Wall clock time and date at job start Tue Mar 31 2020 14:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47159 * 2 1 4 4 C 1.53009 * 109.47298 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46910 * 179.97438 * 4 3 2 6 6 C 1.46499 * 119.99848 * 275.78730 * 5 4 3 7 7 C 1.52997 * 117.50313 * 8.75322 * 6 5 4 8 8 C 1.52998 * 117.50220 * 300.08727 * 6 5 4 9 9 S 1.65597 * 119.99714 * 95.78959 * 5 4 3 10 10 O 1.42100 * 106.40360 * 343.50359 * 9 5 4 11 11 O 1.42097 * 106.40205 * 210.57870 * 9 5 4 12 12 C 1.76201 * 107.21710 * 97.04516 * 9 5 4 13 13 C 1.37640 * 120.13045 * 112.43869 * 12 9 5 14 14 C 1.38616 * 120.24996 * 179.97438 * 13 12 9 15 15 C 1.38651 * 120.49836 * 0.02562 * 14 13 12 16 16 C 1.37597 * 120.25533 * 359.97438 * 15 14 13 17 17 C 1.40700 * 120.12892 * 292.69451 * 12 9 5 18 18 C 1.41399 * 120.24351 * 0.02562 * 17 12 9 19 19 H 1.08007 * 120.00140 * 320.90942 * 18 17 12 20 20 C 1.39946 * 120.00161 * 140.90901 * 18 17 12 21 21 N 1.30818 * 120.00077 * 357.18604 * 20 18 17 22 22 Si 1.86801 * 119.99672 * 177.18489 * 20 18 17 23 23 H 1.48497 * 109.47126 * 90.00583 * 22 20 18 24 24 H 1.48502 * 109.47002 * 209.99896 * 22 20 18 25 25 H 1.48493 * 109.47651 * 330.00287 * 22 20 18 26 26 H 1.08995 * 109.47103 * 60.00529 * 1 2 3 27 27 H 1.09003 * 109.46504 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47144 * 299.99758 * 1 2 3 29 29 H 1.08994 * 109.47341 * 239.99936 * 2 1 3 30 30 H 1.09000 * 109.47250 * 119.99933 * 2 1 3 31 31 H 1.09002 * 109.46895 * 60.00090 * 3 2 1 32 32 H 1.09000 * 109.47387 * 299.99737 * 3 2 1 33 33 H 1.09002 * 109.46775 * 60.00383 * 4 3 2 34 34 H 1.08995 * 109.46839 * 299.99887 * 4 3 2 35 35 H 1.09000 * 115.54452 * 154.41981 * 6 5 4 36 36 H 1.08999 * 117.49905 * 359.97438 * 7 6 5 37 37 H 1.08997 * 117.50237 * 145.01981 * 7 6 5 38 38 H 1.09001 * 117.49976 * 214.97941 * 8 6 5 39 39 H 1.08996 * 117.49483 * 359.97438 * 8 6 5 40 40 H 1.08004 * 119.87307 * 359.97438 * 13 12 9 41 41 H 1.07993 * 119.74754 * 180.02562 * 14 13 12 42 42 H 1.08006 * 119.87249 * 180.02562 * 15 14 13 43 43 H 1.07999 * 120.13398 * 179.97438 * 16 15 14 44 44 H 0.96996 * 120.00305 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.1824 3.5562 -1.2626 7 6 3.5978 2.9050 -2.5176 8 6 5.1151 2.9758 -2.3275 9 16 4.4701 3.5570 1.4266 10 8 3.8913 2.7742 2.4618 11 8 4.2025 4.9423 1.2576 12 6 6.2164 3.4059 1.6056 13 6 7.0168 4.5238 1.5413 14 6 8.3909 4.4079 1.6823 15 6 8.9749 3.1675 1.8889 16 6 8.1944 2.0364 1.9568 17 6 6.7987 2.1414 1.8096 18 6 5.9871 0.9852 1.8715 19 1 5.0323 1.0220 2.3751 20 6 6.4208 -0.2067 1.2803 21 7 7.5515 -0.2372 0.6230 22 14 5.3852 -1.7542 1.4298 23 1 4.4350 -1.8258 0.2909 24 1 6.2708 -2.9461 1.4111 25 1 4.6267 -1.7210 2.7059 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9337 0.9286 -0.8892 34 1 3.9330 0.9288 0.8908 35 1 4.1218 4.6417 -1.1842 36 1 3.1214 1.9312 -2.4039 37 1 3.1532 3.5619 -3.2651 38 1 5.6679 3.6794 -2.9499 39 1 5.6368 2.0492 -2.0884 40 1 6.5725 5.4950 1.3802 41 1 9.0112 5.2905 1.6308 42 1 10.0466 3.0889 1.9979 43 1 8.6514 1.0711 2.1174 44 1 7.8523 -1.0635 0.2136 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601302587.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:48 Heat of formation + Delta-G solvation = -57.108952 kcal Electronic energy + Delta-G solvation = -27175.063340 eV Core-core repulsion = 23604.819437 eV Total energy + Delta-G solvation = -3570.243904 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.48268 -39.30268 -38.20194 -36.72589 -36.13048 -35.58948 -33.61645 -32.00244 -31.40153 -29.49536 -27.33224 -24.69471 -23.57136 -23.17096 -22.96264 -22.24298 -21.85948 -19.72063 -19.37579 -18.97959 -17.72373 -17.27282 -17.14309 -16.23879 -16.09022 -15.94557 -15.52489 -15.12217 -15.01702 -14.80131 -14.43978 -14.11438 -13.88435 -13.80179 -13.43869 -13.21437 -13.01648 -13.00157 -12.95411 -12.92335 -12.86121 -12.55693 -12.38451 -12.28146 -12.19696 -11.92437 -11.81580 -11.71570 -11.60268 -11.42455 -11.22701 -11.11308 -10.95824 -9.87433 -9.50479 -9.32336 -8.72568 -6.61742 -0.22853 0.50658 0.95626 1.35672 1.42812 1.47526 2.15794 2.18767 2.65401 2.91308 3.03247 3.42604 3.62137 3.91543 3.99432 4.05644 4.13303 4.16138 4.22877 4.29393 4.33335 4.47675 4.58354 4.68272 4.77040 4.81955 4.83579 4.96468 4.98187 4.99882 5.04872 5.16264 5.19574 5.27871 5.31581 5.34647 5.35704 5.47129 5.51694 5.53507 5.66782 5.85257 5.92187 5.96420 6.14172 6.51743 6.76148 6.81561 8.25726 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.010735 B = 0.007663 C = 0.005703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2607.645780 B = 3653.277152 C = 4908.726518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.127 4.127 3 C -0.137 4.137 4 C 0.112 3.888 5 N -0.956 5.956 6 C 0.058 3.942 7 C -0.152 4.152 8 C -0.197 4.197 9 S 2.718 3.282 10 O -0.994 6.994 11 O -1.007 7.007 12 C -0.782 4.782 13 C -0.022 4.022 14 C -0.239 4.239 15 C -0.076 4.076 16 C -0.176 4.176 17 C 0.175 3.825 18 C -0.510 4.510 19 H 0.104 0.896 20 C 0.058 3.942 21 N -0.814 5.814 22 Si 0.939 3.061 23 H -0.235 1.235 24 H -0.265 1.265 25 H -0.260 1.260 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.049 0.951 29 H 0.072 0.928 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.136 0.864 36 H 0.105 0.895 37 H 0.128 0.872 38 H 0.112 0.888 39 H 0.076 0.924 40 H 0.122 0.878 41 H 0.130 0.870 42 H 0.124 0.876 43 H 0.107 0.893 44 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.090 -0.526 -7.548 10.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.165 4.165 3 C -0.176 4.176 4 C -0.013 4.013 5 N -0.790 5.790 6 C -0.049 4.049 7 C -0.191 4.191 8 C -0.236 4.236 9 S 2.817 3.183 10 O -0.984 6.984 11 O -0.997 6.997 12 C -0.875 4.875 13 C -0.042 4.042 14 C -0.259 4.259 15 C -0.095 4.095 16 C -0.196 4.196 17 C 0.171 3.829 18 C -0.539 4.539 19 H 0.122 0.878 20 C -0.159 4.159 21 N -0.439 5.439 22 Si 0.759 3.241 23 H -0.158 1.158 24 H -0.190 1.190 25 H -0.184 1.184 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.068 0.932 29 H 0.091 0.909 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.154 0.846 36 H 0.123 0.877 37 H 0.146 0.854 38 H 0.130 0.870 39 H 0.095 0.905 40 H 0.140 0.860 41 H 0.148 0.852 42 H 0.142 0.858 43 H 0.125 0.875 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.545 -0.272 -7.086 10.354 hybrid contribution 1.039 -0.909 0.199 1.395 sum -6.506 -1.182 -6.887 9.547 Atomic orbital electron populations 1.21731 0.94158 1.02279 1.02165 1.21518 0.97305 0.95554 1.02169 1.22128 0.94596 0.98173 1.02720 1.21666 0.94304 0.81168 1.04158 1.56742 1.78605 1.23276 1.20404 1.21649 1.07104 0.95712 0.80411 1.23429 0.95257 1.03206 0.97160 1.23348 0.93896 1.03484 1.02912 1.00501 0.74081 0.71378 0.72387 1.93432 1.78144 1.71164 1.55705 1.93396 1.85859 1.33770 1.86718 1.30429 1.24315 1.01039 1.31755 1.20605 0.94454 0.96081 0.93014 1.20955 0.94368 0.97554 1.12991 1.21287 0.99274 0.92991 0.95939 1.21513 0.94642 0.97550 1.05872 1.17321 0.93007 0.90222 0.82322 1.20366 1.06068 0.94688 1.32766 0.87818 1.26453 0.95647 1.01863 0.91970 1.69786 1.19632 1.30160 1.24280 0.85832 0.79883 0.77021 0.81379 1.15824 1.18972 1.18414 0.91607 0.91676 0.93153 0.90912 0.93083 0.93111 0.89649 0.90402 0.89777 0.84617 0.87697 0.85380 0.86992 0.90510 0.86006 0.85164 0.85759 0.87495 0.89767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 9.91 71.98 0.71 -2.25 16 2 C -0.13 -3.23 5.93 30.59 0.18 -3.05 16 3 C -0.14 -4.03 5.29 30.60 0.16 -3.87 16 4 C 0.11 3.98 4.21 86.38 0.36 4.34 16 5 N -0.96 -36.20 3.12 -493.39 -1.54 -37.74 16 6 C 0.06 1.83 6.41 44.99 0.29 2.12 16 7 C -0.15 -3.56 9.22 30.62 0.28 -3.28 16 8 C -0.20 -5.70 10.12 30.62 0.31 -5.39 16 9 S 2.72 122.96 5.11 -56.49 -0.29 122.68 16 10 O -0.99 -49.39 14.48 -128.00 -1.85 -51.25 16 11 O -1.01 -46.34 15.92 -128.00 -2.04 -48.38 16 12 C -0.78 -38.12 5.97 22.73 0.14 -37.98 16 13 C -0.02 -0.99 9.54 22.22 0.21 -0.77 16 14 C -0.24 -10.02 10.05 22.46 0.23 -9.80 16 15 C -0.08 -3.33 10.02 22.22 0.22 -3.11 16 16 C -0.18 -8.77 8.61 22.73 0.20 -8.58 16 17 C 0.18 9.07 5.44 -21.29 -0.12 8.95 16 18 C -0.51 -25.74 6.04 23.46 0.14 -25.60 16 19 H 0.10 5.41 4.64 -2.91 -0.01 5.40 16 20 C 0.06 2.71 5.30 85.26 0.45 3.16 16 21 N -0.81 -38.78 11.21 21.83 0.24 -38.53 16 22 Si 0.94 35.34 28.76 68.60 1.97 37.32 16 23 H -0.24 -7.90 7.11 99.48 0.71 -7.20 16 24 H -0.27 -9.54 7.11 99.48 0.71 -8.83 16 25 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 26 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.05 1.42 8.14 -2.39 -0.02 1.41 16 31 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.08 2.12 6.85 -2.39 -0.02 2.11 16 33 H 0.08 2.57 6.60 -2.39 -0.02 2.56 16 34 H 0.08 3.46 3.54 -2.39 -0.01 3.45 16 35 H 0.14 4.17 7.47 -2.39 -0.02 4.15 16 36 H 0.10 2.38 5.70 -2.39 -0.01 2.37 16 37 H 0.13 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 39 H 0.08 2.63 8.04 -2.39 -0.02 2.62 16 40 H 0.12 5.04 7.32 -2.91 -0.02 5.02 16 41 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 42 H 0.12 4.57 8.06 -2.91 -0.02 4.55 16 43 H 0.11 5.47 6.78 -2.91 -0.02 5.45 16 44 H 0.29 12.60 8.30 -92.71 -0.77 11.83 16 Total: -1.00 -60.77 358.50 1.27 -59.49 By element: Atomic # 1 Polarization: 40.51 SS G_CDS: 1.00 Total: 41.52 kcal Atomic # 6 Polarization: -88.88 SS G_CDS: 3.77 Total: -85.11 kcal Atomic # 7 Polarization: -74.98 SS G_CDS: -1.30 Total: -76.27 kcal Atomic # 8 Polarization: -95.73 SS G_CDS: -3.89 Total: -99.62 kcal Atomic # 14 Polarization: 35.34 SS G_CDS: 1.97 Total: 37.32 kcal Atomic # 16 Polarization: 122.96 SS G_CDS: -0.29 Total: 122.68 kcal Total: -60.77 1.27 -59.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601302587.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.386 kcal (2) G-P(sol) polarization free energy of solvation -60.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds