 6 6 2.9525 4.0279 -0.0002 7 6 2.6415 3.4049 1.1938 8 6 2.1809 2.1013 1.1938 9 16 1.7844 1.3071 2.7158 10 8 0.3715 1.3774 2.8490 11 8 2.5066 0.0834 2.7299 12 7 2.4156 2.2364 3.9326 13 6 1.5786 3.2182 4.6357 14 6 2.2712 4.5836 4.5839 15 6 3.6901 4.4529 5.1420 16 6 4.4904 3.4725 4.2814 17 1 4.5151 3.8287 3.2516 18 6 5.8971 3.3697 4.8120 19 1 6.2792 2.4171 5.1481 20 6 6.6963 4.4918 4.8684 21 7 6.2312 5.6517 4.4587 22 14 8.4398 4.3646 5.5268 23 1 8.7190 2.9602 5.9206 24 1 9.3987 4.7837 4.4731 25 1 8.5876 5.2488 6.7106 26 6 3.8215 2.0905 4.3336 27 1 -0.3633 0.4256 -0.9355 28 1 -0.3633 -1.0228 0.0991 29 1 -0.3634 0.5973 0.8363 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 2.2243 1.5133 -2.1274 33 1 3.0453 3.8346 -2.1274 34 1 3.3117 5.0464 -0.0003 35 1 2.7628 3.9349 2.1269 36 1 0.6052 3.2834 4.1495 37 1 1.4510 2.9124 5.6742 38 1 2.3168 4.9294 3.5511 39 1 1.7090 5.2996 5.1833 40 1 4.1767 5.4282 5.1290 41 1 3.6449 4.0833 6.1664 42 1 6.7935 6.4411 4.4981 43 1 3.8729 1.6946 5.3479 44 1 4.3284 1.4114 3.6480 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594807282.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:14 Heat of formation + Delta-G solvation = -75.221890 kcal Electronic energy + Delta-G solvation = -26876.195057 eV Core-core repulsion = 23305.165717 eV Total energy + Delta-G solvation = -3571.029340 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -40.44881 -39.42556 -38.37168 -37.14349 -35.37561 -35.03742 -32.74833 -32.25928 -31.86737 -30.41995 -27.03140 -25.38221 -24.94806 -24.23462 -23.35989 -22.37578 -21.05504 -19.81174 -19.15065 -18.34513 -18.09527 -17.14808 -16.94141 -16.59143 -16.44456 -15.57362 -15.52575 -15.21690 -14.99140 -14.76988 -14.63609 -14.48694 -14.32879 -14.20545 -13.81295 -13.52731 -13.44270 -13.24038 -13.09050 -12.96854 -12.85743 -12.69562 -12.67902 -12.50896 -12.14732 -11.92723 -11.85159 -11.80150 -11.65967 -11.37417 -11.06886 -10.74567 -10.40092 -10.34344 -9.84234 -9.81603 -8.06161 -6.18847 -0.65592 -0.16837 0.29061 1.41661 1.45688 1.55216 1.78661 2.45877 2.49409 2.55930 3.21473 3.45612 3.53625 3.70359 3.75936 3.96576 4.17530 4.22197 4.26457 4.31775 4.33649 4.40381 4.52554 4.55162 4.58672 4.75175 4.77567 4.85067 4.87577 4.91686 4.95121 4.99012 5.09141 5.16310 5.26459 5.29677 5.33053 5.36411 5.40014 5.52289 5.65817 5.71662 5.89138 6.01819 6.17696 6.41628 6.90958 7.48616 8.97397 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015883 B = 0.004781 C = 0.004358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.474718 B = 5855.139850 C = 6423.287299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.142 4.142 3 C 0.000 4.000 4 C -0.139 4.139 5 C -0.060 4.060 6 C -0.153 4.153 7 C -0.045 4.045 8 C -0.687 4.687 9 S 2.699 3.301 10 O -0.973 6.973 11 O -0.984 6.984 12 N -0.995 5.995 13 C 0.115 3.885 14 C -0.130 4.130 15 C -0.105 4.105 16 C 0.037 3.963 17 H 0.011 0.989 18 C -0.534 4.534 19 H 0.053 0.947 20 C 0.023 3.977 21 N -0.909 5.909 22 Si 0.946 3.054 23 H -0.270 1.270 24 H -0.284 1.284 25 H -0.281 1.281 26 C 0.135 3.865 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.050 0.950 30 H 0.119 0.881 31 H 0.077 0.923 32 H 0.165 0.835 33 H 0.166 0.834 34 H 0.143 0.857 35 H 0.134 0.866 36 H 0.099 0.901 37 H 0.086 0.914 38 H 0.055 0.945 39 H 0.086 0.914 40 H 0.066 0.934 41 H 0.034 0.966 42 H 0.260 0.740 43 H 0.069 0.931 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.627 -4.176 -9.954 15.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.179 4.179 3 C -0.001 4.001 4 C -0.158 4.158 5 C -0.078 4.078 6 C -0.172 4.172 7 C -0.063 4.063 8 C -0.775 4.775 9 S 2.793 3.207 10 O -0.963 6.963 11 O -0.975 6.975 12 N -0.834 5.834 13 C -0.009 4.009 14 C -0.169 4.169 15 C -0.143 4.143 16 C 0.017 3.983 17 H 0.030 0.970 18 C -0.573 4.573 19 H 0.071 0.929 20 C -0.177 4.177 21 N -0.548 5.548 22 Si 0.773 3.227 23 H -0.195 1.195 24 H -0.210 1.210 25 H -0.207 1.207 26 C 0.010 3.990 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.069 0.931 30 H 0.137 0.863 31 H 0.095 0.905 32 H 0.183 0.817 33 H 0.184 0.816 34 H 0.161 0.839 35 H 0.152 0.848 36 H 0.117 0.883 37 H 0.104 0.896 38 H 0.074 0.926 39 H 0.104 0.896 40 H 0.084 0.916 41 H 0.053 0.947 42 H 0.069 0.931 43 H 0.088 0.912 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.058 -4.791 -9.847 15.563 hybrid contribution 1.664 0.823 0.190 1.866 sum -9.394 -3.968 -9.657 14.044 Atomic orbital electron populations 1.22007 0.92831 1.03796 1.03572 1.21370 0.98129 0.91974 1.06460 1.19777 0.92558 0.95627 0.92161 1.21531 1.00557 0.95807 0.97879 1.21862 0.92865 0.94079 0.99001 1.21582 1.01335 1.01667 0.92611 1.21309 0.92121 0.92247 1.00661 1.30622 1.19444 1.07670 1.19766 1.01593 0.72977 0.73212 0.72963 1.93516 1.29450 1.86929 1.86451 1.93501 1.74295 1.42651 1.87025 1.57499 1.20616 1.55670 1.49602 1.21709 0.92903 0.87869 0.98406 1.22006 0.97231 0.96310 1.01354 1.21416 0.93406 1.01927 0.97544 1.19048 0.92937 0.90704 0.95578 0.97046 1.21490 0.98658 0.94714 1.42459 0.92886 1.25549 1.01380 0.95202 0.95537 1.69979 1.37237 0.99604 1.48027 0.85692 0.80910 0.78141 0.78005 1.19475 1.20974 1.20700 1.21670 0.77727 0.99411 1.00189 0.90007 0.89965 0.93135 0.86311 0.90488 0.81721 0.81628 0.83907 0.84802 0.88306 0.89604 0.92611 0.89558 0.91560 0.94680 0.93061 0.91250 0.91565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.78 9.90 71.98 0.71 -3.07 16 2 C -0.14 -3.63 5.53 29.85 0.16 -3.47 16 3 C 0.00 0.01 5.13 -19.87 -0.10 -0.09 16 4 C -0.14 -3.15 9.69 22.27 0.22 -2.93 16 5 C -0.06 -1.33 10.05 22.27 0.22 -1.11 16 6 C -0.15 -4.25 10.05 22.27 0.22 -4.03 16 7 C -0.04 -1.48 9.49 22.27 0.21 -1.27 16 8 C -0.69 -23.08 5.83 22.27 0.13 -22.95 16 9 S 2.70 97.00 4.75 -56.49 -0.27 96.73 16 10 O -0.97 -35.59 14.76 -128.00 -1.89 -37.48 16 11 O -0.98 -39.40 14.62 -128.00 -1.87 -41.27 16 12 N -0.99 -35.76 2.29 -512.28 -1.17 -36.93 16 13 C 0.12 3.61 6.36 86.36 0.55 4.16 16 14 C -0.13 -4.36 5.77 30.67 0.18 -4.19 16 15 C -0.10 -4.50 4.96 30.62 0.15 -4.35 16 16 C 0.04 1.73 2.14 -11.32 -0.02 1.71 16 17 H 0.01 0.58 6.95 -2.39 -0.02 0.56 16 18 C -0.53 -28.02 8.57 25.60 0.22 -27.80 16 19 H 0.05 2.76 7.74 -2.91 -0.02 2.74 16 20 C 0.02 1.20 5.30 84.66 0.45 1.65 16 21 N -0.91 -49.35 11.31 21.45 0.24 -49.11 16 22 Si 0.95 42.22 29.54 68.60 2.03 44.25 16 23 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 24 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 25 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 26 C 0.13 5.52 5.61 86.51 0.49 6.01 16 27 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 28 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.05 1.41 6.22 -2.39 -0.01 1.39 16 30 H 0.12 2.22 8.06 -2.39 -0.02 2.20 16 31 H 0.08 2.34 5.24 -2.39 -0.01 2.33 16 32 H 0.17 2.42 8.06 -2.91 -0.02 2.40 16 33 H 0.17 2.32 8.06 -2.91 -0.02 2.30 16 34 H 0.14 3.49 8.06 -2.91 -0.02 3.47 16 35 H 0.13 4.69 3.53 -2.91 -0.01 4.68 16 36 H 0.10 2.76 6.96 -2.39 -0.02 2.75 16 37 H 0.09 2.42 8.14 -2.38 -0.02 2.40 16 38 H 0.06 1.88 6.07 -2.38 -0.01 1.86 16 39 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 40 H 0.07 3.26 6.04 -2.39 -0.01 3.24 16 41 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.26 13.51 8.31 -92.71 -0.77 12.74 16 43 H 0.07 2.77 8.14 -2.38 -0.02 2.75 16 44 H 0.07 2.79 7.30 -2.39 -0.02 2.77 16 Total: -1.00 -64.51 348.39 1.86 -62.66 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: 1.00 Total: 22.88 kcal Atomic # 6 Polarization: -65.51 SS G_CDS: 3.79 Total: -61.72 kcal Atomic # 7 Polarization: -85.11 SS G_CDS: -0.93 Total: -86.04 kcal Atomic # 8 Polarization: -74.99 SS G_CDS: -3.76 Total: -78.75 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Atomic # 16 Polarization: 97.00 SS G_CDS: -0.27 Total: 96.73 kcal Total: -64.51 1.86 -62.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594807282.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.565 kcal (2) G-P(sol) polarization free energy of solvation -64.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds