Wall clock time and date at job start Tue Mar 31 2020 14:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34673 * 116.99935 * 2 1 4 4 O 1.21418 * 120.00507 * 359.97438 * 3 2 1 5 5 C 1.48062 * 119.99686 * 180.02562 * 3 2 1 6 6 C 1.40062 * 120.89044 * 0.02562 * 5 3 2 7 7 C 1.37947 * 119.17130 * 179.97438 * 6 5 3 8 8 N 1.31913 * 121.00676 * 0.02562 * 7 6 5 9 9 C 1.32318 * 121.96203 * 359.72148 * 8 7 6 10 10 N 1.39012 * 119.64604 * 180.29144 * 9 8 7 11 11 C 1.46504 * 120.00199 * 0.24772 * 10 9 8 12 12 C 1.53004 * 109.47244 * 179.97438 * 11 10 9 13 13 C 1.52998 * 109.47255 * 300.00497 * 12 11 10 14 14 C 1.53008 * 109.46851 * 60.00155 * 12 11 10 15 15 C 1.50692 * 109.47072 * 179.97438 * 12 11 10 16 16 H 1.08007 * 120.00271 * 1.35046 * 15 12 11 17 17 C 1.37880 * 120.00209 * 181.34989 * 15 12 11 18 18 N 1.31514 * 120.00363 * 193.97892 * 17 15 12 19 19 Si 1.86804 * 119.99837 * 13.97620 * 17 15 12 20 20 H 1.48496 * 109.47085 * 84.54664 * 19 17 15 21 21 H 1.48499 * 109.47107 * 204.55338 * 19 17 15 22 22 H 1.48503 * 109.46922 * 324.54834 * 19 17 15 23 23 C 1.39124 * 120.70872 * 0.54108 * 9 8 7 24 24 N 1.48014 * 120.53963 * 179.75004 * 23 9 8 25 25 O 1.21803 * 120.00282 * 269.72776 * 24 23 9 26 26 O 1.21806 * 120.00185 * 89.44075 * 24 23 9 27 27 H 1.09002 * 109.47357 * 300.00710 * 1 2 3 28 28 H 1.08999 * 109.46897 * 60.00120 * 1 2 3 29 29 H 1.08994 * 109.47464 * 180.02562 * 1 2 3 30 30 H 1.07996 * 120.40966 * 0.02562 * 6 5 3 31 31 H 1.07997 * 119.49479 * 179.97438 * 7 6 5 32 32 H 0.97008 * 120.00104 * 180.24669 * 10 9 8 33 33 H 1.08996 * 109.46859 * 299.99628 * 11 10 9 34 34 H 1.08999 * 109.46836 * 59.99943 * 11 10 9 35 35 H 1.08994 * 109.47407 * 69.36500 * 13 12 11 36 36 H 1.09005 * 109.47053 * 189.36817 * 13 12 11 37 37 H 1.09005 * 109.46637 * 309.36367 * 13 12 11 38 38 H 1.08998 * 109.46903 * 59.99636 * 14 12 11 39 39 H 1.08997 * 109.46749 * 179.97438 * 14 12 11 40 40 H 1.08996 * 109.46683 * 299.99973 * 14 12 11 41 41 H 0.96994 * 120.00086 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0633 1.2000 0.0000 4 8 1.4021 2.2183 -0.0005 5 6 3.5419 1.2774 -0.0006 6 6 4.3229 0.1147 -0.0017 7 6 5.6977 0.2281 -0.0027 8 7 6.2819 1.4108 -0.0022 9 6 5.5857 2.5360 -0.0061 10 7 6.2513 3.7564 -0.0115 11 6 7.7159 3.7921 -0.0183 12 6 8.1906 5.2466 -0.0239 13 6 7.6574 5.9523 -1.2723 14 6 7.6689 5.9581 1.2262 15 6 9.6971 5.2832 -0.0303 16 1 10.2596 4.3615 -0.0523 17 6 10.3574 6.4934 -0.0079 18 7 11.6412 6.5473 -0.2880 19 14 9.4284 8.0565 0.4202 20 1 9.3723 8.2105 1.8961 21 1 10.1260 9.2253 -0.1734 22 1 8.0482 7.9762 -0.1219 23 6 4.1947 2.5108 0.0003 24 7 3.4196 3.7718 0.0014 25 8 3.1013 4.2901 1.0567 26 8 3.1046 4.2940 -1.0529 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.8545 -0.8584 -0.0025 31 1 6.3049 -0.6650 -0.0031 32 1 5.7460 4.5845 -0.0108 33 1 8.0956 3.2890 0.8709 34 1 8.0874 3.2855 -0.9090 35 1 6.5775 6.0734 -1.1879 36 1 8.1268 6.9318 -1.3643 37 1 7.8883 5.3545 -2.1541 38 1 8.0487 5.4553 2.1155 39 1 8.0075 6.9941 1.2224 40 1 6.5793 5.9315 1.2312 41 1 12.1058 7.3986 -0.2719 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598629555.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:12 Heat of formation + Delta-G solvation = -16.635944 kcal Electronic energy + Delta-G solvation = -28008.656485 eV Core-core repulsion = 23893.874408 eV Total energy + Delta-G solvation = -4114.782077 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.32603 -41.02412 -40.27929 -37.66777 -37.07280 -36.34996 -34.76680 -33.51817 -31.97381 -30.46080 -28.54598 -26.84699 -26.53349 -26.34049 -25.15412 -24.18718 -23.01389 -21.58843 -19.71651 -19.14484 -18.91463 -18.67752 -17.88346 -17.53195 -16.95688 -16.76788 -16.13636 -16.00472 -15.31147 -15.19153 -15.04506 -14.42631 -14.09564 -13.97535 -13.56660 -13.45231 -13.03494 -12.77737 -12.60243 -12.29295 -12.13273 -11.85122 -11.55754 -11.42103 -11.35914 -11.24879 -10.96962 -10.76596 -10.58840 -10.56975 -10.38453 -10.19955 -10.09834 -10.07949 -9.23996 -8.76978 -8.55239 -8.16225 -6.23008 -4.21587 -0.23470 0.60201 0.62308 1.31883 1.87642 1.96827 2.85313 3.16345 3.21273 3.29745 3.35935 3.84483 3.91704 4.20046 4.29734 4.41816 4.58845 4.64106 4.73334 4.95198 5.07576 5.09180 5.23746 5.53868 5.65570 5.70063 5.86313 5.93793 6.16879 6.28016 6.35071 6.39211 6.47465 6.59106 6.68326 6.84967 6.96499 7.01259 7.07555 7.28902 7.57670 7.67324 7.67412 8.33872 8.79928 9.40608 10.89568 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.024582 B = 0.003399 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.773165 B = 8235.881995 C = 9042.541724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.343 6.343 3 C 0.503 3.497 4 O -0.479 6.479 5 C 0.013 3.987 6 C -0.188 4.188 7 C 0.192 3.808 8 N -0.494 5.494 9 C 0.457 3.543 10 N -0.693 5.693 11 C 0.146 3.854 12 C 0.028 3.972 13 C -0.145 4.145 14 C -0.151 4.151 15 C -0.515 4.515 16 H 0.078 0.922 17 C 0.079 3.921 18 N -0.888 5.888 19 Si 0.882 3.118 20 H -0.284 1.284 21 H -0.303 1.303 22 H -0.249 1.249 23 C -0.122 4.122 24 N 0.035 4.965 25 O -0.134 6.134 26 O -0.133 6.133 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.109 0.891 30 H 0.165 0.835 31 H 0.184 0.816 32 H 0.410 0.590 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.020 0.980 36 H 0.060 0.940 37 H 0.049 0.951 38 H 0.056 0.944 39 H 0.046 0.954 40 H 0.027 0.973 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.222 -16.140 0.571 24.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.259 6.259 3 C 0.345 3.655 4 O -0.365 6.365 5 C 0.003 3.997 6 C -0.212 4.212 7 C 0.029 3.971 8 N -0.213 5.213 9 C 0.216 3.784 10 N -0.319 5.319 11 C 0.025 3.975 12 C 0.026 3.974 13 C -0.203 4.203 14 C -0.208 4.208 15 C -0.553 4.553 16 H 0.096 0.904 17 C -0.124 4.124 18 N -0.524 5.524 19 Si 0.714 3.286 20 H -0.212 1.212 21 H -0.231 1.231 22 H -0.175 1.175 23 C -0.212 4.212 24 N 0.566 4.434 25 O -0.357 6.357 26 O -0.357 6.357 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.127 0.873 30 H 0.182 0.818 31 H 0.201 0.799 32 H 0.248 0.752 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.039 0.961 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.046 0.954 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.724 -16.218 0.545 23.302 hybrid contribution -1.884 1.530 0.317 2.448 sum -18.608 -14.687 0.862 23.721 Atomic orbital electron populations 1.23428 0.74703 1.04356 1.03258 1.86498 1.24450 1.31090 1.83864 1.20895 0.88272 0.82424 0.73921 1.90983 1.66347 1.35791 1.43419 1.18807 0.90429 0.91748 0.98742 1.22155 0.94581 0.98059 1.06367 1.22981 0.92032 0.94892 0.87188 1.67585 1.37945 0.96879 1.18877 1.17860 0.83589 0.88974 0.87991 1.45638 1.09976 1.02920 1.73335 1.21801 0.73690 0.99742 1.02306 1.18772 0.97455 0.89421 0.91711 1.22334 0.97093 1.01694 0.99167 1.22395 0.97596 1.00559 1.00223 1.20609 0.87166 0.94736 1.52808 0.90359 1.24938 0.94739 0.98809 0.93956 1.69931 1.09476 1.26486 1.46501 0.87331 0.80196 0.82577 0.78449 1.21152 1.23147 1.17497 1.21186 0.91196 0.84735 1.24129 1.43007 0.98832 1.01090 1.00502 1.94552 1.56175 1.64263 1.20703 1.94555 1.56292 1.63984 1.20822 0.91317 0.91307 0.87259 0.81764 0.79882 0.75224 0.90950 0.90860 0.96096 0.92081 0.93203 0.92538 0.93609 0.95424 0.92394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.56 101.05 1.07 1.29 16 2 O -0.34 -3.17 9.92 -40.42 -0.40 -3.57 16 3 C 0.50 6.33 7.92 34.76 0.28 6.61 16 4 O -0.48 -7.56 14.52 -24.25 -0.35 -7.92 16 5 C 0.01 0.16 5.90 -104.69 -0.62 -0.46 16 6 C -0.19 -1.60 9.70 -39.00 -0.38 -1.98 16 7 C 0.19 1.69 11.16 -17.62 -0.20 1.49 16 8 N -0.49 -6.59 9.53 -12.49 -0.12 -6.71 16 9 C 0.46 7.02 7.48 -155.08 -1.16 5.86 16 10 N -0.69 -11.77 5.14 -60.44 -0.31 -12.08 16 11 C 0.15 2.73 4.50 -4.04 -0.02 2.71 16 12 C 0.03 0.60 0.50 -155.66 -0.08 0.52 16 13 C -0.15 -3.05 7.53 37.16 0.28 -2.77 16 14 C -0.15 -3.15 7.52 37.16 0.28 -2.87 16 15 C -0.52 -13.43 8.62 -34.44 -0.30 -13.73 16 16 H 0.08 2.20 7.99 -52.48 -0.42 1.78 16 17 C 0.08 2.16 5.32 -17.82 -0.09 2.07 16 18 N -0.89 -26.05 13.96 55.43 0.77 -25.27 16 19 Si 0.88 21.16 22.79 -169.99 -3.87 17.29 16 20 H -0.28 -6.80 7.10 56.52 0.40 -6.39 16 21 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 22 H -0.25 -5.56 4.65 56.52 0.26 -5.30 16 23 C -0.12 -1.86 6.22 -79.13 -0.49 -2.35 16 24 N 0.04 0.62 1.73 34.36 0.06 0.68 16 25 O -0.13 -2.46 19.02 -32.24 -0.61 -3.07 16 26 O -0.13 -2.45 19.03 -32.17 -0.61 -3.06 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.11 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.16 0.84 7.71 -52.49 -0.40 0.43 16 31 H 0.18 0.82 8.06 -52.49 -0.42 0.40 16 32 H 0.41 7.16 5.49 -40.82 -0.22 6.94 16 33 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 35 H 0.02 0.39 7.13 -51.93 -0.37 0.02 16 36 H 0.06 1.36 4.30 -51.93 -0.22 1.13 16 37 H 0.05 1.01 8.12 -51.93 -0.42 0.59 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.05 1.01 2.25 -51.93 -0.12 0.89 16 40 H 0.03 0.51 6.86 -51.93 -0.36 0.15 16 41 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 342.49 15.07 5.16 5.16 Total: -1.00 -32.40 342.49 -6.49 -38.89 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -4.77 Total: 3.26 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: -1.43 Total: -3.60 kcal Atomic # 7 Polarization: -43.78 SS G_CDS: 0.40 Total: -43.38 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: -1.98 Total: -17.62 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -3.87 Total: 17.29 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.40 -6.49 -38.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598629555.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.252 kcal (2) G-P(sol) polarization free energy of solvation -32.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds