Wall clock time and date at job start Tue Mar 31 2020 13:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46999 * 2 1 4 4 C 1.52999 * 109.46809 * 119.99875 * 2 1 3 5 5 C 1.52993 * 109.47235 * 64.61310 * 4 2 1 6 6 N 1.46504 * 115.55190 * 79.27306 * 5 4 2 7 7 S 1.65600 * 120.00109 * 41.11734 * 6 5 4 8 8 O 1.42100 * 106.39911 * 173.06899 * 7 6 5 9 9 O 1.42097 * 106.40134 * 305.98625 * 7 6 5 10 10 C 1.76202 * 107.21535 * 59.53025 * 7 6 5 11 11 C 1.38653 * 119.87735 * 87.98976 * 10 7 6 12 12 C 1.38612 * 120.50404 * 179.97438 * 11 10 7 13 13 C 1.37633 * 120.24437 * 0.02562 * 12 11 10 14 14 C 1.40701 * 119.74959 * 359.97438 * 13 12 11 15 15 C 1.41393 * 120.24516 * 179.97438 * 14 13 12 16 16 H 1.08007 * 119.99946 * 145.47744 * 15 14 13 17 17 C 1.39938 * 120.00402 * 325.47575 * 15 14 13 18 18 N 1.30828 * 119.99880 * 353.45096 * 17 15 14 19 19 Si 1.86797 * 120.00379 * 173.45236 * 17 15 14 20 20 H 1.48496 * 109.47526 * 94.98794 * 19 17 15 21 21 H 1.48502 * 109.47032 * 214.99007 * 19 17 15 22 22 H 1.48507 * 109.47042 * 334.98677 * 19 17 15 23 23 C 1.37600 * 119.87208 * 267.71114 * 10 7 6 24 24 C 1.53003 * 117.49901 * 293.59724 * 5 4 2 25 25 C 1.52998 * 60.03443 * 252.47484 * 24 5 4 26 26 H 1.09001 * 109.47287 * 291.11300 * 1 2 3 27 27 H 1.09002 * 109.47070 * 51.11102 * 1 2 3 28 28 H 1.09002 * 109.47058 * 171.11140 * 1 2 3 29 29 H 1.08990 * 109.47264 * 239.99877 * 2 1 3 30 30 H 1.09002 * 109.46894 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.46954 * 299.99818 * 3 2 1 32 32 H 1.09001 * 109.46866 * 60.00083 * 3 2 1 33 33 H 1.09005 * 109.47159 * 304.60769 * 4 2 1 34 34 H 1.09007 * 109.46951 * 184.61600 * 4 2 1 35 35 H 0.97003 * 119.99627 * 221.12716 * 6 5 4 36 36 H 1.08006 * 119.74863 * 359.97396 * 11 10 7 37 37 H 1.07994 * 119.87561 * 180.02562 * 12 11 10 38 38 H 1.08004 * 120.12776 * 179.97438 * 13 12 11 39 39 H 0.97001 * 120.00187 * 180.02562 * 18 17 15 40 40 H 1.07996 * 120.12893 * 0.02562 * 23 10 7 41 41 H 1.09003 * 117.49714 * 359.97438 * 24 5 4 42 42 H 1.09003 * 117.49529 * 144.97489 * 24 5 4 43 43 H 1.09001 * 117.49613 * 107.49975 * 25 24 5 44 44 H 1.09001 * 117.50042 * 252.52463 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6268 -2.1932 1.1927 6 7 2.4519 -3.0486 0.3360 7 16 4.0980 -2.8682 0.3253 8 8 4.6130 -3.9317 -0.4641 9 8 4.3498 -1.4985 0.0432 10 6 4.6642 -3.1499 1.9699 11 6 4.9731 -4.4369 2.3831 12 6 5.4200 -4.6733 3.6737 13 6 5.5616 -3.6301 4.5603 14 6 5.2512 -2.3199 4.1521 15 6 5.3922 -1.2405 5.0544 16 1 5.7051 -0.2719 4.6931 17 6 5.1265 -1.4270 6.4156 18 7 4.6257 -2.5605 6.8350 19 14 5.4868 -0.0576 7.6339 20 1 4.2536 0.7367 7.8649 21 1 5.9448 -0.6456 8.9183 22 1 6.5487 0.8248 7.0869 23 6 4.8037 -2.0911 2.8375 24 6 0.1328 -2.5116 1.2798 25 6 1.0495 -2.8157 2.4664 26 1 -0.3634 0.3702 0.9587 27 1 -0.3633 0.6452 -0.7999 28 1 -0.3633 -1.0153 -0.1588 29 1 1.8933 -0.5138 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6107 -0.2572 2.1373 34 1 3.1268 -0.6502 1.2916 35 1 2.0339 -3.7205 -0.2251 36 1 4.8645 -5.2616 1.6941 37 1 5.6581 -5.6797 3.9847 38 1 5.9096 -3.8164 5.5656 39 1 4.4412 -2.6897 7.7785 40 1 4.5665 -1.0889 2.5123 41 1 -0.5557 -1.6723 1.3779 42 1 -0.2362 -3.3572 0.6993 43 1 0.9639 -2.1764 3.3452 44 1 1.2838 -3.8613 2.6664 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595370175.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:06 Heat of formation + Delta-G solvation = -57.773721 kcal Electronic energy + Delta-G solvation = -26553.399448 eV Core-core repulsion = 22983.126718 eV Total energy + Delta-G solvation = -3570.272730 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.10363 -39.41921 -38.20639 -36.91400 -35.81840 -35.56167 -33.12502 -31.87394 -31.61883 -28.50866 -27.93903 -27.28646 -23.68491 -23.17710 -22.81701 -21.92220 -21.14380 -20.25841 -19.43213 -18.59917 -17.77359 -17.18909 -16.94854 -16.50875 -16.17802 -16.04558 -15.54353 -15.19685 -15.06860 -14.65706 -14.35318 -14.19403 -13.76817 -13.62757 -13.36499 -13.27053 -13.06558 -13.04472 -12.96862 -12.95279 -12.76638 -12.69882 -12.50331 -12.47893 -12.22108 -12.11603 -11.76010 -11.68738 -11.52055 -11.37645 -11.21217 -11.10866 -10.72528 -9.94300 -9.80680 -9.42918 -8.62410 -6.44679 -0.49191 0.41475 0.85775 1.38955 1.44396 1.51694 2.06161 2.20797 2.60550 2.78356 2.84354 3.49744 3.50950 3.66405 3.93339 3.98962 4.08789 4.24728 4.29846 4.35076 4.40375 4.47862 4.79348 4.82352 4.86459 4.89027 4.91255 4.93781 5.06520 5.07561 5.12814 5.18588 5.24991 5.27176 5.30376 5.30807 5.43109 5.48190 5.55999 5.60734 5.64412 5.87167 5.99221 6.10939 6.15510 6.55419 6.85040 6.88867 8.36401 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011962 B = 0.005302 C = 0.004405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.258286 B = 5279.918678 C = 6354.757677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.084 4.084 3 C -0.148 4.148 4 C -0.116 4.116 5 C 0.096 3.904 6 N -1.070 6.070 7 S 2.714 3.286 8 O -0.996 6.996 9 O -0.977 6.977 10 C -0.641 4.641 11 C -0.138 4.138 12 C -0.128 4.128 13 C -0.124 4.124 14 C 0.065 3.935 15 C -0.501 4.501 16 H 0.076 0.924 17 C 0.038 3.962 18 N -0.838 5.838 19 Si 0.979 3.021 20 H -0.263 1.263 21 H -0.268 1.268 22 H -0.261 1.261 23 C -0.118 4.118 24 C -0.141 4.141 25 C -0.196 4.196 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.077 0.923 29 H 0.060 0.940 30 H 0.039 0.961 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.427 0.573 36 H 0.127 0.873 37 H 0.125 0.875 38 H 0.108 0.892 39 H 0.287 0.713 40 H 0.114 0.886 41 H 0.131 0.869 42 H 0.118 0.882 43 H 0.092 0.908 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.649 1.607 -7.795 13.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.103 4.103 3 C -0.206 4.206 4 C -0.155 4.155 5 C 0.007 3.993 6 N -0.829 5.829 7 S 2.808 3.192 8 O -0.986 6.986 9 O -0.967 6.967 10 C -0.730 4.730 11 C -0.159 4.159 12 C -0.147 4.147 13 C -0.144 4.144 14 C 0.062 3.938 15 C -0.531 4.531 16 H 0.094 0.906 17 C -0.176 4.176 18 N -0.465 5.465 19 Si 0.800 3.200 20 H -0.188 1.188 21 H -0.192 1.192 22 H -0.185 1.185 23 C -0.138 4.138 24 C -0.180 4.180 25 C -0.235 4.235 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.096 0.904 29 H 0.078 0.922 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.265 0.735 36 H 0.145 0.855 37 H 0.143 0.857 38 H 0.126 0.874 39 H 0.098 0.902 40 H 0.132 0.868 41 H 0.149 0.851 42 H 0.137 0.863 43 H 0.110 0.890 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.113 1.826 -8.249 13.178 hybrid contribution 0.366 -0.211 1.447 1.508 sum -9.747 1.615 -6.802 11.995 Atomic orbital electron populations 1.22226 0.93761 1.03096 1.02088 1.20931 0.96794 0.95638 0.96906 1.21842 1.00560 0.96079 1.02081 1.21916 1.03169 0.90792 0.99614 1.20503 0.93874 0.89883 0.95056 1.54610 1.23621 1.48956 1.55723 1.00962 0.72389 0.72671 0.73205 1.93490 1.78649 1.57587 1.68900 1.93500 1.84556 1.34774 1.83841 1.30176 1.18726 1.00659 1.23464 1.20459 1.04507 0.94266 0.96638 1.21124 1.00998 0.98729 0.93863 1.21602 1.00358 0.93411 0.98988 1.18008 0.89826 0.93837 0.92080 1.19737 1.43181 0.97369 0.92825 0.90625 1.26594 0.91775 0.98903 1.00301 1.69782 1.32807 1.25972 1.17928 0.85226 0.79575 0.78115 0.77061 1.18757 1.19209 1.18515 1.20965 1.01781 0.96419 0.94685 1.23729 0.90222 1.04586 0.99436 1.23511 1.04942 1.02005 0.93090 0.92149 0.92175 0.90384 0.92179 0.94165 0.91570 0.92353 0.90135 0.90528 0.73517 0.85493 0.85698 0.87389 0.90223 0.86815 0.85072 0.86334 0.88982 0.89251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 7.65 71.98 0.55 -2.23 16 2 C -0.08 -2.09 2.91 -10.79 -0.03 -2.12 16 3 C -0.15 -3.64 9.18 71.98 0.66 -2.98 16 4 C -0.12 -3.42 4.23 30.59 0.13 -3.29 16 5 C 0.10 2.59 2.26 3.63 0.01 2.60 16 6 N -1.07 -29.68 6.04 -152.11 -0.92 -30.59 16 7 S 2.71 99.15 5.47 -56.49 -0.31 98.84 16 8 O -1.00 -39.56 17.32 -128.00 -2.22 -41.78 16 9 O -0.98 -38.91 14.19 -128.00 -1.82 -40.73 16 10 C -0.64 -27.51 5.82 22.22 0.13 -27.39 16 11 C -0.14 -5.86 9.53 22.46 0.21 -5.65 16 12 C -0.13 -5.67 10.02 22.22 0.22 -5.45 16 13 C -0.12 -6.23 8.62 22.73 0.20 -6.04 16 14 C 0.07 3.41 5.49 -21.29 -0.12 3.30 16 15 C -0.50 -26.18 9.04 23.46 0.21 -25.97 16 16 H 0.08 3.86 7.85 -2.91 -0.02 3.84 16 17 C 0.04 1.83 5.30 85.25 0.45 2.28 16 18 N -0.84 -42.15 11.03 21.82 0.24 -41.91 16 19 Si 0.98 37.47 29.56 68.60 2.03 39.50 16 20 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 21 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 22 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 23 C -0.12 -5.60 9.05 22.73 0.21 -5.39 16 24 C -0.14 -2.72 8.06 30.59 0.25 -2.47 16 25 C -0.20 -5.34 10.11 30.62 0.31 -5.03 16 26 H 0.06 1.01 7.85 -2.39 -0.02 0.99 16 27 H 0.06 0.95 8.12 -2.39 -0.02 0.93 16 28 H 0.08 1.21 5.21 -2.39 -0.01 1.20 16 29 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.08 2.26 7.95 -2.38 -0.02 2.24 16 34 H 0.08 2.74 3.38 -2.38 -0.01 2.73 16 35 H 0.43 9.12 8.91 -96.74 -0.86 8.26 16 36 H 0.13 4.76 7.65 -2.91 -0.02 4.74 16 37 H 0.13 4.73 8.06 -2.91 -0.02 4.70 16 38 H 0.11 5.64 6.53 -2.91 -0.02 5.62 16 39 H 0.29 13.14 8.30 -92.71 -0.77 12.37 16 40 H 0.11 5.27 6.06 -2.91 -0.02 5.26 16 41 H 0.13 2.06 5.64 -2.39 -0.01 2.05 16 42 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.09 2.69 8.09 -2.39 -0.02 2.67 16 44 H 0.09 2.58 8.14 -2.39 -0.02 2.57 16 Total: -1.00 -63.03 360.68 0.55 -62.48 By element: Atomic # 1 Polarization: 39.87 SS G_CDS: 0.16 Total: 40.02 kcal Atomic # 6 Polarization: -89.22 SS G_CDS: 3.39 Total: -85.83 kcal Atomic # 7 Polarization: -71.82 SS G_CDS: -0.68 Total: -72.50 kcal Atomic # 8 Polarization: -78.47 SS G_CDS: -4.03 Total: -82.51 kcal Atomic # 14 Polarization: 37.47 SS G_CDS: 2.03 Total: 39.50 kcal Atomic # 16 Polarization: 99.15 SS G_CDS: -0.31 Total: 98.84 kcal Total: -63.03 0.55 -62.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595370175.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.703 kcal (2) G-P(sol) polarization free energy of solvation -63.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds