Wall clock time and date at job start Tue Mar 31 2020 13:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50708 * 109.47369 * 2 1 4 4 C 1.38245 * 119.99391 * 90.00277 * 3 2 1 5 5 C 1.38228 * 119.99548 * 180.02562 * 4 3 2 6 6 C 1.38241 * 120.00096 * 359.95110 * 5 4 3 7 7 S 1.76198 * 119.99806 * 180.02562 * 6 5 4 8 8 O 1.42091 * 106.40476 * 336.46274 * 7 6 5 9 9 O 1.42106 * 106.40137 * 203.53895 * 7 6 5 10 10 N 1.65603 * 107.21547 * 90.00438 * 7 6 5 11 11 C 1.46931 * 120.62894 * 89.99805 * 10 7 6 12 12 C 1.53187 * 108.77274 * 233.58519 * 11 10 7 13 13 C 1.53049 * 109.31497 * 305.36469 * 12 11 10 14 14 C 1.53039 * 109.53353 * 61.36666 * 13 12 11 15 15 H 1.09002 * 109.49751 * 58.58726 * 14 13 12 16 16 C 1.50704 * 109.49530 * 178.65349 * 14 13 12 17 17 H 1.08000 * 120.00137 * 119.93517 * 16 14 13 18 18 C 1.37880 * 119.99774 * 299.93494 * 16 14 13 19 19 N 1.31509 * 119.99752 * 180.02562 * 18 16 14 20 20 Si 1.86805 * 119.99939 * 0.02562 * 18 16 14 21 21 H 1.48491 * 109.47121 * 90.00157 * 20 18 16 22 22 H 1.48501 * 109.46699 * 210.00014 * 20 18 16 23 23 H 1.48496 * 109.47223 * 329.99930 * 20 18 16 24 24 C 1.46925 * 120.63087 * 269.97433 * 10 7 6 25 25 C 1.38232 * 119.99956 * 0.28059 * 6 5 4 26 26 C 1.38222 * 120.00293 * 270.02389 * 3 2 1 27 27 H 1.09007 * 109.46777 * 299.99806 * 1 2 3 28 28 H 1.08994 * 109.47219 * 59.99439 * 1 2 3 29 29 H 1.08995 * 109.47349 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47117 * 240.00602 * 2 1 3 31 31 H 1.09003 * 109.47465 * 120.00645 * 2 1 3 32 32 H 1.07991 * 120.00084 * 359.97438 * 4 3 2 33 33 H 1.08001 * 120.00270 * 179.97438 * 5 4 3 34 34 H 1.09002 * 109.58421 * 113.79803 * 11 10 7 35 35 H 1.08993 * 109.70684 * 353.44579 * 11 10 7 36 36 H 1.09006 * 109.49516 * 185.41853 * 12 11 10 37 37 H 1.08993 * 109.52540 * 65.33473 * 12 11 10 38 38 H 1.08998 * 109.45961 * 301.34644 * 13 12 11 39 39 H 1.08995 * 109.44701 * 181.37889 * 13 12 11 40 40 H 0.97001 * 119.99695 * 179.97438 * 19 18 16 41 41 H 1.09005 * 109.58300 * 6.62528 * 24 10 7 42 42 H 1.08998 * 109.58651 * 246.20469 * 24 10 7 43 43 H 1.08003 * 119.99950 * 179.72683 * 25 6 5 44 44 H 1.08001 * 119.99948 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2628 2.0724 1.1973 5 6 2.7231 3.3758 1.1974 6 6 2.9540 4.0274 0.0002 7 16 3.5414 5.6886 0.0003 8 8 3.1615 6.2484 1.2498 9 8 3.1623 6.2483 -1.2496 10 7 5.1961 5.6233 0.0008 11 6 5.9445 5.5937 -1.2633 12 6 6.8898 4.3884 -1.2485 13 6 7.7702 4.4508 0.0018 14 6 6.8891 4.3890 1.2516 15 1 6.3050 3.4688 1.2399 16 6 7.7588 4.4172 2.4821 17 1 7.6486 5.2136 3.2032 18 6 8.6953 3.4262 2.6871 19 7 9.4539 3.4505 3.7611 20 14 8.8864 2.0491 1.4395 21 1 9.8903 2.4421 0.4184 22 1 9.3396 0.8150 2.1300 23 1 7.5811 1.7954 0.7784 24 6 5.9438 5.5944 1.2653 25 6 2.7190 3.3774 -1.1970 26 6 2.2623 2.0727 -1.1970 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 2.0824 1.5634 2.1325 33 1 2.9028 3.8851 2.1327 34 1 6.5239 6.5113 -1.3664 35 1 5.2508 5.5039 -2.0991 36 1 7.5194 4.4089 -2.1381 37 1 6.3062 3.4679 -1.2370 38 1 8.3355 5.3827 0.0017 39 1 8.4604 3.6073 0.0021 40 1 10.1125 2.7531 3.9055 41 1 5.2478 5.5036 2.0993 42 1 6.5231 6.5120 1.3683 43 1 2.8951 3.8880 -2.1323 44 1 2.0823 1.5636 -2.1323 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594809557.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:22 Heat of formation + Delta-G solvation = -58.401707 kcal Electronic energy + Delta-G solvation = -26300.606886 eV Core-core repulsion = 22730.306924 eV Total energy + Delta-G solvation = -3570.299962 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.48226 -38.05734 -37.09629 -35.66186 -34.44961 -33.32544 -31.59147 -31.10439 -30.58203 -29.76087 -25.19361 -24.49076 -24.08247 -22.93787 -21.61917 -21.33803 -19.73206 -18.64454 -17.95687 -17.17305 -16.68481 -16.07890 -15.71465 -15.21337 -14.90043 -14.57450 -14.19374 -13.91051 -13.84728 -13.71309 -13.50079 -13.31683 -13.14404 -12.90830 -12.84550 -12.56752 -12.25599 -11.97003 -11.87796 -11.69359 -11.58348 -11.57089 -11.24561 -11.16173 -11.07163 -10.76622 -10.61113 -10.29260 -10.19140 -9.88554 -9.47501 -9.16098 -9.07644 -9.05229 -8.61549 -8.43477 -6.13305 -4.13458 0.53066 0.85111 1.27371 3.09290 3.21193 3.32641 3.34520 3.50064 3.96241 4.34923 4.39840 4.46949 4.62446 4.84236 4.94617 5.01872 5.04620 5.19121 5.22807 5.27555 5.34651 5.36617 5.53568 5.58490 5.65934 5.69277 5.73852 5.89575 5.90019 5.95285 6.00944 6.06950 6.11767 6.12354 6.34934 6.37709 6.38207 6.48324 6.70059 6.78626 6.79877 6.93823 7.07873 7.43225 7.70177 8.43351 8.90457 9.48616 10.99588 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011199 B = 0.005434 C = 0.004330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2499.532814 B = 5151.399256 C = 6464.590306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 C -0.032 4.032 4 C -0.139 4.139 5 C -0.009 4.009 6 C -0.678 4.678 7 S 2.689 3.311 8 O -0.957 6.957 9 O -0.967 6.967 10 N -0.993 5.993 11 C 0.127 3.873 12 C -0.139 4.139 13 C -0.119 4.119 14 C 0.004 3.996 15 H 0.030 0.970 16 C -0.516 4.516 17 H 0.078 0.922 18 C 0.073 3.927 19 N -0.898 5.898 20 Si 0.886 3.114 21 H -0.279 1.279 22 H -0.299 1.299 23 H -0.266 1.266 24 C 0.136 3.864 25 C -0.018 4.018 26 C -0.143 4.143 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.131 0.869 33 H 0.142 0.858 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.048 0.952 40 H 0.264 0.736 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.137 0.863 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.317 -4.247 -10.972 18.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.130 4.130 3 C -0.032 4.032 4 C -0.157 4.157 5 C -0.029 4.029 6 C -0.764 4.764 7 S 2.780 3.220 8 O -0.947 6.947 9 O -0.957 6.957 10 N -0.833 5.833 11 C 0.002 3.998 12 C -0.178 4.178 13 C -0.157 4.157 14 C -0.017 4.017 15 H 0.048 0.952 16 C -0.554 4.554 17 H 0.096 0.904 18 C -0.129 4.129 19 N -0.536 5.536 20 Si 0.716 3.284 21 H -0.206 1.206 22 H -0.226 1.226 23 H -0.191 1.191 24 C 0.012 3.988 25 C -0.038 4.038 26 C -0.162 4.162 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.149 0.851 33 H 0.160 0.840 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.101 0.899 42 H 0.090 0.910 43 H 0.154 0.846 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -14.697 -3.571 -10.862 18.621 hybrid contribution 0.482 -1.739 -0.603 1.902 sum -14.215 -5.310 -11.465 19.019 Atomic orbital electron populations 1.21738 0.94252 1.01948 1.02427 1.20682 0.96479 0.92368 1.03505 1.20215 0.93803 0.95800 0.93402 1.21172 1.01542 0.95066 0.97958 1.20972 0.90950 0.94116 0.96826 1.31122 1.18504 1.27304 0.99441 1.01987 0.72487 0.74142 0.73372 1.93567 1.81689 1.75789 1.43695 1.93535 1.82012 1.76053 1.44135 1.57708 1.22988 1.89038 1.13524 1.21369 0.95070 0.99334 0.84071 1.22015 0.98513 0.97836 0.99480 1.21925 0.98003 1.01372 0.94384 1.19484 0.94009 0.94045 0.94132 0.95176 1.20940 1.18045 1.11407 1.05039 0.90425 1.24966 0.95280 0.97481 0.95140 1.69890 1.22524 1.34324 1.26838 0.86870 0.78814 0.81533 0.81145 1.20584 1.22627 1.19093 1.21638 0.94835 1.00687 0.81596 1.20855 0.92312 0.94137 0.96467 1.21093 1.02249 0.95076 0.97788 0.92325 0.92454 0.92121 0.90597 0.90412 0.85116 0.84031 0.90878 0.90157 0.91815 0.92257 0.91818 0.93392 0.92601 0.89856 0.90967 0.84555 0.85414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.89 37.16 0.37 -0.72 16 2 C -0.09 -0.81 6.06 -27.88 -0.17 -0.97 16 3 C -0.03 -0.37 5.13 -104.62 -0.54 -0.91 16 4 C -0.14 -1.76 9.70 -39.58 -0.38 -2.15 16 5 C -0.01 -0.14 9.52 -39.58 -0.38 -0.51 16 6 C -0.68 -10.12 5.97 -39.58 -0.24 -10.36 16 7 S 2.69 43.75 5.69 -107.50 -0.61 43.14 16 8 O -0.96 -17.73 16.00 -57.17 -0.91 -18.65 16 9 O -0.97 -16.49 15.99 -57.17 -0.91 -17.41 16 10 N -0.99 -16.46 3.29 -113.52 -0.37 -16.84 16 11 C 0.13 1.86 6.37 -3.71 -0.02 1.83 16 12 C -0.14 -2.21 6.08 -26.61 -0.16 -2.37 16 13 C -0.12 -2.38 4.66 -26.69 -0.12 -2.51 16 14 C 0.00 0.08 1.84 -91.65 -0.17 -0.09 16 15 H 0.03 0.69 7.20 -51.93 -0.37 0.31 16 16 C -0.52 -13.71 9.15 -34.44 -0.31 -14.02 16 17 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16 18 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 19 N -0.90 -26.67 13.96 55.43 0.77 -25.90 16 20 Si 0.89 21.30 24.39 -169.99 -4.15 17.15 16 21 H -0.28 -6.52 6.86 56.52 0.39 -6.13 16 22 H -0.30 -7.27 7.11 56.52 0.40 -6.87 16 23 H -0.27 -6.13 6.53 56.52 0.37 -5.77 16 24 C 0.14 2.59 5.60 -3.71 -0.02 2.57 16 25 C -0.02 -0.24 9.52 -39.58 -0.38 -0.62 16 26 C -0.14 -1.67 9.70 -39.59 -0.38 -2.05 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.59 8.09 -51.93 -0.42 0.17 16 31 H 0.08 0.64 8.09 -51.93 -0.42 0.22 16 32 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 33 H 0.14 2.00 7.62 -52.49 -0.40 1.60 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.08 1.02 7.13 -51.93 -0.37 0.65 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 39 H 0.05 1.03 3.26 -51.93 -0.17 0.87 16 40 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.08 1.58 7.13 -51.93 -0.37 1.21 16 42 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 43 H 0.14 1.57 7.61 -52.48 -0.40 1.17 16 44 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 358.14 15.07 5.40 5.40 Total: -1.00 -32.29 358.14 -10.55 -42.83 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -6.75 Total: 1.21 kcal Atomic # 6 Polarization: -27.93 SS G_CDS: -3.01 Total: -30.94 kcal Atomic # 7 Polarization: -43.13 SS G_CDS: 0.40 Total: -42.73 kcal Atomic # 8 Polarization: -34.23 SS G_CDS: -1.83 Total: -36.06 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.15 Total: 17.15 kcal Atomic # 16 Polarization: 43.75 SS G_CDS: -0.61 Total: 43.14 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.29 -10.55 -42.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594809557.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.567 kcal (2) G-P(sol) polarization free energy of solvation -32.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds