Wall clock time and date at job start Tue Mar 31 2020 13:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47074 * 2 1 4 4 C 1.53003 * 109.46858 * 240.00091 * 2 1 3 5 5 C 1.50696 * 109.47186 * 120.00298 * 2 1 3 6 6 C 1.38230 * 120.00346 * 59.99557 * 5 2 1 7 7 C 1.38235 * 120.00326 * 180.02562 * 6 5 2 8 8 C 1.38234 * 119.99814 * 359.97438 * 7 6 5 9 9 S 1.76199 * 120.00037 * 179.97438 * 8 7 6 10 10 O 1.42106 * 106.40265 * 203.53950 * 9 8 7 11 11 O 1.42097 * 106.40472 * 336.46722 * 9 8 7 12 12 N 1.65608 * 107.21829 * 90.00408 * 9 8 7 13 13 C 1.47060 * 136.05779 * 269.63184 * 12 9 8 14 14 C 1.53751 * 87.88932 * 152.95694 * 13 12 9 15 15 C 1.50701 * 114.08686 * 139.77936 * 14 13 12 16 16 H 1.07998 * 120.00224 * 266.56636 * 15 14 13 17 17 C 1.37873 * 120.00192 * 86.56150 * 15 14 13 18 18 N 1.31512 * 120.00143 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00292 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.46950 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47378 * 120.00177 * 19 17 15 22 22 H 1.48508 * 109.46984 * 240.00069 * 19 17 15 23 23 C 1.47065 * 136.05454 * 89.99390 * 12 9 8 24 24 C 1.38239 * 120.00062 * 0.02871 * 8 7 6 25 25 C 1.38235 * 120.00123 * 359.97128 * 24 8 7 26 26 H 1.09006 * 109.47344 * 299.99614 * 1 2 3 27 27 H 1.09002 * 109.47245 * 59.99847 * 1 2 3 28 28 H 1.09005 * 109.47502 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47140 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47209 * 300.00174 * 3 2 1 31 31 H 1.08994 * 109.47108 * 59.99828 * 3 2 1 32 32 H 1.09005 * 109.46876 * 300.00154 * 4 2 1 33 33 H 1.09002 * 109.47143 * 59.99999 * 4 2 1 34 34 H 1.08996 * 109.46958 * 179.97438 * 4 2 1 35 35 H 1.08000 * 120.00356 * 359.97438 * 6 5 2 36 36 H 1.08000 * 120.00616 * 179.70664 * 7 6 5 37 37 H 1.09000 * 113.46942 * 267.69635 * 13 12 9 38 38 H 1.09004 * 113.46843 * 38.13173 * 13 12 9 39 39 H 1.08998 * 114.57850 * 272.66543 * 14 13 12 40 40 H 0.97001 * 120.00476 * 179.97438 * 18 17 15 41 41 H 1.08998 * 113.47423 * 321.86731 * 23 12 9 42 42 H 1.09002 * 113.46806 * 92.31517 * 23 12 9 43 43 H 1.08005 * 120.00087 * 180.02562 * 24 8 7 44 44 H 1.07999 * 120.00181 * 180.02562 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0323 -0.7104 1.2304 6 6 1.6984 -2.0338 1.4492 7 6 2.1587 -2.6854 2.5781 8 6 2.9535 -2.0136 3.4880 9 16 3.5398 -2.8438 4.9273 10 8 3.8185 -1.8340 5.8875 11 8 2.6393 -3.9167 5.1665 12 7 4.9946 -3.5326 4.5376 13 6 5.4438 -4.8256 4.0001 14 6 6.6698 -4.0967 3.4260 15 6 7.9581 -4.8687 3.5498 16 1 8.6031 -4.7100 4.4014 17 6 8.3134 -5.7776 2.5759 18 7 7.5283 -5.9706 1.5386 19 14 9.9100 -6.7351 2.7296 20 1 10.6077 -6.3369 3.9785 21 1 9.6131 -8.1896 2.7700 22 1 10.7788 -6.4396 1.5620 23 6 6.4062 -3.1226 4.5827 24 6 3.2875 -0.6901 3.2692 25 6 2.8271 -0.0386 2.1403 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1299 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6765 -1.7489 -1.2493 33 1 1.6766 -0.2074 -2.1393 34 1 3.1299 -0.7209 -1.2495 35 1 1.0771 -2.5586 0.7386 36 1 1.8939 -3.7180 2.7515 37 1 5.6936 -5.5534 4.7721 38 1 4.7813 -5.2318 3.2358 39 1 6.5189 -3.6663 2.4361 40 1 7.7784 -6.6098 0.8532 41 1 6.5636 -2.0778 4.3147 42 1 6.9098 -3.4014 5.5083 43 1 3.9088 -0.1654 3.9799 44 1 3.0884 0.9953 1.9692 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594826937.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:08 Heat of formation + Delta-G solvation = -43.882400 kcal Electronic energy + Delta-G solvation = -25438.384319 eV Core-core repulsion = 21868.713962 eV Total energy + Delta-G solvation = -3569.670357 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.93845 -39.91395 -38.36181 -37.40558 -37.00667 -34.56540 -32.28518 -31.30027 -30.09155 -28.29868 -28.13906 -26.62022 -26.38790 -24.59995 -23.53934 -21.65906 -20.38927 -19.90197 -19.21154 -18.47944 -18.12839 -17.17992 -16.72677 -16.47409 -16.09043 -15.85564 -15.68797 -15.23268 -14.74354 -14.69947 -14.56612 -14.44675 -14.21458 -13.95243 -13.50676 -13.33782 -13.26351 -13.24986 -13.10970 -13.08062 -12.86653 -12.79166 -12.57484 -12.56909 -12.33647 -12.22793 -12.10926 -11.92207 -11.57593 -11.50133 -10.99005 -10.95452 -10.51253 -10.17043 -10.07361 -9.84701 -8.12229 -6.21969 -0.73981 -0.22333 0.27110 1.47439 1.51189 1.61451 1.91697 2.44966 2.49552 2.74545 3.05562 3.21410 3.48950 3.62481 3.87927 3.99828 4.05453 4.16069 4.26605 4.29129 4.33717 4.42982 4.63231 4.68559 4.73732 4.76435 4.79719 4.80525 4.87803 4.89401 4.93301 4.99941 5.00788 5.00999 5.06034 5.15071 5.17392 5.27004 5.35099 5.40075 5.53216 5.65347 5.82134 5.86892 5.90386 6.31771 6.87719 7.47113 8.97827 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013235 B = 0.003782 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.096101 B = 7401.395080 C = 8680.108162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.035 4.035 3 C -0.147 4.147 4 C -0.141 4.141 5 C -0.017 4.017 6 C -0.140 4.140 7 C -0.033 4.033 8 C -0.685 4.685 9 S 2.724 3.276 10 O -0.984 6.984 11 O -0.991 6.991 12 N -1.049 6.049 13 C 0.135 3.865 14 C 0.023 3.977 15 C -0.526 4.526 16 H 0.068 0.932 17 C 0.020 3.980 18 N -0.920 5.920 19 Si 0.955 3.045 20 H -0.263 1.263 21 H -0.284 1.284 22 H -0.283 1.283 23 C 0.133 3.867 24 C -0.030 4.030 25 C -0.145 4.145 26 H 0.055 0.945 27 H 0.078 0.922 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.047 0.953 35 H 0.151 0.849 36 H 0.135 0.865 37 H 0.072 0.928 38 H 0.050 0.950 39 H 0.045 0.955 40 H 0.263 0.737 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.145 0.855 44 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.062 13.338 -5.177 18.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.035 4.035 3 C -0.204 4.204 4 C -0.198 4.198 5 C -0.017 4.017 6 C -0.159 4.159 7 C -0.053 4.053 8 C -0.775 4.775 9 S 2.821 3.179 10 O -0.975 6.975 11 O -0.982 6.982 12 N -0.889 5.889 13 C 0.010 3.990 14 C 0.002 3.998 15 C -0.565 4.565 16 H 0.086 0.914 17 C -0.180 4.180 18 N -0.559 5.559 19 Si 0.781 3.219 20 H -0.187 1.187 21 H -0.210 1.210 22 H -0.209 1.209 23 C 0.009 3.991 24 C -0.049 4.049 25 C -0.163 4.163 26 H 0.074 0.926 27 H 0.097 0.903 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.098 0.902 34 H 0.066 0.934 35 H 0.169 0.831 36 H 0.153 0.847 37 H 0.090 0.910 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.094 0.906 42 H 0.101 0.899 43 H 0.162 0.838 44 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -12.732 13.299 -4.425 18.936 hybrid contribution 0.717 -0.775 -0.519 1.177 sum -12.015 12.524 -4.944 18.047 Atomic orbital electron populations 1.21903 0.92147 1.02605 1.02839 1.19724 0.96836 0.95792 0.91184 1.22006 1.01390 0.93822 1.03170 1.21925 1.00929 1.00519 0.96451 1.20568 0.92488 0.93482 0.95195 1.21351 1.01799 0.95185 0.97558 1.21059 0.92139 0.99666 0.92432 1.30693 1.15838 1.07677 1.23275 1.00461 0.71163 0.72368 0.73884 1.93492 1.84913 1.60305 1.58794 1.93490 1.63814 1.55736 1.85140 1.59788 1.19523 1.27843 1.81754 1.22878 0.95909 0.84563 0.95667 1.20422 0.92842 0.93034 0.93503 1.21380 1.05583 1.22149 1.07343 0.91387 1.25752 0.99771 0.97801 0.94694 1.70069 1.38763 1.35820 1.11228 0.85545 0.79856 0.78195 0.78268 1.18711 1.21011 1.20892 1.22763 0.76478 0.99743 1.00162 1.21145 0.94939 0.91707 0.97122 1.21619 0.98991 1.01941 0.93775 0.92607 0.90290 0.92271 0.92255 0.90537 0.91669 0.92390 0.90184 0.93355 0.83142 0.84706 0.90972 0.93183 0.93701 0.92830 0.90568 0.89896 0.83764 0.82141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 8.29 71.98 0.60 -1.20 16 2 C -0.04 -0.56 0.85 -52.93 -0.05 -0.60 16 3 C -0.15 -1.88 7.13 71.98 0.51 -1.36 16 4 C -0.14 -2.20 8.29 71.98 0.60 -1.60 16 5 C -0.02 -0.38 4.76 -19.87 -0.09 -0.47 16 6 C -0.14 -3.47 8.71 22.27 0.19 -3.28 16 7 C -0.03 -1.02 9.52 22.27 0.21 -0.81 16 8 C -0.68 -22.33 5.97 22.27 0.13 -22.19 16 9 S 2.72 101.80 6.27 -56.49 -0.35 101.45 16 10 O -0.98 -39.00 17.28 -128.00 -2.21 -41.21 16 11 O -0.99 -41.34 17.28 -128.00 -2.21 -43.55 16 12 N -1.05 -41.57 4.23 -549.51 -2.32 -43.89 16 13 C 0.14 5.97 8.30 83.26 0.69 6.66 16 14 C 0.02 1.08 3.80 -11.12 -0.04 1.04 16 15 C -0.53 -26.62 8.82 25.60 0.23 -26.39 16 16 H 0.07 3.31 7.81 -2.91 -0.02 3.29 16 17 C 0.02 1.02 5.46 84.65 0.46 1.49 16 18 N -0.92 -50.75 13.26 21.45 0.28 -50.47 16 19 Si 0.96 41.10 29.54 68.60 2.03 43.13 16 20 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 21 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 22 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 23 C 0.13 5.21 8.29 83.18 0.69 5.90 16 24 C -0.03 -0.85 9.52 22.27 0.21 -0.63 16 25 C -0.14 -3.37 8.98 22.27 0.20 -3.17 16 26 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 27 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.06 0.78 7.39 -2.38 -0.02 0.77 16 29 H 0.06 0.80 7.51 -2.39 -0.02 0.79 16 30 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.06 0.78 7.51 -2.39 -0.02 0.76 16 32 H 0.06 0.92 7.39 -2.38 -0.02 0.91 16 33 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.15 2.94 7.10 -2.91 -0.02 2.92 16 36 H 0.14 4.05 7.61 -2.91 -0.02 4.03 16 37 H 0.07 3.16 8.10 -2.39 -0.02 3.14 16 38 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.04 2.29 8.11 -2.39 -0.02 2.27 16 40 H 0.26 13.79 8.31 -92.71 -0.77 13.02 16 41 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 42 H 0.08 3.09 8.10 -2.39 -0.02 3.07 16 43 H 0.14 3.78 7.62 -2.91 -0.02 3.76 16 44 H 0.16 2.78 5.90 -2.91 -0.02 2.76 16 Total: -1.00 -64.58 371.34 0.73 -63.84 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: 0.98 Total: 17.34 kcal Atomic # 6 Polarization: -51.18 SS G_CDS: 4.54 Total: -46.63 kcal Atomic # 7 Polarization: -92.32 SS G_CDS: -2.04 Total: -94.36 kcal Atomic # 8 Polarization: -80.34 SS G_CDS: -4.42 Total: -84.77 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 2.03 Total: 43.13 kcal Atomic # 16 Polarization: 101.80 SS G_CDS: -0.35 Total: 101.45 kcal Total: -64.58 0.73 -63.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594826937.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.960 kcal (2) G-P(sol) polarization free energy of solvation -64.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds