Wall clock time and date at job start Tue Mar 31 2020 13:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46999 * 2 1 4 4 C 1.52999 * 109.46809 * 119.99875 * 2 1 3 5 5 C 1.52993 * 109.47235 * 64.61310 * 4 2 1 6 6 N 1.46504 * 115.55190 * 79.27306 * 5 4 2 7 7 S 1.65600 * 120.00109 * 41.11734 * 6 5 4 8 8 O 1.42100 * 106.39911 * 173.06899 * 7 6 5 9 9 O 1.42097 * 106.40134 * 305.98625 * 7 6 5 10 10 C 1.76202 * 107.21535 * 59.53025 * 7 6 5 11 11 C 1.38653 * 119.87735 * 87.98976 * 10 7 6 12 12 C 1.38612 * 120.50404 * 179.97438 * 11 10 7 13 13 C 1.37633 * 120.24437 * 0.02562 * 12 11 10 14 14 C 1.40701 * 119.74959 * 359.97438 * 13 12 11 15 15 C 1.41393 * 120.24516 * 179.97438 * 14 13 12 16 16 H 1.08007 * 119.99946 * 145.47744 * 15 14 13 17 17 C 1.39938 * 120.00402 * 325.47575 * 15 14 13 18 18 N 1.30828 * 119.99880 * 353.45096 * 17 15 14 19 19 Si 1.86797 * 120.00379 * 173.45236 * 17 15 14 20 20 H 1.48496 * 109.47526 * 94.98794 * 19 17 15 21 21 H 1.48502 * 109.47032 * 214.99007 * 19 17 15 22 22 H 1.48507 * 109.47042 * 334.98677 * 19 17 15 23 23 C 1.37600 * 119.87208 * 267.71114 * 10 7 6 24 24 C 1.53003 * 117.49901 * 293.59724 * 5 4 2 25 25 C 1.52998 * 60.03443 * 252.47484 * 24 5 4 26 26 H 1.09001 * 109.47287 * 291.11300 * 1 2 3 27 27 H 1.09002 * 109.47070 * 51.11102 * 1 2 3 28 28 H 1.09002 * 109.47058 * 171.11140 * 1 2 3 29 29 H 1.08990 * 109.47264 * 239.99877 * 2 1 3 30 30 H 1.09002 * 109.46894 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.46954 * 299.99818 * 3 2 1 32 32 H 1.09001 * 109.46866 * 60.00083 * 3 2 1 33 33 H 1.09005 * 109.47159 * 304.60769 * 4 2 1 34 34 H 1.09007 * 109.46951 * 184.61600 * 4 2 1 35 35 H 0.97003 * 119.99627 * 221.12716 * 6 5 4 36 36 H 1.08006 * 119.74863 * 359.97396 * 11 10 7 37 37 H 1.07994 * 119.87561 * 180.02562 * 12 11 10 38 38 H 1.08004 * 120.12776 * 179.97438 * 13 12 11 39 39 H 0.97001 * 120.00187 * 180.02562 * 18 17 15 40 40 H 1.07996 * 120.12893 * 0.02562 * 23 10 7 41 41 H 1.09003 * 117.49714 * 359.97438 * 24 5 4 42 42 H 1.09003 * 117.49529 * 144.97489 * 24 5 4 43 43 H 1.09001 * 117.49613 * 107.49975 * 25 24 5 44 44 H 1.09001 * 117.50042 * 252.52463 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6268 -2.1932 1.1927 6 7 2.4519 -3.0486 0.3360 7 16 4.0980 -2.8682 0.3253 8 8 4.6130 -3.9317 -0.4641 9 8 4.3498 -1.4985 0.0432 10 6 4.6642 -3.1499 1.9699 11 6 4.9731 -4.4369 2.3831 12 6 5.4200 -4.6733 3.6737 13 6 5.5616 -3.6301 4.5603 14 6 5.2512 -2.3199 4.1521 15 6 5.3922 -1.2405 5.0544 16 1 5.7051 -0.2719 4.6931 17 6 5.1265 -1.4270 6.4156 18 7 4.6257 -2.5605 6.8350 19 14 5.4868 -0.0576 7.6339 20 1 4.2536 0.7367 7.8649 21 1 5.9448 -0.6456 8.9183 22 1 6.5487 0.8248 7.0869 23 6 4.8037 -2.0911 2.8375 24 6 0.1328 -2.5116 1.2798 25 6 1.0495 -2.8157 2.4664 26 1 -0.3634 0.3702 0.9587 27 1 -0.3633 0.6452 -0.7999 28 1 -0.3633 -1.0153 -0.1588 29 1 1.8933 -0.5138 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6107 -0.2572 2.1373 34 1 3.1268 -0.6502 1.2916 35 1 2.0339 -3.7205 -0.2251 36 1 4.8645 -5.2616 1.6941 37 1 5.6581 -5.6797 3.9847 38 1 5.9096 -3.8164 5.5656 39 1 4.4412 -2.6897 7.7785 40 1 4.5665 -1.0889 2.5123 41 1 -0.5557 -1.6723 1.3779 42 1 -0.2362 -3.3572 0.6993 43 1 0.9639 -2.1764 3.3452 44 1 1.2838 -3.8613 2.6664 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595370175.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:07 Heat of formation + Delta-G solvation = -41.267010 kcal Electronic energy + Delta-G solvation = -26552.683663 eV Core-core repulsion = 22983.126718 eV Total energy + Delta-G solvation = -3569.556946 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -38.98046 -37.64736 -36.64385 -35.33961 -34.77535 -33.74973 -31.90598 -30.06175 -29.84242 -27.47436 -26.96098 -25.44509 -22.24131 -21.84227 -21.05287 -20.75941 -20.00275 -18.75356 -17.82003 -17.18626 -16.12700 -15.78348 -15.29549 -15.03753 -14.74707 -14.67931 -14.35225 -13.64909 -13.45704 -13.40700 -13.16814 -12.59172 -12.47748 -12.10813 -11.97743 -11.94100 -11.79766 -11.62024 -11.44831 -11.37770 -11.31633 -11.30474 -11.02866 -10.97817 -10.93232 -10.75554 -10.61993 -10.49424 -10.33123 -9.74922 -9.66329 -9.49621 -9.35846 -8.75399 -8.04121 -7.59438 -6.82376 -4.54552 1.01887 2.17933 2.63354 3.02396 3.04610 3.07627 3.48754 3.87335 3.89570 4.22758 4.49475 4.76316 4.95675 5.01775 5.02004 5.21276 5.23816 5.35294 5.39476 5.49644 5.71297 5.78610 5.90316 5.94532 5.99970 6.01769 6.11502 6.15585 6.20537 6.26172 6.29525 6.38784 6.53280 6.56903 6.65712 6.71463 6.77361 6.83105 7.08196 7.20341 7.25448 7.35642 7.68879 7.84318 7.93845 8.41572 8.69718 8.75047 10.14669 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011962 B = 0.005302 C = 0.004405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.258286 B = 5279.918678 C = 6354.757677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.084 4.084 3 C -0.147 4.147 4 C -0.111 4.111 5 C 0.116 3.884 6 N -1.087 6.087 7 S 2.688 3.312 8 O -0.980 6.980 9 O -0.965 6.965 10 C -0.634 4.634 11 C -0.135 4.135 12 C -0.126 4.126 13 C -0.102 4.102 14 C 0.094 3.906 15 C -0.467 4.467 16 H 0.081 0.919 17 C 0.074 3.926 18 N -0.811 5.811 19 Si 0.912 3.088 20 H -0.270 1.270 21 H -0.276 1.276 22 H -0.261 1.261 23 C -0.109 4.109 24 C -0.181 4.181 25 C -0.177 4.177 26 H 0.052 0.948 27 H 0.046 0.954 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.051 0.949 33 H 0.078 0.922 34 H 0.106 0.894 35 H 0.412 0.588 36 H 0.104 0.896 37 H 0.098 0.902 38 H 0.122 0.878 39 H 0.280 0.720 40 H 0.114 0.886 41 H 0.111 0.889 42 H 0.093 0.907 43 H 0.103 0.897 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.588 1.585 -6.941 11.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.102 4.102 3 C -0.205 4.205 4 C -0.150 4.150 5 C 0.026 3.974 6 N -0.842 5.842 7 S 2.785 3.215 8 O -0.971 6.971 9 O -0.955 6.955 10 C -0.726 4.726 11 C -0.156 4.156 12 C -0.146 4.146 13 C -0.122 4.122 14 C 0.090 3.910 15 C -0.498 4.498 16 H 0.099 0.901 17 C -0.142 4.142 18 N -0.437 5.437 19 Si 0.736 3.264 20 H -0.195 1.195 21 H -0.202 1.202 22 H -0.185 1.185 23 C -0.131 4.131 24 C -0.220 4.220 25 C -0.216 4.216 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.124 0.876 35 H 0.245 0.755 36 H 0.122 0.878 37 H 0.116 0.884 38 H 0.140 0.860 39 H 0.091 0.909 40 H 0.132 0.868 41 H 0.129 0.871 42 H 0.112 0.888 43 H 0.122 0.878 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.066 1.831 -7.404 11.101 hybrid contribution -0.235 -0.158 1.280 1.311 sum -8.301 1.673 -6.125 10.451 Atomic orbital electron populations 1.22263 0.96209 1.02013 1.01125 1.20922 0.94747 0.96067 0.98499 1.21829 1.02017 0.95719 1.00886 1.21923 1.04926 0.89707 0.98414 1.20386 0.91689 0.90535 0.94744 1.55031 1.25207 1.48370 1.55555 1.01695 0.71603 0.73382 0.74827 1.93517 1.77419 1.57036 1.69091 1.93501 1.83706 1.34052 1.84195 1.29680 1.19761 1.01135 1.22047 1.20103 1.05495 0.93495 0.96504 1.20828 1.01852 0.98000 0.93889 1.21637 0.98751 0.92790 0.98995 1.17679 0.89038 0.93265 0.90987 1.19530 1.41354 0.97338 0.91536 0.90138 1.25836 0.92540 0.96620 0.99189 1.69728 1.32407 1.24412 1.17196 0.86233 0.79702 0.81074 0.79361 1.19536 1.20152 1.18467 1.20924 1.01523 0.95730 0.94890 1.23564 0.92257 1.03560 1.02606 1.23535 1.02569 1.02801 0.92687 0.92861 0.93443 0.91465 0.91088 0.91825 0.93300 0.93018 0.90371 0.87562 0.75457 0.87754 0.88360 0.85989 0.90870 0.86838 0.87090 0.88812 0.87843 0.88323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 7.65 37.16 0.28 -1.40 16 2 C -0.08 -1.10 2.91 -90.62 -0.26 -1.37 16 3 C -0.15 -1.87 9.18 37.16 0.34 -1.53 16 4 C -0.11 -1.67 4.23 -26.74 -0.11 -1.78 16 5 C 0.12 1.65 2.26 -131.78 -0.30 1.35 16 6 N -1.09 -15.98 6.04 0.57 0.00 -15.97 16 7 S 2.69 49.87 5.47 -107.50 -0.59 49.28 16 8 O -0.98 -20.10 17.32 -57.17 -0.99 -21.09 16 9 O -0.96 -19.10 14.19 -57.17 -0.81 -19.91 16 10 C -0.63 -13.51 5.82 -39.66 -0.23 -13.74 16 11 C -0.13 -2.90 9.53 -39.29 -0.37 -3.27 16 12 C -0.13 -2.79 10.02 -39.66 -0.40 -3.18 16 13 C -0.10 -2.48 8.62 -38.87 -0.34 -2.82 16 14 C 0.09 2.34 5.49 -106.82 -0.59 1.76 16 15 C -0.47 -11.71 9.04 -37.75 -0.34 -12.05 16 16 H 0.08 1.95 7.85 -52.48 -0.41 1.54 16 17 C 0.07 1.77 5.30 -17.34 -0.09 1.67 16 18 N -0.81 -19.89 11.03 55.55 0.61 -19.28 16 19 Si 0.91 18.06 29.56 -169.99 -5.03 13.04 16 20 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 21 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 22 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 23 C -0.11 -2.52 9.05 -38.87 -0.35 -2.87 16 24 C -0.18 -2.05 8.06 -26.73 -0.22 -2.27 16 25 C -0.18 -2.51 10.11 -26.69 -0.27 -2.78 16 26 H 0.05 0.54 7.85 -51.93 -0.41 0.13 16 27 H 0.05 0.46 8.12 -51.93 -0.42 0.04 16 28 H 0.07 0.67 5.21 -51.93 -0.27 0.39 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 1.10 7.95 -51.93 -0.41 0.69 16 34 H 0.11 1.85 3.38 -51.93 -0.18 1.68 16 35 H 0.41 4.95 8.91 -34.47 -0.31 4.64 16 36 H 0.10 2.04 7.65 -52.48 -0.40 1.64 16 37 H 0.10 1.90 8.06 -52.49 -0.42 1.48 16 38 H 0.12 3.05 6.53 -52.48 -0.34 2.70 16 39 H 0.28 6.32 8.30 -40.82 -0.34 5.98 16 40 H 0.11 2.49 6.06 -52.49 -0.32 2.17 16 41 H 0.11 1.11 5.64 -51.93 -0.29 0.82 16 42 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.10 1.51 8.09 -51.93 -0.42 1.09 16 44 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 LS Contribution 360.68 15.07 5.44 5.44 Total: -1.00 -28.61 360.68 -10.89 -39.49 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: -6.28 Total: 13.28 kcal Atomic # 6 Polarization: -41.03 SS G_CDS: -3.24 Total: -44.27 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: 0.62 Total: -35.25 kcal Atomic # 8 Polarization: -39.19 SS G_CDS: -1.80 Total: -41.00 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.03 Total: 13.04 kcal Atomic # 16 Polarization: 49.87 SS G_CDS: -0.59 Total: 49.28 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -28.61 -10.89 -39.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595370175.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.775 kcal (2) G-P(sol) polarization free energy of solvation -28.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds