Wall clock time and date at job start Tue Mar 31 2020 14:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47159 * 2 1 4 4 C 1.53009 * 109.47298 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46910 * 179.97438 * 4 3 2 6 6 C 1.46499 * 119.99848 * 275.78730 * 5 4 3 7 7 C 1.52997 * 117.50313 * 8.75322 * 6 5 4 8 8 C 1.52998 * 117.50220 * 300.08727 * 6 5 4 9 9 S 1.65597 * 119.99714 * 95.78959 * 5 4 3 10 10 O 1.42100 * 106.40360 * 343.50359 * 9 5 4 11 11 O 1.42097 * 106.40205 * 210.57870 * 9 5 4 12 12 C 1.76201 * 107.21710 * 97.04516 * 9 5 4 13 13 C 1.37640 * 120.13045 * 112.43869 * 12 9 5 14 14 C 1.38616 * 120.24996 * 179.97438 * 13 12 9 15 15 C 1.38651 * 120.49836 * 0.02562 * 14 13 12 16 16 C 1.37597 * 120.25533 * 359.97438 * 15 14 13 17 17 C 1.40700 * 120.12892 * 292.69451 * 12 9 5 18 18 C 1.41399 * 120.24351 * 0.02562 * 17 12 9 19 19 H 1.08007 * 120.00140 * 320.90942 * 18 17 12 20 20 C 1.39946 * 120.00161 * 140.90901 * 18 17 12 21 21 N 1.30818 * 120.00077 * 357.18604 * 20 18 17 22 22 Si 1.86801 * 119.99672 * 177.18489 * 20 18 17 23 23 H 1.48497 * 109.47126 * 90.00583 * 22 20 18 24 24 H 1.48502 * 109.47002 * 209.99896 * 22 20 18 25 25 H 1.48493 * 109.47651 * 330.00287 * 22 20 18 26 26 H 1.08995 * 109.47103 * 60.00529 * 1 2 3 27 27 H 1.09003 * 109.46504 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47144 * 299.99758 * 1 2 3 29 29 H 1.08994 * 109.47341 * 239.99936 * 2 1 3 30 30 H 1.09000 * 109.47250 * 119.99933 * 2 1 3 31 31 H 1.09002 * 109.46895 * 60.00090 * 3 2 1 32 32 H 1.09000 * 109.47387 * 299.99737 * 3 2 1 33 33 H 1.09002 * 109.46775 * 60.00383 * 4 3 2 34 34 H 1.08995 * 109.46839 * 299.99887 * 4 3 2 35 35 H 1.09000 * 115.54452 * 154.41981 * 6 5 4 36 36 H 1.08999 * 117.49905 * 359.97438 * 7 6 5 37 37 H 1.08997 * 117.50237 * 145.01981 * 7 6 5 38 38 H 1.09001 * 117.49976 * 214.97941 * 8 6 5 39 39 H 1.08996 * 117.49483 * 359.97438 * 8 6 5 40 40 H 1.08004 * 119.87307 * 359.97438 * 13 12 9 41 41 H 1.07993 * 119.74754 * 180.02562 * 14 13 12 42 42 H 1.08006 * 119.87249 * 180.02562 * 15 14 13 43 43 H 1.07999 * 120.13398 * 179.97438 * 16 15 14 44 44 H 0.96996 * 120.00305 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.1824 3.5562 -1.2626 7 6 3.5978 2.9050 -2.5176 8 6 5.1151 2.9758 -2.3275 9 16 4.4701 3.5570 1.4266 10 8 3.8913 2.7742 2.4618 11 8 4.2025 4.9423 1.2576 12 6 6.2164 3.4059 1.6056 13 6 7.0168 4.5238 1.5413 14 6 8.3909 4.4079 1.6823 15 6 8.9749 3.1675 1.8889 16 6 8.1944 2.0364 1.9568 17 6 6.7987 2.1414 1.8096 18 6 5.9871 0.9852 1.8715 19 1 5.0323 1.0220 2.3751 20 6 6.4208 -0.2067 1.2803 21 7 7.5515 -0.2372 0.6230 22 14 5.3852 -1.7542 1.4298 23 1 4.4350 -1.8258 0.2909 24 1 6.2708 -2.9461 1.4111 25 1 4.6267 -1.7210 2.7059 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9337 0.9286 -0.8892 34 1 3.9330 0.9288 0.8908 35 1 4.1218 4.6417 -1.1842 36 1 3.1214 1.9312 -2.4039 37 1 3.1532 3.5619 -3.2651 38 1 5.6679 3.6794 -2.9499 39 1 5.6368 2.0492 -2.0884 40 1 6.5725 5.4950 1.3802 41 1 9.0112 5.2905 1.6308 42 1 10.0466 3.0889 1.9979 43 1 8.6514 1.0711 2.1174 44 1 7.8523 -1.0635 0.2136 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601302587.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:49 Heat of formation + Delta-G solvation = -42.821969 kcal Electronic energy + Delta-G solvation = -27174.443810 eV Core-core repulsion = 23604.819437 eV Total energy + Delta-G solvation = -3569.624374 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -38.10538 -37.61495 -36.43603 -35.04947 -34.82208 -33.83814 -32.33204 -30.22721 -29.61348 -28.28742 -25.55219 -23.48716 -22.14917 -21.70915 -21.19836 -20.99726 -20.55906 -18.12933 -17.66676 -17.33510 -15.97686 -15.79464 -15.44805 -14.92710 -14.65451 -14.38269 -14.12422 -13.73986 -13.33772 -13.21425 -12.88086 -12.73580 -12.59938 -12.29513 -12.04137 -11.59191 -11.57740 -11.32769 -11.28710 -11.26082 -11.18905 -11.18637 -11.15009 -10.77261 -10.74224 -10.60972 -10.52128 -10.43699 -10.20899 -9.91815 -9.83451 -9.48063 -9.19692 -8.20162 -8.00018 -7.51361 -6.98907 -4.79227 1.45954 2.30040 2.69499 2.95000 3.01600 3.03547 3.74893 3.77845 4.16890 4.40977 4.70814 5.01283 5.12038 5.18700 5.22303 5.27673 5.31120 5.35375 5.50080 5.57902 5.74265 5.87823 5.93702 5.95686 5.99697 6.01287 6.12544 6.19501 6.21880 6.25867 6.34702 6.39616 6.43700 6.54022 6.70140 6.77736 6.82509 6.95992 7.03007 7.27483 7.32069 7.47796 7.69123 7.76259 7.92998 8.34536 8.55333 8.62326 9.97203 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.010735 B = 0.007663 C = 0.005703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2607.645780 B = 3653.277152 C = 4908.726518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C -0.142 4.142 4 C 0.116 3.884 5 N -0.960 5.960 6 C 0.090 3.910 7 C -0.186 4.186 8 C -0.192 4.192 9 S 2.707 3.293 10 O -0.968 6.968 11 O -0.996 6.996 12 C -0.763 4.763 13 C -0.008 4.008 14 C -0.239 4.239 15 C -0.078 4.078 16 C -0.149 4.149 17 C 0.201 3.799 18 C -0.494 4.494 19 H 0.117 0.883 20 C 0.084 3.916 21 N -0.791 5.791 22 Si 0.894 3.106 23 H -0.258 1.258 24 H -0.274 1.274 25 H -0.252 1.252 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.109 0.891 35 H 0.134 0.866 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.108 0.892 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.119 0.881 44 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.159 -0.422 -5.591 8.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.181 4.181 4 C -0.009 4.009 5 N -0.792 5.792 6 C -0.018 4.018 7 C -0.225 4.225 8 C -0.232 4.232 9 S 2.806 3.194 10 O -0.959 6.959 11 O -0.987 6.987 12 C -0.857 4.857 13 C -0.028 4.028 14 C -0.259 4.259 15 C -0.096 4.096 16 C -0.169 4.169 17 C 0.197 3.803 18 C -0.523 4.523 19 H 0.134 0.866 20 C -0.135 4.135 21 N -0.415 5.415 22 Si 0.717 3.283 23 H -0.182 1.182 24 H -0.199 1.199 25 H -0.175 1.175 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.127 0.873 35 H 0.151 0.849 36 H 0.118 0.882 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.120 0.880 40 H 0.126 0.874 41 H 0.114 0.886 42 H 0.113 0.887 43 H 0.137 0.863 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.636 -0.183 -5.129 8.389 hybrid contribution 0.688 -1.018 -0.386 1.288 sum -5.948 -1.201 -5.515 8.200 Atomic orbital electron populations 1.21754 0.96038 1.01168 1.01702 1.21480 0.95629 0.96994 1.02243 1.22160 0.96721 0.96720 1.02545 1.21593 0.92496 0.81879 1.04950 1.57013 1.78961 1.22816 1.20404 1.21348 1.04309 0.95462 0.80648 1.23301 0.96956 1.02924 0.99348 1.23379 0.92404 1.04334 1.03041 1.00983 0.74769 0.71699 0.71946 1.93476 1.77888 1.70707 1.53808 1.93426 1.85902 1.33058 1.86284 1.30083 1.23049 1.00941 1.31669 1.20277 0.93684 0.95789 0.93015 1.20549 0.94344 0.96536 1.14496 1.20945 0.97829 0.93483 0.97387 1.21482 0.94379 0.97124 1.03887 1.17028 0.92356 0.89420 0.81485 1.20383 1.06360 0.93750 1.31800 0.86551 1.25879 0.94845 1.00009 0.92813 1.69753 1.18648 1.29157 1.23976 0.86507 0.80715 0.80038 0.81064 1.18244 1.19902 1.17497 0.92973 0.93075 0.92677 0.92133 0.91676 0.91483 0.91706 0.91291 0.87346 0.84871 0.88221 0.88674 0.88697 0.87963 0.87365 0.88562 0.88714 0.86289 0.90486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.91 37.16 0.37 -1.33 16 2 C -0.13 -1.70 5.93 -26.73 -0.16 -1.86 16 3 C -0.14 -2.18 5.29 -26.73 -0.14 -2.32 16 4 C 0.12 2.08 4.21 -4.04 -0.02 2.06 16 5 N -0.96 -18.19 3.12 -107.30 -0.34 -18.52 16 6 C 0.09 1.47 6.41 -67.93 -0.44 1.04 16 7 C -0.19 -2.47 9.22 -26.69 -0.25 -2.72 16 8 C -0.19 -2.92 10.12 -26.69 -0.27 -3.19 16 9 S 2.71 59.96 5.11 -107.50 -0.55 59.41 16 10 O -0.97 -23.18 14.48 -57.17 -0.83 -24.00 16 11 O -1.00 -22.75 15.92 -57.17 -0.91 -23.66 16 12 C -0.76 -18.19 5.97 -38.87 -0.23 -18.43 16 13 C -0.01 -0.18 9.54 -39.66 -0.38 -0.55 16 14 C -0.24 -5.16 10.05 -39.29 -0.39 -5.56 16 15 C -0.08 -1.72 10.02 -39.66 -0.40 -2.11 16 16 C -0.15 -3.63 8.61 -38.87 -0.33 -3.97 16 17 C 0.20 5.05 5.44 -106.82 -0.58 4.47 16 18 C -0.49 -12.04 6.04 -37.74 -0.23 -12.26 16 19 H 0.12 2.89 4.64 -52.48 -0.24 2.65 16 20 C 0.08 1.92 5.30 -17.34 -0.09 1.83 16 21 N -0.79 -18.53 11.21 55.55 0.62 -17.90 16 22 Si 0.89 17.28 28.76 -169.99 -4.89 12.39 16 23 H -0.26 -4.66 7.11 56.52 0.40 -4.26 16 24 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 25 H -0.25 -4.93 7.11 56.52 0.40 -4.52 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.06 0.89 6.85 -51.93 -0.36 0.53 16 33 H 0.07 1.17 6.60 -51.93 -0.34 0.82 16 34 H 0.11 2.18 3.54 -51.93 -0.18 1.99 16 35 H 0.13 2.12 7.47 -51.93 -0.39 1.73 16 36 H 0.10 1.30 5.70 -51.93 -0.30 1.01 16 37 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.10 1.76 8.04 -51.93 -0.42 1.35 16 40 H 0.11 2.26 7.32 -52.48 -0.38 1.88 16 41 H 0.10 1.80 8.06 -52.49 -0.42 1.37 16 42 H 0.09 1.82 8.06 -52.48 -0.42 1.40 16 43 H 0.12 2.93 6.78 -52.49 -0.36 2.58 16 44 H 0.28 6.10 8.30 -40.82 -0.34 5.76 16 LS Contribution 358.50 15.07 5.40 5.40 Total: -1.00 -27.52 358.50 -11.36 -38.88 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: -6.33 Total: 12.90 kcal Atomic # 6 Polarization: -41.36 SS G_CDS: -3.54 Total: -44.90 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: 0.29 Total: -36.42 kcal Atomic # 8 Polarization: -45.93 SS G_CDS: -1.74 Total: -47.67 kcal Atomic # 14 Polarization: 17.28 SS G_CDS: -4.89 Total: 12.39 kcal Atomic # 16 Polarization: 59.96 SS G_CDS: -0.55 Total: 59.41 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -27.52 -11.36 -38.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601302587.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.944 kcal (2) G-P(sol) polarization free energy of solvation -27.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds