Wall clock time and date at job start Tue Mar 31 2020 14:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50697 * 119.99631 * 2 1 4 4 C 1.53005 * 109.47120 * 125.00231 * 3 2 1 5 5 C 1.53001 * 109.47207 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.46852 * 299.99647 * 5 4 3 7 7 C 1.53000 * 109.47454 * 59.99406 * 5 4 3 8 8 N 1.46497 * 109.47213 * 179.97438 * 5 4 3 9 9 S 1.65601 * 120.00120 * 182.03667 * 8 5 4 10 10 O 1.42103 * 106.40080 * 182.05771 * 9 8 5 11 11 O 1.42097 * 106.40213 * 314.97803 * 9 8 5 12 12 C 1.76195 * 107.21513 * 68.51799 * 9 8 5 13 13 C 1.38658 * 119.87597 * 252.28069 * 12 9 8 14 14 C 1.38618 * 120.49908 * 179.72496 * 13 12 9 15 15 C 1.37638 * 120.24855 * 0.55175 * 14 13 12 16 16 C 1.40695 * 119.74599 * 359.72753 * 15 14 13 17 17 C 1.41398 * 120.24573 * 180.02562 * 16 15 14 18 18 H 1.07997 * 119.99908 * 148.56158 * 17 16 15 19 19 C 1.39945 * 119.99687 * 328.55976 * 17 16 15 20 20 N 1.30819 * 120.00376 * 347.19626 * 19 17 16 21 21 Si 1.86804 * 119.99675 * 167.19307 * 19 17 16 22 22 H 1.48497 * 109.46991 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47139 * 119.99884 * 21 19 17 24 24 H 1.48504 * 109.47126 * 240.00088 * 21 19 17 25 25 C 1.37604 * 119.87632 * 72.55940 * 12 9 8 26 26 H 1.08003 * 120.00043 * 359.97438 * 1 2 3 27 27 H 1.08000 * 119.99885 * 180.02562 * 1 2 3 28 28 H 1.07998 * 119.99738 * 179.97438 * 2 1 3 29 29 H 1.09004 * 109.47813 * 4.99957 * 3 2 1 30 30 H 1.09006 * 109.47220 * 244.99585 * 3 2 1 31 31 H 1.08997 * 109.47169 * 59.99612 * 4 3 2 32 32 H 1.08995 * 109.46778 * 299.99355 * 4 3 2 33 33 H 1.09001 * 109.46942 * 173.54872 * 6 5 4 34 34 H 1.08998 * 109.47022 * 293.54922 * 6 5 4 35 35 H 1.09005 * 109.47307 * 53.55212 * 6 5 4 36 36 H 1.09002 * 109.47190 * 314.49016 * 7 5 4 37 37 H 1.09004 * 109.46251 * 74.48382 * 7 5 4 38 38 H 1.08991 * 109.47182 * 194.48148 * 7 5 4 39 39 H 0.96998 * 119.99873 * 2.04130 * 8 5 4 40 40 H 1.07999 * 119.75034 * 0.02562 * 13 12 9 41 41 H 1.08001 * 119.87620 * 180.25580 * 14 13 12 42 42 H 1.08004 * 120.12530 * 179.74980 * 15 14 13 43 43 H 0.97002 * 120.00224 * 180.02562 * 20 19 17 44 44 H 1.08000 * 120.12294 * 359.96937 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.8004 2.6579 1.1813 6 6 4.5834 2.7941 -0.1261 7 6 2.8113 3.8185 1.3066 8 7 4.7302 2.6850 2.3130 9 16 5.6584 4.0282 2.5901 10 8 6.4762 3.7262 3.7123 11 8 6.1832 4.4203 1.3291 12 6 4.5710 5.3176 3.0993 13 6 4.2952 6.3688 2.2382 14 6 3.4372 7.3871 2.6233 15 6 2.8578 7.3706 3.8717 16 6 3.1350 6.3120 4.7560 17 6 2.5452 6.2841 6.0408 18 1 2.3168 5.3385 6.5098 19 6 2.2573 7.4820 6.7046 20 7 2.7519 8.6098 6.2630 21 14 1.1668 7.4706 8.2212 22 1 0.7380 6.0790 8.5121 23 1 1.9245 8.0080 9.3798 24 1 -0.0296 8.3159 7.9771 25 6 4.0031 5.2806 4.3521 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8499 -0.9353 0.0004 29 1 1.3585 2.1317 0.0896 30 1 2.6213 1.4026 -0.9314 31 1 3.7399 0.5066 1.0921 32 1 2.4772 1.2357 2.1130 33 1 5.0358 3.7845 -0.1772 34 1 5.3650 2.0353 -0.1622 35 1 3.9071 2.6597 -0.9704 36 1 1.9743 3.6576 0.6270 37 1 2.4424 3.8724 2.3309 38 1 3.3124 4.7521 1.0513 39 1 4.8022 1.9162 2.9000 40 1 4.7485 6.3919 1.2582 41 1 3.2262 8.1990 1.9430 42 1 2.1927 8.1672 4.1713 43 1 2.5527 9.4401 6.7234 44 1 4.2225 4.4629 5.0227 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595400655.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:46 Heat of formation + Delta-G solvation = -66.258544 kcal Electronic energy + Delta-G solvation = -25922.729020 eV Core-core repulsion = 22352.088361 eV Total energy + Delta-G solvation = -3570.640660 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.75472 -39.30635 -38.12365 -36.87223 -35.70890 -35.58255 -32.19659 -31.86207 -31.65899 -29.49568 -28.10313 -27.27423 -25.13526 -23.61322 -22.80705 -21.10280 -20.45623 -20.30275 -19.44774 -18.52640 -17.71981 -17.18032 -16.77195 -16.58318 -16.31467 -15.92604 -15.26473 -15.18725 -15.01897 -14.87739 -14.44730 -14.29773 -13.84823 -13.79024 -13.68352 -13.34767 -13.19931 -13.11993 -13.09212 -12.99395 -12.78744 -12.60136 -12.35404 -12.29678 -12.20995 -12.08013 -11.85117 -11.67239 -11.50339 -11.37340 -11.20343 -11.12510 -10.42992 -10.09371 -9.77419 -9.42739 -8.67467 -6.44336 -0.43699 0.43787 0.86295 1.37530 1.43860 1.49155 1.51848 2.14431 2.20119 2.59393 2.82271 3.48439 3.56687 3.74072 3.96971 4.07036 4.13054 4.29573 4.36392 4.46186 4.51278 4.58157 4.59607 4.81980 4.84087 4.90060 4.90859 5.05499 5.07576 5.09388 5.17847 5.21130 5.23514 5.27119 5.37563 5.44013 5.54045 5.58146 5.65653 5.87054 5.89792 5.96755 5.99134 6.12266 6.20024 6.54874 6.84043 6.87456 8.32493 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012528 B = 0.004134 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.441418 B = 6770.909085 C = 7950.185639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.156 4.156 3 C -0.098 4.098 4 C -0.104 4.104 5 C 0.180 3.820 6 C -0.186 4.186 7 C -0.193 4.193 8 N -1.099 6.099 9 S 2.713 3.287 10 O -1.006 7.006 11 O -0.976 6.976 12 C -0.633 4.633 13 C -0.133 4.133 14 C -0.124 4.124 15 C -0.128 4.128 16 C 0.067 3.933 17 C -0.504 4.504 18 H 0.078 0.922 19 C 0.035 3.965 20 N -0.837 5.837 21 Si 0.982 3.018 22 H -0.257 1.257 23 H -0.269 1.269 24 H -0.263 1.263 25 C -0.132 4.132 26 H 0.094 0.906 27 H 0.104 0.896 28 H 0.117 0.883 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.052 0.948 38 H 0.061 0.939 39 H 0.424 0.576 40 H 0.133 0.867 41 H 0.125 0.875 42 H 0.105 0.895 43 H 0.288 0.712 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.964 -12.683 -11.088 17.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.174 4.174 3 C -0.136 4.136 4 C -0.143 4.143 5 C 0.093 3.907 6 C -0.244 4.244 7 C -0.251 4.251 8 N -0.860 5.860 9 S 2.806 3.194 10 O -0.996 6.996 11 O -0.966 6.966 12 C -0.722 4.722 13 C -0.153 4.153 14 C -0.143 4.143 15 C -0.148 4.148 16 C 0.064 3.936 17 C -0.534 4.534 18 H 0.097 0.903 19 C -0.179 4.179 20 N -0.464 5.464 21 Si 0.803 3.197 22 H -0.181 1.181 23 H -0.194 1.194 24 H -0.188 1.188 25 C -0.153 4.153 26 H 0.112 0.888 27 H 0.122 0.878 28 H 0.135 0.865 29 H 0.090 0.910 30 H 0.108 0.892 31 H 0.103 0.897 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.109 0.891 36 H 0.113 0.887 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.261 0.739 40 H 0.151 0.849 41 H 0.143 0.857 42 H 0.123 0.877 43 H 0.099 0.901 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.030 -12.229 -11.241 16.884 hybrid contribution -0.963 0.523 1.536 1.887 sum -3.993 -11.706 -9.705 15.721 Atomic orbital electron populations 1.24006 0.96250 1.02251 1.01562 1.23051 0.96092 0.98712 0.99536 1.20970 0.98094 0.95795 0.98694 1.21694 0.98042 0.94960 0.99606 1.20281 0.88389 0.97236 0.84818 1.22752 1.00897 1.04306 0.96474 1.22826 1.00794 0.98328 1.03190 1.55420 1.58786 1.31482 1.40332 1.00940 0.73040 0.73138 0.72285 1.93506 1.66926 1.84776 1.54433 1.93469 1.77584 1.83395 1.42106 1.30226 1.20391 1.17846 1.03712 1.20425 1.01439 0.94559 0.98892 1.21112 0.98255 0.98581 0.96355 1.21525 1.00726 0.99735 0.92822 1.17971 0.90369 0.91830 0.93430 1.19824 1.37970 0.94211 1.01409 0.90342 1.26686 0.95068 0.94148 1.01976 1.69813 1.36042 1.00252 1.40255 0.85149 0.78124 0.79683 0.76719 1.18098 1.19446 1.18766 1.20787 0.98508 1.01360 0.94643 0.88758 0.87786 0.86502 0.90969 0.89215 0.89655 0.91291 0.90914 0.91564 0.89051 0.88736 0.92838 0.91968 0.73929 0.84929 0.85697 0.87733 0.90110 0.87646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.98 14.32 67.78 0.97 -2.01 16 2 C -0.16 -2.25 9.52 25.65 0.24 -2.01 16 3 C -0.10 -1.48 5.00 29.85 0.15 -1.33 16 4 C -0.10 -1.81 4.37 30.60 0.13 -1.68 16 5 C 0.18 4.15 0.92 3.61 0.00 4.16 16 6 C -0.19 -4.12 7.79 71.98 0.56 -3.56 16 7 C -0.19 -5.14 7.14 71.98 0.51 -4.62 16 8 N -1.10 -29.41 5.54 -152.21 -0.84 -30.25 16 9 S 2.71 98.05 5.51 -56.49 -0.31 97.74 16 10 O -1.01 -42.88 17.81 -128.00 -2.28 -45.16 16 11 O -0.98 -36.19 13.67 -128.00 -1.75 -37.94 16 12 C -0.63 -26.57 3.89 22.22 0.09 -26.48 16 13 C -0.13 -5.42 7.29 22.46 0.16 -5.26 16 14 C -0.12 -5.35 10.02 22.22 0.22 -5.12 16 15 C -0.13 -6.39 8.64 22.73 0.20 -6.19 16 16 C 0.07 3.49 5.50 -21.29 -0.12 3.37 16 17 C -0.50 -26.52 9.04 23.46 0.21 -26.31 16 18 H 0.08 3.98 7.88 -2.91 -0.02 3.95 16 19 C 0.03 1.73 5.19 85.26 0.44 2.17 16 20 N -0.84 -43.22 11.15 21.83 0.24 -42.97 16 21 Si 0.98 37.74 29.58 68.60 2.03 39.77 16 22 H -0.26 -9.64 7.11 99.48 0.71 -8.94 16 23 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 24 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 25 C -0.13 -6.28 9.30 22.73 0.21 -6.07 16 26 H 0.09 1.40 7.84 -2.91 -0.02 1.38 16 27 H 0.10 1.29 8.06 -2.91 -0.02 1.26 16 28 H 0.12 1.43 8.06 -2.91 -0.02 1.41 16 29 H 0.07 1.15 5.80 -2.39 -0.01 1.14 16 30 H 0.09 1.18 6.29 -2.38 -0.01 1.16 16 31 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.07 1.99 5.60 -2.39 -0.01 1.97 16 34 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.09 1.53 6.11 -2.38 -0.01 1.51 16 36 H 0.09 2.01 5.79 -2.39 -0.01 2.00 16 37 H 0.05 1.65 7.76 -2.38 -0.02 1.63 16 38 H 0.06 1.84 4.93 -2.39 -0.01 1.83 16 39 H 0.42 9.37 8.61 -96.75 -0.83 8.54 16 40 H 0.13 4.82 7.27 -2.91 -0.02 4.79 16 41 H 0.13 4.60 8.06 -2.91 -0.02 4.58 16 42 H 0.10 5.42 6.51 -2.91 -0.02 5.40 16 43 H 0.29 13.47 8.30 -92.71 -0.77 12.71 16 44 H 0.11 4.85 8.04 -2.91 -0.02 4.82 16 Total: -1.00 -64.36 357.85 1.26 -63.10 By element: Atomic # 1 Polarization: 36.49 SS G_CDS: 0.18 Total: 36.67 kcal Atomic # 6 Polarization: -84.94 SS G_CDS: 3.99 Total: -80.95 kcal Atomic # 7 Polarization: -72.62 SS G_CDS: -0.60 Total: -73.22 kcal Atomic # 8 Polarization: -79.07 SS G_CDS: -4.03 Total: -83.10 kcal Atomic # 14 Polarization: 37.74 SS G_CDS: 2.03 Total: 39.77 kcal Atomic # 16 Polarization: 98.05 SS G_CDS: -0.31 Total: 97.74 kcal Total: -64.36 1.26 -63.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595400655.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.163 kcal (2) G-P(sol) polarization free energy of solvation -64.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds