Wall clock time and date at job start Tue Mar 31 2020 13:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47105 * 2 1 4 4 C 1.53074 * 109.44920 * 64.79233 * 3 2 1 5 5 C 1.53191 * 109.29267 * 181.24572 * 4 3 2 6 6 N 1.46927 * 108.89201 * 305.57261 * 5 4 3 7 7 S 1.65596 * 120.63427 * 233.56307 * 6 5 4 8 8 O 1.42100 * 106.40355 * 195.81562 * 7 6 5 9 9 O 1.42099 * 106.40128 * 328.73454 * 7 6 5 10 10 C 1.76199 * 107.22060 * 82.27477 * 7 6 5 11 11 C 1.37644 * 120.12730 * 246.42670 * 10 7 6 12 12 C 1.38611 * 120.24486 * 179.74137 * 11 10 7 13 13 C 1.38656 * 120.50534 * 0.51245 * 12 11 10 14 14 C 1.37600 * 120.24526 * 359.76422 * 13 12 11 15 15 C 1.40697 * 120.12852 * 66.69923 * 10 7 6 16 16 C 1.41392 * 120.24113 * 0.02562 * 15 10 7 17 17 H 1.08005 * 120.00351 * 27.49369 * 16 15 10 18 18 C 1.39949 * 119.99948 * 207.48273 * 16 15 10 19 19 N 1.30820 * 120.00022 * 14.94865 * 18 16 15 20 20 Si 1.86802 * 119.99878 * 194.94393 * 18 16 15 21 21 H 1.48504 * 109.46760 * 90.00597 * 20 18 16 22 22 H 1.48501 * 109.47112 * 209.99896 * 20 18 16 23 23 H 1.48502 * 109.47555 * 330.00473 * 20 18 16 24 24 C 1.46931 * 118.73570 * 53.54021 * 6 5 4 25 25 C 1.53040 * 109.45996 * 185.00076 * 3 2 1 26 26 H 1.08996 * 109.47094 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47413 * 299.99901 * 1 2 3 28 28 H 1.09004 * 109.47100 * 59.99941 * 1 2 3 29 29 H 1.09002 * 109.47187 * 240.00602 * 2 1 3 30 30 H 1.09001 * 109.47376 * 120.00505 * 2 1 3 31 31 H 1.08995 * 109.46008 * 304.97405 * 3 2 1 32 32 H 1.08993 * 109.39534 * 61.36677 * 4 3 2 33 33 H 1.09002 * 109.61986 * 301.25873 * 4 3 2 34 34 H 1.08998 * 109.58673 * 185.71846 * 5 4 3 35 35 H 1.08993 * 109.58859 * 65.43079 * 5 4 3 36 36 H 1.08001 * 119.87411 * 359.97438 * 11 10 7 37 37 H 1.08002 * 119.75097 * 180.25847 * 12 11 10 38 38 H 1.07995 * 119.88019 * 179.74508 * 13 12 11 39 39 H 1.08000 * 120.13024 * 179.97438 * 14 13 12 40 40 H 0.96997 * 120.00017 * 179.97438 * 19 18 16 41 41 H 1.08997 * 109.58925 * 66.18199 * 24 6 5 42 42 H 1.09005 * 109.58517 * 186.46008 * 24 6 5 43 43 H 1.09000 * 109.49904 * 58.66271 * 25 3 2 44 44 H 1.09001 * 109.52361 * 298.58353 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.6303 2.1280 1.3059 5 6 2.1156 3.5809 1.2889 6 7 3.5607 3.5967 1.0235 7 16 4.5965 4.3949 2.0394 8 8 5.8204 4.5396 1.3320 9 8 3.8703 5.4954 2.5692 10 6 4.9295 3.3196 3.3950 11 6 4.4927 3.6456 4.6589 12 6 4.7486 2.7989 5.7261 13 6 5.4553 1.6212 5.5363 14 6 5.9065 1.2779 4.2825 15 6 5.6479 2.1273 3.1906 16 6 6.1071 1.7852 1.8978 17 1 6.3188 2.5611 1.1770 18 6 6.2874 0.4411 1.5523 19 7 5.7664 -0.5010 2.2956 20 14 7.2718 -0.0078 0.0294 21 1 8.7024 -0.1675 0.3942 22 1 6.7592 -1.2829 -0.5332 23 1 7.1364 1.0700 -0.9831 24 6 4.0692 2.8903 -0.1602 25 6 3.5652 1.4441 -0.1258 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6056 1.9813 -0.8421 32 1 2.0824 1.6033 2.1475 33 1 0.5450 2.1081 1.4049 34 1 1.9166 4.0440 2.2553 35 1 1.5943 4.1311 0.5057 36 1 3.9452 4.5627 4.8190 37 1 4.3985 3.0605 6.7137 38 1 5.6526 0.9709 6.3757 39 1 6.4571 0.3603 4.1369 40 1 5.8911 -1.4326 2.0559 41 1 3.7070 3.3821 -1.0630 42 1 5.1592 2.8999 -0.1513 43 1 3.8549 0.9358 -1.0455 44 1 4.0017 0.9269 0.7287 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601313047.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:32 Heat of formation + Delta-G solvation = -76.262328 kcal Electronic energy + Delta-G solvation = -27583.496022 eV Core-core repulsion = 24012.421565 eV Total energy + Delta-G solvation = -3571.074456 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -38.44053 -37.56426 -36.35402 -34.88118 -34.29286 -33.92334 -30.64194 -30.22984 -29.74339 -29.51224 -25.56181 -24.58272 -22.87884 -21.73538 -21.13744 -21.11973 -19.61165 -18.08139 -17.69430 -17.07462 -15.96105 -15.50266 -15.18644 -14.56886 -14.44294 -14.12739 -13.94629 -13.68790 -13.56040 -13.25992 -13.18345 -12.82298 -12.72288 -12.31662 -11.98211 -11.90279 -11.57768 -11.44223 -11.31184 -11.22825 -11.15645 -11.07558 -11.04180 -10.71891 -10.64248 -10.56568 -10.53666 -10.25691 -9.90400 -9.89910 -9.70470 -9.36820 -9.17466 -8.31463 -7.99859 -7.61803 -7.09788 -4.77878 1.52722 2.34541 2.70532 2.93985 2.98786 3.08588 3.72847 3.88728 4.35383 4.76837 5.03667 5.07185 5.13941 5.30416 5.36206 5.45170 5.59166 5.68612 5.75834 5.82334 5.86380 5.96404 6.03627 6.06877 6.10102 6.20902 6.22691 6.25108 6.27297 6.39212 6.40294 6.47924 6.59633 6.68953 6.75387 6.85930 6.95950 7.06838 7.10860 7.31581 7.35035 7.52378 7.68372 7.81055 7.94511 8.34674 8.49420 8.65372 9.83145 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.009528 B = 0.008190 C = 0.006377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2938.037788 B = 3418.191267 C = 4389.653985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.079 4.079 4 C -0.129 4.129 5 C 0.131 3.869 6 N -0.991 5.991 7 S 2.702 3.298 8 O -0.975 6.975 9 O -0.997 6.997 10 C -0.776 4.776 11 C -0.003 4.003 12 C -0.250 4.250 13 C -0.077 4.077 14 C -0.159 4.159 15 C 0.193 3.807 16 C -0.471 4.471 17 H 0.116 0.884 18 C 0.087 3.913 19 N -0.773 5.773 20 Si 0.896 3.104 21 H -0.263 1.263 22 H -0.273 1.273 23 H -0.250 1.250 24 C 0.128 3.872 25 C -0.140 4.140 26 H 0.047 0.953 27 H 0.056 0.944 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.060 0.940 36 H 0.106 0.894 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.122 0.878 40 H 0.287 0.713 41 H 0.052 0.948 42 H 0.100 0.900 43 H 0.058 0.942 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.630 -1.602 -4.789 8.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C -0.097 4.097 4 C -0.168 4.168 5 C 0.005 3.995 6 N -0.827 5.827 7 S 2.801 3.199 8 O -0.965 6.965 9 O -0.988 6.988 10 C -0.871 4.871 11 C -0.023 4.023 12 C -0.271 4.271 13 C -0.096 4.096 14 C -0.179 4.179 15 C 0.188 3.812 16 C -0.499 4.499 17 H 0.133 0.867 18 C -0.135 4.135 19 N -0.395 5.395 20 Si 0.719 3.281 21 H -0.188 1.188 22 H -0.198 1.198 23 H -0.173 1.173 24 C 0.003 3.997 25 C -0.179 4.179 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.079 0.921 36 H 0.124 0.876 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.140 0.860 40 H 0.098 0.902 41 H 0.070 0.930 42 H 0.118 0.882 43 H 0.076 0.924 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -6.357 -0.980 -4.971 8.129 hybrid contribution 0.315 -1.205 -0.016 1.245 sum -6.042 -2.185 -4.987 8.133 Atomic orbital electron populations 1.21810 0.96492 1.00942 1.01571 1.21562 0.95168 0.96953 1.02025 1.21049 0.96097 0.95187 0.97394 1.22000 1.00028 0.96024 0.98772 1.21204 0.80423 0.96713 1.01180 1.57618 1.16494 1.70213 1.38384 1.01037 0.72385 0.73139 0.73293 1.93457 1.43569 1.86196 1.73309 1.93434 1.73726 1.51126 1.80524 1.29858 1.24487 1.19632 1.13164 1.20234 0.93752 0.96433 0.91841 1.20472 1.10885 0.98337 0.97363 1.20884 0.96699 0.95440 0.96550 1.21477 1.03592 1.01382 0.91432 1.16969 0.83783 0.87406 0.93007 1.20521 1.36952 0.93647 0.98764 0.86690 1.25924 0.93056 0.96054 0.98438 1.69813 1.31687 1.02024 1.36027 0.86458 0.80819 0.79233 0.81576 1.18817 1.19760 1.17298 1.21405 1.00500 0.91746 0.86098 1.22113 0.94906 0.97249 1.03600 0.93393 0.92511 0.93204 0.92531 0.91640 0.92057 0.90720 0.91611 0.90161 0.92144 0.87601 0.88850 0.88976 0.86020 0.90233 0.92973 0.88237 0.92360 0.88027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.67 37.16 0.36 -1.32 16 2 C -0.12 -1.58 5.40 -26.73 -0.14 -1.72 16 3 C -0.08 -1.12 2.15 -90.56 -0.19 -1.31 16 4 C -0.13 -1.92 5.15 -26.59 -0.14 -2.06 16 5 C 0.13 2.09 6.35 -3.71 -0.02 2.07 16 6 N -0.99 -18.56 3.29 -113.52 -0.37 -18.94 16 7 S 2.70 59.82 5.06 -107.50 -0.54 59.28 16 8 O -0.97 -23.53 14.36 -57.17 -0.82 -24.35 16 9 O -1.00 -22.97 15.96 -57.17 -0.91 -23.89 16 10 C -0.78 -18.38 5.97 -38.87 -0.23 -18.61 16 11 C 0.00 -0.06 9.54 -39.66 -0.38 -0.44 16 12 C -0.25 -5.45 10.05 -39.29 -0.39 -5.85 16 13 C -0.08 -1.71 10.02 -39.66 -0.40 -2.10 16 14 C -0.16 -3.84 8.67 -38.87 -0.34 -4.18 16 15 C 0.19 4.76 5.55 -106.83 -0.59 4.16 16 16 C -0.47 -11.16 6.00 -37.74 -0.23 -11.38 16 17 H 0.12 2.77 3.69 -52.48 -0.19 2.58 16 18 C 0.09 1.91 3.77 -17.34 -0.07 1.84 16 19 N -0.77 -17.15 10.99 55.55 0.61 -16.54 16 20 Si 0.90 16.97 29.58 -169.99 -5.03 11.94 16 21 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 22 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 23 H -0.25 -4.66 7.11 56.52 0.40 -4.25 16 24 C 0.13 2.24 5.49 -3.71 -0.02 2.22 16 25 C -0.14 -2.32 5.23 -26.61 -0.14 -2.46 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.62 6.53 -51.93 -0.34 0.29 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.07 0.82 6.51 -51.93 -0.34 0.49 16 34 H 0.08 1.30 7.35 -51.93 -0.38 0.92 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.11 2.24 7.32 -52.49 -0.38 1.85 16 37 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 38 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 39 H 0.12 2.95 6.28 -52.49 -0.33 2.62 16 40 H 0.29 5.81 8.30 -40.82 -0.34 5.47 16 41 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.10 1.93 4.94 -51.93 -0.26 1.67 16 43 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.10 1.98 5.59 -51.93 -0.29 1.69 16 LS Contribution 345.48 15.07 5.21 5.21 Total: -1.00 -27.02 345.48 -11.09 -38.11 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -6.30 Total: 10.32 kcal Atomic # 6 Polarization: -38.21 SS G_CDS: -2.92 Total: -41.14 kcal Atomic # 7 Polarization: -35.71 SS G_CDS: 0.24 Total: -35.47 kcal Atomic # 8 Polarization: -46.51 SS G_CDS: -1.73 Total: -48.24 kcal Atomic # 14 Polarization: 16.97 SS G_CDS: -5.03 Total: 11.94 kcal Atomic # 16 Polarization: 59.82 SS G_CDS: -0.54 Total: 59.28 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -27.02 -11.09 -38.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601313047.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.154 kcal (2) G-P(sol) polarization free energy of solvation -27.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds