Wall clock time and date at job start Tue Mar 31 2020 14:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50697 * 119.99631 * 2 1 4 4 C 1.53005 * 109.47120 * 125.00231 * 3 2 1 5 5 C 1.53001 * 109.47207 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.46852 * 299.99647 * 5 4 3 7 7 C 1.53000 * 109.47454 * 59.99406 * 5 4 3 8 8 N 1.46497 * 109.47213 * 179.97438 * 5 4 3 9 9 S 1.65601 * 120.00120 * 182.03667 * 8 5 4 10 10 O 1.42103 * 106.40080 * 182.05771 * 9 8 5 11 11 O 1.42097 * 106.40213 * 314.97803 * 9 8 5 12 12 C 1.76195 * 107.21513 * 68.51799 * 9 8 5 13 13 C 1.38658 * 119.87597 * 252.28069 * 12 9 8 14 14 C 1.38618 * 120.49908 * 179.72496 * 13 12 9 15 15 C 1.37638 * 120.24855 * 0.55175 * 14 13 12 16 16 C 1.40695 * 119.74599 * 359.72753 * 15 14 13 17 17 C 1.41398 * 120.24573 * 180.02562 * 16 15 14 18 18 H 1.07997 * 119.99908 * 148.56158 * 17 16 15 19 19 C 1.39945 * 119.99687 * 328.55976 * 17 16 15 20 20 N 1.30819 * 120.00376 * 347.19626 * 19 17 16 21 21 Si 1.86804 * 119.99675 * 167.19307 * 19 17 16 22 22 H 1.48497 * 109.46991 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47139 * 119.99884 * 21 19 17 24 24 H 1.48504 * 109.47126 * 240.00088 * 21 19 17 25 25 C 1.37604 * 119.87632 * 72.55940 * 12 9 8 26 26 H 1.08003 * 120.00043 * 359.97438 * 1 2 3 27 27 H 1.08000 * 119.99885 * 180.02562 * 1 2 3 28 28 H 1.07998 * 119.99738 * 179.97438 * 2 1 3 29 29 H 1.09004 * 109.47813 * 4.99957 * 3 2 1 30 30 H 1.09006 * 109.47220 * 244.99585 * 3 2 1 31 31 H 1.08997 * 109.47169 * 59.99612 * 4 3 2 32 32 H 1.08995 * 109.46778 * 299.99355 * 4 3 2 33 33 H 1.09001 * 109.46942 * 173.54872 * 6 5 4 34 34 H 1.08998 * 109.47022 * 293.54922 * 6 5 4 35 35 H 1.09005 * 109.47307 * 53.55212 * 6 5 4 36 36 H 1.09002 * 109.47190 * 314.49016 * 7 5 4 37 37 H 1.09004 * 109.46251 * 74.48382 * 7 5 4 38 38 H 1.08991 * 109.47182 * 194.48148 * 7 5 4 39 39 H 0.96998 * 119.99873 * 2.04130 * 8 5 4 40 40 H 1.07999 * 119.75034 * 0.02562 * 13 12 9 41 41 H 1.08001 * 119.87620 * 180.25580 * 14 13 12 42 42 H 1.08004 * 120.12530 * 179.74980 * 15 14 13 43 43 H 0.97002 * 120.00224 * 180.02562 * 20 19 17 44 44 H 1.08000 * 120.12294 * 359.96937 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.8004 2.6579 1.1813 6 6 4.5834 2.7941 -0.1261 7 6 2.8113 3.8185 1.3066 8 7 4.7302 2.6850 2.3130 9 16 5.6584 4.0282 2.5901 10 8 6.4762 3.7262 3.7123 11 8 6.1832 4.4203 1.3291 12 6 4.5710 5.3176 3.0993 13 6 4.2952 6.3688 2.2382 14 6 3.4372 7.3871 2.6233 15 6 2.8578 7.3706 3.8717 16 6 3.1350 6.3120 4.7560 17 6 2.5452 6.2841 6.0408 18 1 2.3168 5.3385 6.5098 19 6 2.2573 7.4820 6.7046 20 7 2.7519 8.6098 6.2630 21 14 1.1668 7.4706 8.2212 22 1 0.7380 6.0790 8.5121 23 1 1.9245 8.0080 9.3798 24 1 -0.0296 8.3159 7.9771 25 6 4.0031 5.2806 4.3521 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8499 -0.9353 0.0004 29 1 1.3585 2.1317 0.0896 30 1 2.6213 1.4026 -0.9314 31 1 3.7399 0.5066 1.0921 32 1 2.4772 1.2357 2.1130 33 1 5.0358 3.7845 -0.1772 34 1 5.3650 2.0353 -0.1622 35 1 3.9071 2.6597 -0.9704 36 1 1.9743 3.6576 0.6270 37 1 2.4424 3.8724 2.3309 38 1 3.3124 4.7521 1.0513 39 1 4.8022 1.9162 2.9000 40 1 4.7485 6.3919 1.2582 41 1 3.2262 8.1990 1.9430 42 1 2.1927 8.1672 4.1713 43 1 2.5527 9.4401 6.7234 44 1 4.2225 4.4629 5.0227 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595400655.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:46 Heat of formation + Delta-G solvation = -48.645934 kcal Electronic energy + Delta-G solvation = -25921.965280 eV Core-core repulsion = 22352.088361 eV Total energy + Delta-G solvation = -3569.876920 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -38.61031 -37.65434 -36.58515 -35.28602 -34.88508 -33.80013 -31.12686 -30.09697 -29.91655 -28.58006 -27.02752 -25.45204 -24.29951 -21.87075 -21.02942 -20.20835 -19.55471 -18.84743 -17.82356 -17.14650 -16.03314 -15.88010 -15.49523 -15.13623 -14.82065 -14.61474 -14.23314 -13.92977 -13.53755 -13.43045 -13.34548 -12.86053 -12.64377 -12.55330 -12.34549 -12.01456 -11.79057 -11.60274 -11.46302 -11.38400 -11.33159 -11.22849 -11.10259 -10.99427 -10.93707 -10.85991 -10.78665 -10.55803 -10.24773 -9.75313 -9.68227 -9.44155 -9.35233 -9.15072 -8.01372 -7.60889 -6.86852 -4.53918 1.06340 2.12873 2.19369 2.62496 3.01780 3.04008 3.06797 3.54618 3.85841 4.25801 4.46448 4.58235 4.80229 4.97796 5.00873 5.08270 5.17383 5.32916 5.35628 5.40987 5.48091 5.69629 5.72602 5.85637 5.98608 6.01035 6.06978 6.11550 6.16162 6.18918 6.37521 6.46019 6.59460 6.60627 6.66226 6.67719 6.73545 6.85765 7.05793 7.20921 7.28952 7.36117 7.69707 7.81403 7.93339 8.40095 8.68548 8.72965 10.10760 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012528 B = 0.004134 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.441418 B = 6770.909085 C = 7950.185639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.151 4.151 3 C -0.100 4.100 4 C -0.110 4.110 5 C 0.183 3.817 6 C -0.184 4.184 7 C -0.191 4.191 8 N -1.113 6.113 9 S 2.688 3.312 10 O -0.976 6.976 11 O -0.972 6.972 12 C -0.630 4.630 13 C -0.140 4.140 14 C -0.123 4.123 15 C -0.108 4.108 16 C 0.095 3.905 17 C -0.468 4.468 18 H 0.081 0.919 19 C 0.075 3.925 20 N -0.803 5.803 21 Si 0.911 3.089 22 H -0.260 1.260 23 H -0.274 1.274 24 H -0.272 1.272 25 C -0.117 4.117 26 H 0.097 0.903 27 H 0.094 0.906 28 H 0.106 0.894 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.412 0.588 40 H 0.111 0.889 41 H 0.098 0.902 42 H 0.119 0.881 43 H 0.282 0.718 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.503 -11.189 -9.849 15.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.169 4.169 3 C -0.137 4.137 4 C -0.149 4.149 5 C 0.095 3.905 6 C -0.242 4.242 7 C -0.249 4.249 8 N -0.871 5.871 9 S 2.784 3.216 10 O -0.967 6.967 11 O -0.962 6.962 12 C -0.721 4.721 13 C -0.161 4.161 14 C -0.142 4.142 15 C -0.128 4.128 16 C 0.092 3.908 17 C -0.498 4.498 18 H 0.099 0.901 19 C -0.142 4.142 20 N -0.429 5.429 21 Si 0.736 3.264 22 H -0.184 1.184 23 H -0.199 1.199 24 H -0.197 1.197 25 C -0.138 4.138 26 H 0.115 0.885 27 H 0.112 0.888 28 H 0.124 0.876 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.113 0.887 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.245 0.755 40 H 0.129 0.871 41 H 0.116 0.884 42 H 0.137 0.863 43 H 0.093 0.907 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.562 -10.752 -10.003 14.908 hybrid contribution -1.147 0.132 1.325 1.758 sum -3.709 -10.620 -8.678 14.207 Atomic orbital electron populations 1.23860 0.96038 1.01784 1.01814 1.22977 0.96008 0.98537 0.99351 1.20979 0.98331 0.95543 0.98851 1.21726 0.97830 0.96244 0.99111 1.20078 0.88807 0.96235 0.85418 1.22748 1.00198 1.05427 0.95874 1.22815 0.99710 0.98437 1.03937 1.55716 1.58951 1.32788 1.39598 1.01655 0.73583 0.73194 0.73120 1.93547 1.65742 1.84401 1.52978 1.93463 1.77424 1.82900 1.42444 1.29774 1.21114 1.16671 1.04568 1.20102 1.02451 0.95325 0.98196 1.20815 0.98847 0.97662 0.96895 1.21553 0.99735 0.99896 0.91638 1.17650 0.89491 0.90759 0.92901 1.19572 1.36036 0.93586 1.00581 0.90117 1.25871 0.94323 0.94912 0.99121 1.69759 1.34899 0.99561 1.38635 0.86206 0.79964 0.79610 0.80646 1.18398 1.19896 1.19734 1.20711 0.98082 1.01509 0.93532 0.88513 0.88776 0.87609 0.90552 0.90281 0.91295 0.90960 0.88659 0.92354 0.91661 0.91095 0.90716 0.90346 0.75475 0.87127 0.88392 0.86296 0.90740 0.87672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.66 14.32 29.02 0.42 -1.24 16 2 C -0.15 -1.29 9.52 -36.03 -0.34 -1.63 16 3 C -0.10 -0.90 5.00 -27.88 -0.14 -1.04 16 4 C -0.11 -1.11 4.37 -26.73 -0.12 -1.23 16 5 C 0.18 2.30 0.92 -131.82 -0.12 2.18 16 6 C -0.18 -2.29 7.79 37.16 0.29 -2.00 16 7 C -0.19 -2.65 7.14 37.16 0.27 -2.39 16 8 N -1.11 -15.73 5.54 0.54 0.00 -15.73 16 9 S 2.69 49.66 5.51 -107.50 -0.59 49.07 16 10 O -0.98 -20.97 17.81 -57.17 -1.02 -21.99 16 11 O -0.97 -18.74 13.67 -57.17 -0.78 -19.52 16 12 C -0.63 -13.20 3.89 -39.66 -0.15 -13.35 16 13 C -0.14 -2.90 7.29 -39.29 -0.29 -3.18 16 14 C -0.12 -2.65 10.02 -39.66 -0.40 -3.05 16 15 C -0.11 -2.62 8.64 -38.87 -0.34 -2.96 16 16 C 0.10 2.39 5.50 -106.82 -0.59 1.80 16 17 C -0.47 -11.85 9.04 -37.74 -0.34 -12.19 16 18 H 0.08 1.96 7.88 -52.49 -0.41 1.55 16 19 C 0.07 1.81 5.19 -17.34 -0.09 1.72 16 20 N -0.80 -20.16 11.15 55.55 0.62 -19.54 16 21 Si 0.91 18.16 29.58 -169.99 -5.03 13.13 16 22 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 23 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 24 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 25 C -0.12 -2.71 9.30 -38.87 -0.36 -3.07 16 26 H 0.10 0.80 7.84 -52.48 -0.41 0.39 16 27 H 0.09 0.68 8.06 -52.49 -0.42 0.26 16 28 H 0.11 0.81 8.06 -52.49 -0.42 0.39 16 29 H 0.08 0.70 5.80 -51.93 -0.30 0.40 16 30 H 0.08 0.66 6.29 -51.93 -0.33 0.34 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.09 1.40 5.60 -51.93 -0.29 1.11 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.66 6.11 -51.93 -0.32 0.34 16 36 H 0.07 0.82 5.79 -51.93 -0.30 0.52 16 37 H 0.07 1.16 7.76 -51.93 -0.40 0.76 16 38 H 0.08 1.21 4.93 -51.93 -0.26 0.95 16 39 H 0.41 4.90 8.61 -34.47 -0.30 4.60 16 40 H 0.11 2.10 7.27 -52.49 -0.38 1.72 16 41 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 42 H 0.12 2.95 6.51 -52.48 -0.34 2.61 16 43 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 44 H 0.11 2.33 8.04 -52.49 -0.42 1.90 16 LS Contribution 357.85 15.07 5.39 5.39 Total: -1.00 -29.46 357.85 -9.84 -39.30 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -6.13 Total: 11.51 kcal Atomic # 6 Polarization: -39.32 SS G_CDS: -2.31 Total: -41.63 kcal Atomic # 7 Polarization: -35.89 SS G_CDS: 0.62 Total: -35.27 kcal Atomic # 8 Polarization: -39.70 SS G_CDS: -1.80 Total: -41.50 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -5.03 Total: 13.13 kcal Atomic # 16 Polarization: 49.66 SS G_CDS: -0.59 Total: 49.07 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.46 -9.84 -39.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595400655.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.341 kcal (2) G-P(sol) polarization free energy of solvation -29.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds