Wall clock time and date at job start Tue Mar 31 2020 13:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50708 * 109.47369 * 2 1 4 4 C 1.38245 * 119.99391 * 90.00277 * 3 2 1 5 5 C 1.38228 * 119.99548 * 180.02562 * 4 3 2 6 6 C 1.38241 * 120.00096 * 359.95110 * 5 4 3 7 7 S 1.76198 * 119.99806 * 180.02562 * 6 5 4 8 8 O 1.42091 * 106.40476 * 336.46274 * 7 6 5 9 9 O 1.42106 * 106.40137 * 203.53895 * 7 6 5 10 10 N 1.65603 * 107.21547 * 90.00438 * 7 6 5 11 11 C 1.46931 * 120.62894 * 89.99805 * 10 7 6 12 12 C 1.53187 * 108.77274 * 233.58519 * 11 10 7 13 13 C 1.53049 * 109.31497 * 305.36469 * 12 11 10 14 14 C 1.53039 * 109.53353 * 61.36666 * 13 12 11 15 15 H 1.09002 * 109.49751 * 58.58726 * 14 13 12 16 16 C 1.50704 * 109.49530 * 178.65349 * 14 13 12 17 17 H 1.08000 * 120.00137 * 119.93517 * 16 14 13 18 18 C 1.37880 * 119.99774 * 299.93494 * 16 14 13 19 19 N 1.31509 * 119.99752 * 180.02562 * 18 16 14 20 20 Si 1.86805 * 119.99939 * 0.02562 * 18 16 14 21 21 H 1.48491 * 109.47121 * 90.00157 * 20 18 16 22 22 H 1.48501 * 109.46699 * 210.00014 * 20 18 16 23 23 H 1.48496 * 109.47223 * 329.99930 * 20 18 16 24 24 C 1.46925 * 120.63087 * 269.97433 * 10 7 6 25 25 C 1.38232 * 119.99956 * 0.28059 * 6 5 4 26 26 C 1.38222 * 120.00293 * 270.02389 * 3 2 1 27 27 H 1.09007 * 109.46777 * 299.99806 * 1 2 3 28 28 H 1.08994 * 109.47219 * 59.99439 * 1 2 3 29 29 H 1.08995 * 109.47349 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47117 * 240.00602 * 2 1 3 31 31 H 1.09003 * 109.47465 * 120.00645 * 2 1 3 32 32 H 1.07991 * 120.00084 * 359.97438 * 4 3 2 33 33 H 1.08001 * 120.00270 * 179.97438 * 5 4 3 34 34 H 1.09002 * 109.58421 * 113.79803 * 11 10 7 35 35 H 1.08993 * 109.70684 * 353.44579 * 11 10 7 36 36 H 1.09006 * 109.49516 * 185.41853 * 12 11 10 37 37 H 1.08993 * 109.52540 * 65.33473 * 12 11 10 38 38 H 1.08998 * 109.45961 * 301.34644 * 13 12 11 39 39 H 1.08995 * 109.44701 * 181.37889 * 13 12 11 40 40 H 0.97001 * 119.99695 * 179.97438 * 19 18 16 41 41 H 1.09005 * 109.58300 * 6.62528 * 24 10 7 42 42 H 1.08998 * 109.58651 * 246.20469 * 24 10 7 43 43 H 1.08003 * 119.99950 * 179.72683 * 25 6 5 44 44 H 1.08001 * 119.99948 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2628 2.0724 1.1973 5 6 2.7231 3.3758 1.1974 6 6 2.9540 4.0274 0.0002 7 16 3.5414 5.6886 0.0003 8 8 3.1615 6.2484 1.2498 9 8 3.1623 6.2483 -1.2496 10 7 5.1961 5.6233 0.0008 11 6 5.9445 5.5937 -1.2633 12 6 6.8898 4.3884 -1.2485 13 6 7.7702 4.4508 0.0018 14 6 6.8891 4.3890 1.2516 15 1 6.3050 3.4688 1.2399 16 6 7.7588 4.4172 2.4821 17 1 7.6486 5.2136 3.2032 18 6 8.6953 3.4262 2.6871 19 7 9.4539 3.4505 3.7611 20 14 8.8864 2.0491 1.4395 21 1 9.8903 2.4421 0.4184 22 1 9.3396 0.8150 2.1300 23 1 7.5811 1.7954 0.7784 24 6 5.9438 5.5944 1.2653 25 6 2.7190 3.3774 -1.1970 26 6 2.2623 2.0727 -1.1970 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 2.0824 1.5634 2.1325 33 1 2.9028 3.8851 2.1327 34 1 6.5239 6.5113 -1.3664 35 1 5.2508 5.5039 -2.0991 36 1 7.5194 4.4089 -2.1381 37 1 6.3062 3.4679 -1.2370 38 1 8.3355 5.3827 0.0017 39 1 8.4604 3.6073 0.0021 40 1 10.1125 2.7531 3.9055 41 1 5.2478 5.5036 2.0993 42 1 6.5231 6.5120 1.3683 43 1 2.8951 3.8880 -2.1323 44 1 2.0823 1.5636 -2.1323 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594809557.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:19 Heat of formation + Delta-G solvation = -78.917102 kcal Electronic energy + Delta-G solvation = -26301.496500 eV Core-core repulsion = 22730.306924 eV Total energy + Delta-G solvation = -3571.189576 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -40.41702 -39.52089 -38.43952 -37.01123 -35.23796 -35.18347 -33.20339 -32.21837 -32.04386 -30.59188 -27.05043 -25.60137 -25.20290 -23.90945 -23.14050 -22.21402 -21.23909 -19.93826 -19.28738 -18.63844 -18.39959 -17.23693 -16.76429 -16.58300 -16.32730 -15.56536 -15.47489 -15.40547 -14.89490 -14.73266 -14.70252 -14.62401 -14.37683 -14.29738 -14.24152 -13.79336 -13.37497 -13.26423 -13.22930 -13.06159 -12.85593 -12.70349 -12.41788 -12.38630 -12.34255 -12.06435 -11.84860 -11.78826 -11.68583 -11.47916 -11.15552 -10.92542 -10.66275 -10.15039 -10.05070 -9.84355 -8.28285 -6.32238 -0.69097 -0.20340 0.30023 1.30218 1.36056 1.46260 1.86958 2.33030 2.46316 2.74043 3.07422 3.19438 3.70344 3.72792 3.76036 3.91581 4.07546 4.15504 4.22478 4.31617 4.38220 4.43351 4.44096 4.48288 4.58403 4.63720 4.74487 4.80351 4.86919 4.90451 5.00115 5.04216 5.05485 5.06847 5.08353 5.18345 5.20562 5.25863 5.34992 5.42964 5.49745 5.55919 5.70274 5.79801 5.86430 6.30892 6.75308 7.33278 8.88244 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011199 B = 0.005434 C = 0.004330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2499.532814 B = 5151.399256 C = 6464.590306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 C -0.030 4.030 4 C -0.149 4.149 5 C -0.035 4.035 6 C -0.690 4.690 7 S 2.701 3.299 8 O -0.989 6.989 9 O -0.974 6.974 10 N -0.995 5.995 11 C 0.118 3.882 12 C -0.132 4.132 13 C -0.121 4.121 14 C 0.005 3.995 15 H 0.025 0.975 16 C -0.518 4.518 17 H 0.039 0.961 18 C 0.016 3.984 19 N -0.949 5.949 20 Si 0.948 3.052 21 H -0.264 1.264 22 H -0.304 1.304 23 H -0.248 1.248 24 C 0.145 3.855 25 C -0.027 4.027 26 C -0.142 4.142 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.146 0.854 33 H 0.131 0.869 34 H 0.086 0.914 35 H 0.107 0.893 36 H 0.097 0.903 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.035 0.965 40 H 0.265 0.735 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.154 0.846 44 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.553 -6.156 -14.432 22.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.129 4.129 3 C -0.030 4.030 4 C -0.168 4.168 5 C -0.054 4.054 6 C -0.779 4.779 7 S 2.795 3.205 8 O -0.980 6.980 9 O -0.964 6.964 10 N -0.833 5.833 11 C -0.006 4.006 12 C -0.171 4.171 13 C -0.159 4.159 14 C -0.015 4.015 15 H 0.043 0.957 16 C -0.557 4.557 17 H 0.057 0.943 18 C -0.181 4.181 19 N -0.589 5.589 20 Si 0.775 3.225 21 H -0.190 1.190 22 H -0.232 1.232 23 H -0.172 1.172 24 C 0.020 3.980 25 C -0.046 4.046 26 C -0.161 4.161 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.110 0.890 31 H 0.100 0.900 32 H 0.164 0.836 33 H 0.149 0.851 34 H 0.105 0.895 35 H 0.125 0.875 36 H 0.115 0.885 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.053 0.947 40 H 0.074 0.926 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.171 0.829 44 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -15.940 -5.432 -14.349 22.125 hybrid contribution 0.786 -1.137 0.533 1.481 sum -15.154 -6.569 -13.816 21.533 Atomic orbital electron populations 1.21733 0.93319 1.02956 1.02177 1.20768 0.97140 0.90447 1.04561 1.20635 0.92350 0.97147 0.92892 1.21443 1.01346 0.94462 0.99523 1.21069 0.92480 0.95294 0.96592 1.30792 1.20316 1.26300 1.00488 1.01403 0.72081 0.74540 0.72479 1.93522 1.82134 1.77178 1.45143 1.93514 1.81986 1.76846 1.44080 1.57627 1.23085 1.89329 1.13236 1.21660 0.95594 0.99605 0.83732 1.21978 0.98353 0.98417 0.98347 1.21841 0.98020 1.00738 0.95300 1.19394 0.93973 0.94903 0.93238 0.95709 1.21273 1.18347 1.09942 1.06104 0.94282 1.25793 0.95054 1.00223 0.97018 1.70046 1.23901 1.35682 1.29272 0.85860 0.79810 0.77889 0.78916 1.19050 1.23228 1.17190 1.21302 0.94414 0.99349 0.82920 1.21171 0.92155 0.94966 0.96291 1.21507 1.00881 0.94485 0.99184 0.93024 0.92309 0.90515 0.88973 0.89990 0.83622 0.85086 0.89547 0.87451 0.88480 0.92013 0.91965 0.94690 0.92630 0.90746 0.91235 0.82857 0.82150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.89 71.98 0.71 -1.00 16 2 C -0.09 -1.28 6.06 29.85 0.18 -1.09 16 3 C -0.03 -0.61 5.13 -19.86 -0.10 -0.71 16 4 C -0.15 -3.60 9.70 22.27 0.22 -3.39 16 5 C -0.03 -1.02 9.52 22.27 0.21 -0.80 16 6 C -0.69 -19.86 5.97 22.27 0.13 -19.73 16 7 S 2.70 86.22 5.69 -56.49 -0.32 85.90 16 8 O -0.99 -37.56 16.00 -128.00 -2.05 -39.60 16 9 O -0.97 -31.58 15.99 -128.00 -2.05 -33.63 16 10 N -0.99 -31.85 3.29 -513.08 -1.69 -33.54 16 11 C 0.12 3.10 6.37 86.36 0.55 3.65 16 12 C -0.13 -3.71 6.08 30.67 0.19 -3.52 16 13 C -0.12 -4.63 4.66 30.62 0.14 -4.49 16 14 C 0.01 0.23 1.84 -11.46 -0.02 0.21 16 15 H 0.02 1.12 7.20 -2.39 -0.02 1.10 16 16 C -0.52 -28.49 9.15 25.60 0.23 -28.25 16 17 H 0.04 2.37 7.99 -2.91 -0.02 2.35 16 18 C 0.02 0.93 5.45 84.66 0.46 1.39 16 19 N -0.95 -58.37 13.96 21.45 0.30 -58.07 16 20 Si 0.95 43.82 24.39 68.60 1.67 45.49 16 21 H -0.26 -11.54 6.86 99.48 0.68 -10.86 16 22 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 23 H -0.25 -10.62 6.53 99.48 0.65 -9.97 16 24 C 0.15 5.61 5.60 86.36 0.48 6.09 16 25 C -0.03 -0.63 9.52 22.27 0.21 -0.42 16 26 C -0.14 -2.80 9.70 22.27 0.22 -2.59 16 27 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 28 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.09 1.02 8.09 -2.38 -0.02 1.00 16 31 H 0.08 1.09 8.09 -2.39 -0.02 1.07 16 32 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16 33 H 0.13 3.92 7.62 -2.91 -0.02 3.90 16 34 H 0.09 2.05 8.14 -2.39 -0.02 2.04 16 35 H 0.11 2.28 7.13 -2.39 -0.02 2.27 16 36 H 0.10 2.14 8.14 -2.38 -0.02 2.12 16 37 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.03 1.42 3.26 -2.39 -0.01 1.41 16 40 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 41 H 0.07 2.96 7.13 -2.38 -0.02 2.95 16 42 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 43 H 0.15 3.00 7.61 -2.91 -0.02 2.98 16 44 H 0.16 2.07 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -71.67 358.14 0.59 -71.08 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: 0.90 Total: 17.00 kcal Atomic # 6 Polarization: -58.46 SS G_CDS: 3.82 Total: -54.64 kcal Atomic # 7 Polarization: -90.23 SS G_CDS: -1.39 Total: -91.61 kcal Atomic # 8 Polarization: -69.14 SS G_CDS: -4.09 Total: -73.23 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.67 Total: 45.49 kcal Atomic # 16 Polarization: 86.22 SS G_CDS: -0.32 Total: 85.90 kcal Total: -71.67 0.59 -71.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594809557.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.834 kcal (2) G-P(sol) polarization free energy of solvation -71.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds