Wall clock time and date at job start Tue Mar 31 2020 13:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50700 * 109.47031 * 2 1 4 4 C 1.38236 * 119.99836 * 89.99739 * 3 2 1 5 5 C 1.38239 * 120.00200 * 180.02562 * 4 3 2 6 6 C 1.38230 * 119.99782 * 0.02562 * 5 4 3 7 7 S 1.76200 * 120.00315 * 179.97438 * 6 5 4 8 8 O 1.42107 * 106.40007 * 336.46415 * 7 6 5 9 9 O 1.42094 * 106.40611 * 203.53681 * 7 6 5 10 10 N 1.65604 * 107.21769 * 89.99686 * 7 6 5 11 11 C 1.46931 * 120.62885 * 90.00154 * 10 7 6 12 12 C 1.53187 * 108.77309 * 126.41385 * 11 10 7 13 13 C 1.53043 * 109.31215 * 54.63979 * 12 11 10 14 14 C 1.53046 * 109.53700 * 298.63008 * 13 12 11 15 15 H 1.08999 * 109.49785 * 301.41955 * 14 13 12 16 16 C 1.50699 * 109.49957 * 181.31733 * 14 13 12 17 17 H 1.07992 * 120.00115 * 240.00342 * 16 14 13 18 18 C 1.37876 * 119.99613 * 60.00044 * 16 14 13 19 19 N 1.31519 * 120.00482 * 0.02562 * 18 16 14 20 20 Si 1.86804 * 119.99856 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47281 * 89.99540 * 20 18 16 22 22 H 1.48493 * 109.47238 * 210.00419 * 20 18 16 23 23 H 1.48507 * 109.46876 * 330.00055 * 20 18 16 24 24 C 1.46923 * 120.63384 * 270.03093 * 10 7 6 25 25 C 1.38242 * 120.00040 * 0.24985 * 6 5 4 26 26 C 1.38230 * 120.00145 * 270.02402 * 3 2 1 27 27 H 1.09003 * 109.46979 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47340 * 299.99630 * 1 2 3 29 29 H 1.09000 * 109.47215 * 59.99945 * 1 2 3 30 30 H 1.08995 * 109.47186 * 240.00177 * 2 1 3 31 31 H 1.09000 * 109.47215 * 120.00055 * 2 1 3 32 32 H 1.07998 * 120.00078 * 0.02562 * 4 3 2 33 33 H 1.07995 * 120.00090 * 179.97438 * 5 4 3 34 34 H 1.09001 * 109.58511 * 6.62628 * 11 10 7 35 35 H 1.09004 * 109.58611 * 246.20428 * 11 10 7 36 36 H 1.09000 * 109.50278 * 294.68579 * 12 11 10 37 37 H 1.09003 * 109.49810 * 174.58579 * 12 11 10 38 38 H 1.08998 * 109.46060 * 178.61481 * 13 12 11 39 39 H 1.08998 * 109.45045 * 58.64465 * 13 12 11 40 40 H 0.96993 * 119.99855 * 179.97438 * 19 18 16 41 41 H 1.08996 * 109.59375 * 113.79720 * 24 10 7 42 42 H 1.09006 * 109.58686 * 353.36720 * 24 10 7 43 43 H 1.08000 * 119.99979 * 179.73024 * 25 6 5 44 44 H 1.08002 * 120.00362 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2626 2.0725 1.1972 5 6 2.7228 3.3760 1.1973 6 6 2.9523 4.0280 0.0002 7 16 3.5383 5.6897 0.0001 8 8 3.1588 6.2490 1.2502 9 8 3.1579 6.2493 -1.2493 10 7 5.1931 5.6259 -0.0004 11 6 5.9407 5.5972 -1.2650 12 6 6.9769 6.7253 -1.2508 13 6 7.8506 6.5943 -0.0011 14 6 6.9779 6.7244 1.2494 15 1 6.4673 7.6873 1.2381 16 6 7.8435 6.6276 2.4792 17 1 7.6710 5.8427 3.2005 18 6 8.8557 7.5413 2.6834 19 7 9.0654 8.4976 1.8051 20 14 9.9291 7.4210 4.2074 21 1 11.1030 6.5584 3.9193 22 1 10.3943 8.7773 4.5935 23 1 9.1432 6.8316 5.3211 24 6 5.9416 5.5962 1.2635 25 6 2.7165 3.3782 -1.1970 26 6 2.2622 2.0726 -1.1971 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.0829 1.5632 2.1325 33 1 2.9024 3.8852 2.1326 34 1 5.2539 5.7423 -2.0989 35 1 6.4468 4.6373 -1.3686 36 1 6.4664 7.6882 -1.2385 37 1 7.6025 6.6559 -2.1408 38 1 8.6047 7.3813 -0.0010 39 1 8.3414 5.6211 -0.0017 40 1 9.7773 9.1405 1.9490 41 1 6.4478 4.6364 1.3661 42 1 5.2554 5.7409 2.0980 43 1 2.8916 3.8891 -2.1323 44 1 2.0814 1.5639 -2.1325 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594809558.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:24 Heat of formation + Delta-G solvation = -83.989437 kcal Electronic energy + Delta-G solvation = -25665.803357 eV Core-core repulsion = 22094.393828 eV Total energy + Delta-G solvation = -3571.409529 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -40.41773 -39.29998 -38.42975 -36.98483 -35.24034 -35.18536 -32.73258 -32.06717 -31.86104 -30.57494 -27.03779 -25.35022 -25.06066 -23.91358 -23.32650 -22.17170 -21.17124 -20.01328 -18.90777 -18.62878 -18.03925 -17.22018 -16.64536 -16.55211 -16.25506 -15.53411 -15.37020 -15.17866 -14.88148 -14.71342 -14.61537 -14.45068 -14.35237 -14.31188 -13.83011 -13.74708 -13.29356 -13.22462 -13.04331 -12.90312 -12.77203 -12.69744 -12.52098 -12.37565 -12.35909 -11.85757 -11.78901 -11.76031 -11.67721 -11.55416 -11.07366 -10.76563 -10.40542 -10.15390 -10.05264 -9.75538 -8.05900 -6.21051 -0.69387 -0.21338 0.29957 1.43821 1.45227 1.55057 1.92225 2.45687 2.49939 2.76941 3.20782 3.21260 3.72139 3.74343 3.84328 3.92989 4.20845 4.27236 4.33237 4.33916 4.46522 4.48991 4.57099 4.59220 4.62300 4.80488 4.81617 4.86345 4.91094 4.95829 5.06989 5.07403 5.08504 5.09636 5.19335 5.28717 5.36810 5.37716 5.50906 5.54702 5.66424 5.73585 5.86577 5.99702 6.18340 6.39108 6.90779 7.46993 8.98179 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018601 B = 0.003467 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.971640 B = 8074.115340 C = 8752.037866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.090 4.090 3 C -0.028 4.028 4 C -0.143 4.143 5 C -0.035 4.035 6 C -0.684 4.684 7 S 2.693 3.307 8 O -0.993 6.993 9 O -0.984 6.984 10 N -0.995 5.995 11 C 0.121 3.879 12 C -0.128 4.128 13 C -0.104 4.104 14 C 0.035 3.965 15 H -0.013 1.013 16 C -0.533 4.533 17 H 0.061 0.939 18 C 0.012 3.988 19 N -0.917 5.917 20 Si 0.956 3.044 21 H -0.273 1.273 22 H -0.288 1.288 23 H -0.268 1.268 24 C 0.136 3.864 25 C -0.029 4.029 26 C -0.140 4.140 27 H 0.076 0.924 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.153 0.847 33 H 0.135 0.865 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.038 0.962 37 H 0.086 0.914 38 H 0.060 0.940 39 H 0.042 0.958 40 H 0.260 0.740 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.148 0.852 44 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.541 -18.936 -7.315 24.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.127 4.127 3 C -0.028 4.028 4 C -0.162 4.162 5 C -0.054 4.054 6 C -0.774 4.774 7 S 2.789 3.211 8 O -0.984 6.984 9 O -0.974 6.974 10 N -0.834 5.834 11 C -0.003 4.003 12 C -0.167 4.167 13 C -0.142 4.142 14 C 0.015 3.985 15 H 0.005 0.995 16 C -0.572 4.572 17 H 0.079 0.921 18 C -0.186 4.186 19 N -0.556 5.556 20 Si 0.782 3.218 21 H -0.198 1.198 22 H -0.214 1.214 23 H -0.192 1.192 24 C 0.012 3.988 25 C -0.048 4.048 26 C -0.159 4.159 27 H 0.095 0.905 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.110 0.890 31 H 0.106 0.894 32 H 0.171 0.829 33 H 0.153 0.847 34 H 0.117 0.883 35 H 0.107 0.893 36 H 0.057 0.943 37 H 0.104 0.896 38 H 0.079 0.921 39 H 0.060 0.940 40 H 0.069 0.931 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.166 0.834 44 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -13.949 -18.017 -7.352 23.943 hybrid contribution 0.865 0.187 1.002 1.337 sum -13.084 -17.830 -6.350 23.009 Atomic orbital electron populations 1.21755 0.93678 1.02946 1.02092 1.20760 0.96819 0.90311 1.04825 1.20656 0.92136 0.97242 0.92797 1.21466 1.00966 0.94157 0.99609 1.21100 0.92662 0.95281 0.96356 1.30646 1.20495 1.25438 1.00832 1.01483 0.72254 0.75029 0.72324 1.93516 1.82234 1.77422 1.45210 1.93490 1.82134 1.77244 1.44537 1.57520 1.22867 1.89664 1.13311 1.21622 0.94914 0.99994 0.83808 1.21898 0.97777 0.97803 0.99231 1.21400 0.98685 1.00488 0.93618 1.18919 0.92610 0.92435 0.94506 0.99482 1.21496 1.15514 1.13416 1.06769 0.92092 1.25744 0.98733 0.94888 0.99257 1.70036 1.32398 1.16600 1.36615 0.85588 0.79079 0.77149 0.80011 1.19807 1.21406 1.19200 1.21525 0.94315 1.00200 0.82777 1.21159 0.92367 0.95100 0.96204 1.21509 1.00752 0.94196 0.99446 0.90497 0.92978 0.92637 0.88952 0.89404 0.82902 0.84723 0.88257 0.89298 0.94306 0.89579 0.92130 0.93971 0.93101 0.90785 0.91023 0.83436 0.82217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.89 71.98 0.71 -0.66 16 2 C -0.09 -0.91 6.06 29.85 0.18 -0.73 16 3 C -0.03 -0.47 5.13 -19.87 -0.10 -0.57 16 4 C -0.14 -2.81 9.70 22.27 0.22 -2.59 16 5 C -0.03 -0.89 9.52 22.27 0.21 -0.68 16 6 C -0.68 -19.00 5.97 22.27 0.13 -18.87 16 7 S 2.69 94.27 5.73 -56.49 -0.32 93.94 16 8 O -0.99 -41.49 15.87 -128.00 -2.03 -43.52 16 9 O -0.98 -36.55 15.86 -128.00 -2.03 -38.58 16 10 N -0.99 -35.68 3.29 -513.06 -1.69 -37.37 16 11 C 0.12 3.79 6.48 86.36 0.56 4.35 16 12 C -0.13 -4.76 6.08 30.67 0.19 -4.58 16 13 C -0.10 -4.79 4.96 30.62 0.15 -4.64 16 14 C 0.04 1.79 2.25 -11.46 -0.03 1.77 16 15 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 16 C -0.53 -29.11 8.56 25.60 0.22 -28.90 16 17 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 18 C 0.01 0.69 5.30 84.65 0.45 1.14 16 19 N -0.92 -53.33 11.31 21.45 0.24 -53.08 16 20 Si 0.96 43.45 29.54 68.60 2.03 45.48 16 21 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 22 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 23 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 24 C 0.14 5.63 5.70 86.36 0.49 6.12 16 25 C -0.03 -0.66 9.52 22.27 0.21 -0.45 16 26 C -0.14 -2.46 9.70 22.27 0.22 -2.24 16 27 H 0.08 0.49 8.14 -2.39 -0.02 0.48 16 28 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.09 0.69 8.09 -2.39 -0.02 0.67 16 31 H 0.09 0.74 8.09 -2.39 -0.02 0.72 16 32 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 33 H 0.13 3.51 7.62 -2.91 -0.02 3.48 16 34 H 0.10 2.72 6.92 -2.39 -0.02 2.70 16 35 H 0.09 2.32 8.14 -2.38 -0.02 2.30 16 36 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 38 H 0.06 3.21 6.04 -2.39 -0.01 3.20 16 39 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 41 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 42 H 0.07 3.02 6.92 -2.38 -0.02 3.00 16 43 H 0.15 2.99 7.61 -2.91 -0.02 2.97 16 44 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 Total: -1.00 -70.95 364.49 0.98 -69.97 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: 0.98 Total: 14.68 kcal Atomic # 6 Polarization: -55.33 SS G_CDS: 3.81 Total: -51.52 kcal Atomic # 7 Polarization: -89.01 SS G_CDS: -1.45 Total: -90.45 kcal Atomic # 8 Polarization: -78.04 SS G_CDS: -4.06 Total: -82.10 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 16 Polarization: 94.27 SS G_CDS: -0.32 Total: 93.94 kcal Total: -70.95 0.98 -69.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594809558.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.021 kcal (2) G-P(sol) polarization free energy of solvation -70.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds