Wall clock time and date at job start Tue Mar 31 2020 14:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.76203 * 103.00269 * 2 1 4 4 C 1.39171 * 119.92978 * 0.02562 * 3 2 1 5 5 C 1.37996 * 120.31161 * 179.70356 * 4 3 2 6 6 C 1.38684 * 120.17246 * 0.55751 * 5 4 3 7 7 O 1.35755 * 120.06923 * 179.71984 * 6 5 4 8 8 C 1.40093 * 119.86556 * 359.44595 * 6 5 4 9 9 C 1.47541 * 120.15975 * 180.30119 * 8 6 5 10 10 O 1.21597 * 119.99604 * 359.97438 * 9 8 6 11 11 N 1.34771 * 120.00147 * 179.97438 * 9 8 6 12 12 C 1.46507 * 120.00207 * 179.97438 * 11 9 8 13 13 C 1.52989 * 109.47479 * 180.02562 * 12 11 9 14 14 C 1.52999 * 109.47318 * 300.00221 * 13 12 11 15 15 C 1.52999 * 109.46992 * 60.00157 * 13 12 11 16 16 C 1.53000 * 109.47205 * 180.02562 * 13 12 11 17 17 C 1.50699 * 109.47000 * 180.02562 * 16 13 12 18 18 H 1.08006 * 120.00286 * 359.97438 * 17 16 13 19 19 C 1.37882 * 120.00234 * 180.02562 * 17 16 13 20 20 N 1.31514 * 119.99389 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00577 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47211 * 89.99569 * 21 19 17 23 23 H 1.48489 * 109.47359 * 209.99981 * 21 19 17 24 24 H 1.48504 * 109.46862 * 330.00158 * 21 19 17 25 25 C 1.38472 * 119.93507 * 180.02562 * 3 2 1 26 26 H 1.08995 * 109.47361 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47459 * 300.00913 * 1 2 3 28 28 H 1.09002 * 109.47222 * 60.00279 * 1 2 3 29 29 H 1.08003 * 119.84611 * 359.97438 * 4 3 2 30 30 H 1.08004 * 119.91171 * 180.27497 * 5 4 3 31 31 H 0.96696 * 114.00160 * 269.72532 * 7 6 5 32 32 H 0.96994 * 120.00211 * 0.02562 * 11 9 8 33 33 H 1.09002 * 109.46799 * 300.00662 * 12 11 9 34 34 H 1.08998 * 109.46483 * 59.99942 * 12 11 9 35 35 H 1.09001 * 109.47084 * 60.00029 * 14 13 12 36 36 H 1.08996 * 109.47436 * 179.97438 * 14 13 12 37 37 H 1.08993 * 109.47517 * 300.00309 * 14 13 12 38 38 H 1.08996 * 109.47343 * 60.00182 * 15 13 12 39 39 H 1.09004 * 109.47411 * 179.97438 * 15 13 12 40 40 H 1.09001 * 109.47282 * 299.99892 * 15 13 12 41 41 H 1.08996 * 109.46992 * 299.99734 * 16 13 12 42 42 H 1.08993 * 109.47178 * 60.00497 * 16 13 12 43 43 H 0.97001 * 119.99698 * 180.02562 * 20 19 17 44 44 H 1.08003 * 120.08340 * 0.03352 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1914 2.6648 0.0005 5 6 1.4930 4.0114 0.0067 6 6 2.8152 4.4297 0.0008 7 8 3.1094 5.7549 0.0011 8 6 3.8467 3.4818 0.0002 9 6 5.2557 3.9195 0.0006 10 8 5.5238 5.1056 0.0009 11 7 6.2455 3.0049 0.0006 12 6 7.6446 3.4396 0.0004 13 6 8.5597 2.2135 -0.0003 14 6 8.2870 1.3729 1.2487 15 6 8.2864 1.3738 -1.2497 16 6 10.0208 2.6675 0.0002 17 6 10.9220 1.4597 -0.0011 18 1 10.4954 0.4675 -0.0017 19 6 12.2914 1.6213 -0.0004 20 7 12.8108 2.8295 0.0009 21 14 13.4086 0.1243 -0.0012 22 1 13.7052 -0.2713 -1.4015 23 1 14.6761 0.4521 0.6995 24 1 12.7326 -0.9982 0.6976 25 6 3.5351 2.1201 -0.0005 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5140 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 0.1598 2.3450 0.0005 30 1 0.6971 4.7415 0.0116 31 1 3.1944 6.1392 -0.8822 32 1 6.0317 2.0588 -0.0001 33 1 7.8390 4.0381 -0.8897 34 1 7.8391 4.0381 0.8903 35 1 7.2461 1.0494 1.2488 36 1 8.9386 0.4991 1.2480 37 1 8.4816 1.9710 2.1389 38 1 8.4807 1.9726 -2.1395 39 1 8.9386 0.5005 -1.2505 40 1 7.2455 1.0504 -1.2496 41 1 10.2153 3.2665 -0.8894 42 1 10.2152 3.2653 0.8905 43 1 13.7741 2.9432 0.0010 44 1 4.3252 1.3838 -0.0015 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597660734.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:37 Heat of formation + Delta-G solvation = -67.762868 kcal Electronic energy + Delta-G solvation = -24771.272985 eV Core-core repulsion = 21200.567093 eV Total energy + Delta-G solvation = -3570.705892 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.55038 -38.79009 -37.06866 -36.80534 -33.68284 -32.32544 -31.50259 -30.39810 -29.30361 -27.13576 -26.51068 -26.31199 -24.08148 -23.11408 -22.54095 -20.47428 -19.09673 -18.39378 -17.73035 -16.74494 -16.37496 -15.97252 -15.91053 -15.13292 -15.12305 -14.84273 -14.51095 -14.45177 -14.24309 -13.61602 -13.57245 -13.23253 -13.10948 -12.82149 -12.74538 -12.64777 -12.36321 -12.11986 -12.05459 -11.15520 -11.01203 -11.00554 -10.84375 -10.64290 -10.63442 -10.40288 -10.25078 -9.87640 -9.85234 -9.76976 -9.45305 -9.17020 -8.92182 -8.71786 -8.35206 -7.72568 -5.99270 -4.00498 0.45378 0.77520 1.08726 1.97232 2.69350 3.31597 3.32835 3.38799 3.40949 3.51562 3.95865 4.37403 4.41834 4.46072 4.57777 4.58850 4.82041 4.97509 5.15946 5.18475 5.36286 5.36599 5.52295 5.58541 5.62538 5.72408 5.75158 5.93721 6.16846 6.20304 6.22746 6.29978 6.39311 6.54750 6.63391 6.75223 7.06087 7.07779 7.12584 7.50600 7.64436 7.70638 7.76852 7.99434 8.37172 8.42238 9.04238 9.62598 11.12221 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.017050 B = 0.002777 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.873654 B =10078.952321 C =11516.597525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 S -0.107 6.107 3 C -0.105 4.105 4 C -0.097 4.097 5 C -0.136 4.136 6 C 0.163 3.837 7 O -0.475 6.475 8 C -0.139 4.139 9 C 0.550 3.450 10 O -0.524 6.524 11 N -0.716 5.716 12 C 0.129 3.871 13 C -0.073 4.073 14 C -0.128 4.128 15 C -0.127 4.127 16 C 0.036 3.964 17 C -0.511 4.511 18 H 0.060 0.940 19 C 0.056 3.944 20 N -0.895 5.895 21 Si 0.889 3.111 22 H -0.282 1.282 23 H -0.288 1.288 24 H -0.274 1.274 25 C -0.051 4.051 26 H 0.109 0.891 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.131 0.869 30 H 0.139 0.861 31 H 0.396 0.604 32 H 0.396 0.604 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.027 0.973 36 H 0.068 0.932 37 H 0.048 0.952 38 H 0.048 0.952 39 H 0.068 0.932 40 H 0.027 0.973 41 H 0.019 0.981 42 H 0.019 0.981 43 H 0.260 0.740 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.564 -3.203 -1.682 27.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.316 4.316 2 S 0.134 5.866 3 C -0.217 4.217 4 C -0.121 4.121 5 C -0.156 4.156 6 C 0.114 3.886 7 O -0.286 6.286 8 C -0.145 4.145 9 C 0.336 3.664 10 O -0.401 6.401 11 N -0.368 5.368 12 C 0.006 3.994 13 C -0.073 4.073 14 C -0.185 4.185 15 C -0.185 4.185 16 C -0.001 4.001 17 C -0.549 4.549 18 H 0.078 0.922 19 C -0.145 4.145 20 N -0.534 5.534 21 Si 0.717 3.283 22 H -0.208 1.208 23 H -0.213 1.213 24 H -0.199 1.199 25 C -0.076 4.076 26 H 0.128 0.872 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.149 0.851 30 H 0.156 0.844 31 H 0.254 0.746 32 H 0.233 0.767 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.046 0.954 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.087 0.913 40 H 0.047 0.953 41 H 0.037 0.963 42 H 0.037 0.963 43 H 0.070 0.930 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -26.536 -3.377 -1.073 26.771 hybrid contribution -0.204 -0.069 -0.472 0.518 sum -26.739 -3.446 -1.545 27.005 Atomic orbital electron populations 1.23708 0.94870 1.07333 1.05687 1.85706 1.06235 1.01978 1.92636 1.21586 0.96189 0.97226 1.06712 1.21171 0.98468 0.92448 0.99970 1.21319 0.95902 0.95932 1.02482 1.18462 0.90445 0.83971 0.95703 1.84783 1.92401 1.17930 1.33474 1.20497 0.94378 0.93230 1.06349 1.17960 0.84464 0.86236 0.77751 1.90812 1.84023 1.16161 1.49107 1.46159 1.07035 1.09498 1.74147 1.21667 0.77925 0.97796 1.01990 1.20913 0.98169 0.93125 0.95112 1.21769 0.98568 1.00833 0.97329 1.21767 0.98560 1.00838 0.97300 1.19089 0.86774 0.96739 0.97533 1.21182 0.90723 0.92741 1.50272 0.92240 1.25015 0.98382 0.95552 0.95558 1.69966 1.11697 1.20868 1.50861 0.86647 0.80375 0.83270 0.78017 1.20783 1.21349 1.19924 1.20865 0.94917 0.94518 0.97272 0.87209 0.89639 0.89650 0.85094 0.84355 0.74620 0.76716 0.91619 0.91590 0.95356 0.91328 0.93273 0.93302 0.91333 0.95350 0.96312 0.96282 0.93042 0.84609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.14 101.05 0.92 0.26 16 2 S -0.11 -0.88 22.55 -107.50 -2.42 -3.31 16 3 C -0.10 -1.00 6.10 -39.15 -0.24 -1.24 16 4 C -0.10 -0.79 9.35 -39.32 -0.37 -1.15 16 5 C -0.14 -1.21 9.97 -39.51 -0.39 -1.60 16 6 C 0.16 1.91 6.72 -38.72 -0.26 1.65 16 7 O -0.47 -5.83 11.56 -40.90 -0.47 -6.30 16 8 C -0.14 -1.79 5.88 -104.87 -0.62 -2.41 16 9 C 0.55 8.73 7.76 -12.47 -0.10 8.64 16 10 O -0.52 -10.01 15.15 -16.65 -0.25 -10.26 16 11 N -0.72 -10.85 4.91 -61.35 -0.30 -11.16 16 12 C 0.13 2.31 4.56 -4.04 -0.02 2.29 16 13 C -0.07 -1.39 0.54 -154.51 -0.08 -1.47 16 14 C -0.13 -2.27 8.05 37.16 0.30 -1.97 16 15 C -0.13 -2.23 8.05 37.16 0.30 -1.94 16 16 C 0.04 0.89 4.04 -27.88 -0.11 0.77 16 17 C -0.51 -13.55 7.65 -34.44 -0.26 -13.82 16 18 H 0.06 1.52 5.68 -52.48 -0.30 1.22 16 19 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 20 N -0.89 -26.46 13.29 55.43 0.74 -25.73 16 21 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 25 C -0.05 -0.57 9.27 -38.96 -0.36 -0.93 16 26 H 0.11 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.08 0.33 7.74 -51.92 -0.40 -0.08 16 28 H 0.08 0.31 7.74 -51.92 -0.40 -0.09 16 29 H 0.13 0.71 5.84 -52.48 -0.31 0.40 16 30 H 0.14 0.91 8.06 -52.48 -0.42 0.48 16 31 H 0.40 3.31 9.06 45.56 0.41 3.73 16 32 H 0.40 5.19 4.19 -40.82 -0.17 5.01 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 35 H 0.03 0.41 6.86 -51.93 -0.36 0.06 16 36 H 0.07 1.30 6.62 -51.93 -0.34 0.96 16 37 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.07 1.29 6.62 -51.93 -0.34 0.94 16 40 H 0.03 0.40 6.86 -51.93 -0.36 0.05 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 44 H 0.14 1.37 6.40 -52.48 -0.34 1.03 16 LS Contribution 367.83 15.07 5.54 5.54 Total: -1.00 -32.84 367.83 -9.00 -41.84 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -5.42 Total: 4.62 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: -1.39 Total: -11.45 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: 0.44 Total: -36.88 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: -0.73 Total: -16.57 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -0.88 SS G_CDS: -2.42 Total: -3.31 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.84 -9.00 -41.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597660734.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.921 kcal (2) G-P(sol) polarization free energy of solvation -32.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds