Wall clock time and date at job start Tue Mar 31 2020 14:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34673 * 116.99935 * 2 1 4 4 O 1.21418 * 120.00507 * 359.97438 * 3 2 1 5 5 C 1.48062 * 119.99686 * 180.02562 * 3 2 1 6 6 C 1.40062 * 120.89044 * 0.02562 * 5 3 2 7 7 C 1.37947 * 119.17130 * 179.97438 * 6 5 3 8 8 N 1.31913 * 121.00676 * 0.02562 * 7 6 5 9 9 C 1.32318 * 121.96203 * 359.72148 * 8 7 6 10 10 N 1.39012 * 119.64604 * 180.29144 * 9 8 7 11 11 C 1.46504 * 120.00199 * 0.24772 * 10 9 8 12 12 C 1.53004 * 109.47244 * 179.97438 * 11 10 9 13 13 C 1.52998 * 109.47255 * 300.00497 * 12 11 10 14 14 C 1.53008 * 109.46851 * 60.00155 * 12 11 10 15 15 C 1.50692 * 109.47072 * 179.97438 * 12 11 10 16 16 H 1.08007 * 120.00271 * 1.35046 * 15 12 11 17 17 C 1.37880 * 120.00209 * 181.34989 * 15 12 11 18 18 N 1.31514 * 120.00363 * 193.97892 * 17 15 12 19 19 Si 1.86804 * 119.99837 * 13.97620 * 17 15 12 20 20 H 1.48496 * 109.47085 * 84.54664 * 19 17 15 21 21 H 1.48499 * 109.47107 * 204.55338 * 19 17 15 22 22 H 1.48503 * 109.46922 * 324.54834 * 19 17 15 23 23 C 1.39124 * 120.70872 * 0.54108 * 9 8 7 24 24 N 1.48014 * 120.53963 * 179.75004 * 23 9 8 25 25 O 1.21803 * 120.00282 * 269.72776 * 24 23 9 26 26 O 1.21806 * 120.00185 * 89.44075 * 24 23 9 27 27 H 1.09002 * 109.47357 * 300.00710 * 1 2 3 28 28 H 1.08999 * 109.46897 * 60.00120 * 1 2 3 29 29 H 1.08994 * 109.47464 * 180.02562 * 1 2 3 30 30 H 1.07996 * 120.40966 * 0.02562 * 6 5 3 31 31 H 1.07997 * 119.49479 * 179.97438 * 7 6 5 32 32 H 0.97008 * 120.00104 * 180.24669 * 10 9 8 33 33 H 1.08996 * 109.46859 * 299.99628 * 11 10 9 34 34 H 1.08999 * 109.46836 * 59.99943 * 11 10 9 35 35 H 1.08994 * 109.47407 * 69.36500 * 13 12 11 36 36 H 1.09005 * 109.47053 * 189.36817 * 13 12 11 37 37 H 1.09005 * 109.46637 * 309.36367 * 13 12 11 38 38 H 1.08998 * 109.46903 * 59.99636 * 14 12 11 39 39 H 1.08997 * 109.46749 * 179.97438 * 14 12 11 40 40 H 1.08996 * 109.46683 * 299.99973 * 14 12 11 41 41 H 0.96994 * 120.00086 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0633 1.2000 0.0000 4 8 1.4021 2.2183 -0.0005 5 6 3.5419 1.2774 -0.0006 6 6 4.3229 0.1147 -0.0017 7 6 5.6977 0.2281 -0.0027 8 7 6.2819 1.4108 -0.0022 9 6 5.5857 2.5360 -0.0061 10 7 6.2513 3.7564 -0.0115 11 6 7.7159 3.7921 -0.0183 12 6 8.1906 5.2466 -0.0239 13 6 7.6574 5.9523 -1.2723 14 6 7.6689 5.9581 1.2262 15 6 9.6971 5.2832 -0.0303 16 1 10.2596 4.3615 -0.0523 17 6 10.3574 6.4934 -0.0079 18 7 11.6412 6.5473 -0.2880 19 14 9.4284 8.0565 0.4202 20 1 9.3723 8.2105 1.8961 21 1 10.1260 9.2253 -0.1734 22 1 8.0482 7.9762 -0.1219 23 6 4.1947 2.5108 0.0003 24 7 3.4196 3.7718 0.0014 25 8 3.1013 4.2901 1.0567 26 8 3.1046 4.2940 -1.0529 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.8545 -0.8584 -0.0025 31 1 6.3049 -0.6650 -0.0031 32 1 5.7460 4.5845 -0.0108 33 1 8.0956 3.2890 0.8709 34 1 8.0874 3.2855 -0.9090 35 1 6.5775 6.0734 -1.1879 36 1 8.1268 6.9318 -1.3643 37 1 7.8883 5.3545 -2.1541 38 1 8.0487 5.4553 2.1155 39 1 8.0075 6.9941 1.2224 40 1 6.5793 5.9315 1.2312 41 1 12.1058 7.3986 -0.2719 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598629555.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:11 Heat of formation + Delta-G solvation = -37.425292 kcal Electronic energy + Delta-G solvation = -28009.557978 eV Core-core repulsion = 23893.874408 eV Total energy + Delta-G solvation = -4115.683571 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.50704 -42.00941 -41.26051 -39.16190 -37.93792 -37.66749 -36.15201 -34.51483 -33.88624 -31.67283 -29.23365 -28.18810 -27.90673 -27.73022 -26.98000 -25.38989 -24.06212 -22.57972 -21.15035 -20.49128 -19.97449 -19.94334 -18.96768 -18.58886 -18.15439 -17.78070 -17.77373 -17.15820 -16.89723 -16.34264 -15.93849 -15.66118 -15.19757 -15.01006 -14.86980 -14.61229 -14.54979 -14.26379 -14.04716 -13.88882 -13.34725 -13.19108 -12.90380 -12.51914 -12.45627 -12.34855 -12.34600 -12.21484 -12.13403 -12.06011 -11.95864 -11.72473 -11.52470 -11.20457 -11.03666 -10.66584 -10.50990 -9.30817 -8.35081 -6.35560 -1.17131 -0.71912 -0.31398 0.17782 1.04144 1.04829 1.30539 1.35056 1.43787 1.71534 2.26186 2.28901 2.98346 3.00800 3.03875 3.17959 3.48225 3.80813 3.91944 4.14908 4.18458 4.23174 4.23842 4.28047 4.56364 4.58483 4.64165 4.67729 4.73001 4.81421 4.88747 4.93298 4.95174 5.03004 5.14008 5.35757 5.51304 5.60476 5.71129 5.76642 6.14719 6.24497 6.30818 6.57607 6.69328 7.29567 8.81061 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.024582 B = 0.003399 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.773165 B = 8235.881995 C = 9042.541724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.330 6.330 3 C 0.505 3.495 4 O -0.521 6.521 5 C -0.007 4.007 6 C -0.143 4.143 7 C 0.204 3.796 8 N -0.512 5.512 9 C 0.446 3.554 10 N -0.706 5.706 11 C 0.168 3.832 12 C 0.025 3.975 13 C -0.142 4.142 14 C -0.149 4.149 15 C -0.510 4.510 16 H 0.046 0.954 17 C 0.028 3.972 18 N -0.937 5.937 19 Si 0.933 3.067 20 H -0.281 1.281 21 H -0.312 1.312 22 H -0.222 1.222 23 C -0.145 4.145 24 N 0.041 4.959 25 O -0.155 6.155 26 O -0.157 6.157 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.150 0.850 30 H 0.212 0.788 31 H 0.238 0.762 32 H 0.405 0.595 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.041 0.959 36 H 0.047 0.953 37 H 0.049 0.951 38 H 0.056 0.944 39 H 0.036 0.964 40 H 0.050 0.950 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.252 -19.216 0.823 27.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.244 6.244 3 C 0.349 3.651 4 O -0.411 6.411 5 C -0.017 4.017 6 C -0.165 4.165 7 C 0.042 3.958 8 N -0.231 5.231 9 C 0.207 3.793 10 N -0.334 5.334 11 C 0.046 3.954 12 C 0.023 3.977 13 C -0.200 4.200 14 C -0.206 4.206 15 C -0.548 4.548 16 H 0.064 0.936 17 C -0.171 4.171 18 N -0.576 5.576 19 Si 0.763 3.237 20 H -0.209 1.209 21 H -0.241 1.241 22 H -0.146 1.146 23 C -0.236 4.236 24 N 0.568 4.432 25 O -0.377 6.377 26 O -0.378 6.378 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.168 0.832 30 H 0.229 0.771 31 H 0.254 0.746 32 H 0.242 0.758 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.054 0.946 40 H 0.068 0.932 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.809 -19.349 0.796 26.996 hybrid contribution -1.298 2.110 0.228 2.488 sum -20.107 -17.239 1.025 26.505 Atomic orbital electron populations 1.23784 0.72944 1.06866 1.02882 1.86493 1.26030 1.28986 1.82941 1.21022 0.88384 0.82770 0.72952 1.90971 1.67184 1.37329 1.45608 1.19091 0.90858 0.91838 0.99949 1.22785 0.94149 0.98452 1.01103 1.23982 0.92851 0.94825 0.84168 1.67681 1.38572 0.97652 1.19158 1.17877 0.83515 0.89024 0.88845 1.45318 1.08743 1.03657 1.75641 1.21289 0.75151 0.97347 1.01658 1.18710 0.94572 0.91802 0.92571 1.22245 0.98285 1.00731 0.98729 1.22322 0.99073 0.99570 0.99618 1.20879 0.89711 0.93260 1.50922 0.93621 1.25648 0.95307 1.01958 0.94175 1.70057 1.11320 1.27195 1.49026 0.86501 0.80361 0.78613 0.78228 1.20883 1.24109 1.14643 1.21273 0.90963 0.84196 1.27145 1.43328 0.98338 1.01681 0.99878 1.94519 1.57006 1.65252 1.20910 1.94525 1.57206 1.65013 1.21041 0.91763 0.91766 0.83193 0.77094 0.74615 0.75823 0.91508 0.91688 0.93976 0.93383 0.93182 0.92478 0.94597 0.93160 0.92527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 113.37 1.20 1.47 16 2 O -0.33 -4.98 9.92 -55.82 -0.55 -5.53 16 3 C 0.51 11.77 7.92 70.43 0.56 12.33 16 4 O -0.52 -16.37 14.52 24.93 0.36 -16.01 16 5 C -0.01 -0.16 5.90 -19.91 -0.12 -0.28 16 6 C -0.14 -1.67 9.70 22.64 0.22 -1.45 16 7 C 0.20 2.55 11.16 84.61 0.94 3.49 16 8 N -0.51 -12.21 9.53 -193.42 -1.84 -14.05 16 9 C 0.45 13.10 7.48 133.08 1.00 14.09 16 10 N -0.71 -23.53 5.14 -345.13 -1.78 -25.31 16 11 C 0.17 6.23 4.50 86.38 0.39 6.62 16 12 C 0.02 1.06 0.50 -52.93 -0.03 1.03 16 13 C -0.14 -5.86 7.53 71.98 0.54 -5.32 16 14 C -0.15 -6.05 7.52 71.98 0.54 -5.51 16 15 C -0.51 -27.11 8.62 25.60 0.22 -26.89 16 16 H 0.05 2.67 7.99 -2.91 -0.02 2.64 16 17 C 0.03 1.55 5.32 84.66 0.45 2.00 16 18 N -0.94 -56.77 13.96 21.45 0.30 -56.47 16 19 Si 0.93 43.90 22.79 68.60 1.56 45.46 16 20 H -0.28 -13.04 7.10 99.48 0.71 -12.33 16 21 H -0.31 -15.03 7.11 99.48 0.71 -14.32 16 22 H -0.22 -9.43 4.65 99.48 0.46 -8.97 16 23 C -0.15 -4.28 6.22 36.91 0.23 -4.05 16 24 N 0.04 1.44 1.73 -45.21 -0.08 1.36 16 25 O -0.16 -5.81 19.02 21.54 0.41 -5.40 16 26 O -0.16 -5.88 19.03 21.46 0.41 -5.48 16 27 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.15 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.21 0.56 7.71 -2.91 -0.02 0.54 16 31 H 0.24 0.42 8.06 -2.91 -0.02 0.40 16 32 H 0.40 13.97 5.49 -92.70 -0.51 13.46 16 33 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 34 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 35 H 0.04 1.54 7.13 -2.39 -0.02 1.52 16 36 H 0.05 2.08 4.30 -2.38 -0.01 2.07 16 37 H 0.05 2.01 8.12 -2.38 -0.02 1.99 16 38 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.04 1.53 2.25 -2.39 -0.01 1.52 16 40 H 0.05 1.80 6.86 -2.39 -0.02 1.79 16 41 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -75.51 342.49 5.28 -70.23 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 0.34 Total: 13.66 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: 6.14 Total: -2.47 kcal Atomic # 7 Polarization: -91.07 SS G_CDS: -3.40 Total: -94.47 kcal Atomic # 8 Polarization: -33.04 SS G_CDS: 0.63 Total: -32.42 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 1.56 Total: 45.46 kcal Total: -75.51 5.28 -70.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598629555.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.806 kcal (2) G-P(sol) polarization free energy of solvation -75.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds