Wall clock time and date at job start Tue Mar 31 2020 13:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47105 * 2 1 4 4 C 1.53074 * 109.44920 * 64.79233 * 3 2 1 5 5 C 1.53191 * 109.29267 * 181.24572 * 4 3 2 6 6 N 1.46927 * 108.89201 * 305.57261 * 5 4 3 7 7 S 1.65596 * 120.63427 * 233.56307 * 6 5 4 8 8 O 1.42100 * 106.40355 * 195.81562 * 7 6 5 9 9 O 1.42099 * 106.40128 * 328.73454 * 7 6 5 10 10 C 1.76199 * 107.22060 * 82.27477 * 7 6 5 11 11 C 1.37644 * 120.12730 * 246.42670 * 10 7 6 12 12 C 1.38611 * 120.24486 * 179.74137 * 11 10 7 13 13 C 1.38656 * 120.50534 * 0.51245 * 12 11 10 14 14 C 1.37600 * 120.24526 * 359.76422 * 13 12 11 15 15 C 1.40697 * 120.12852 * 66.69923 * 10 7 6 16 16 C 1.41392 * 120.24113 * 0.02562 * 15 10 7 17 17 H 1.08005 * 120.00351 * 27.49369 * 16 15 10 18 18 C 1.39949 * 119.99948 * 207.48273 * 16 15 10 19 19 N 1.30820 * 120.00022 * 14.94865 * 18 16 15 20 20 Si 1.86802 * 119.99878 * 194.94393 * 18 16 15 21 21 H 1.48504 * 109.46760 * 90.00597 * 20 18 16 22 22 H 1.48501 * 109.47112 * 209.99896 * 20 18 16 23 23 H 1.48502 * 109.47555 * 330.00473 * 20 18 16 24 24 C 1.46931 * 118.73570 * 53.54021 * 6 5 4 25 25 C 1.53040 * 109.45996 * 185.00076 * 3 2 1 26 26 H 1.08996 * 109.47094 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47413 * 299.99901 * 1 2 3 28 28 H 1.09004 * 109.47100 * 59.99941 * 1 2 3 29 29 H 1.09002 * 109.47187 * 240.00602 * 2 1 3 30 30 H 1.09001 * 109.47376 * 120.00505 * 2 1 3 31 31 H 1.08995 * 109.46008 * 304.97405 * 3 2 1 32 32 H 1.08993 * 109.39534 * 61.36677 * 4 3 2 33 33 H 1.09002 * 109.61986 * 301.25873 * 4 3 2 34 34 H 1.08998 * 109.58673 * 185.71846 * 5 4 3 35 35 H 1.08993 * 109.58859 * 65.43079 * 5 4 3 36 36 H 1.08001 * 119.87411 * 359.97438 * 11 10 7 37 37 H 1.08002 * 119.75097 * 180.25847 * 12 11 10 38 38 H 1.07995 * 119.88019 * 179.74508 * 13 12 11 39 39 H 1.08000 * 120.13024 * 179.97438 * 14 13 12 40 40 H 0.96997 * 120.00017 * 179.97438 * 19 18 16 41 41 H 1.08997 * 109.58925 * 66.18199 * 24 6 5 42 42 H 1.09005 * 109.58517 * 186.46008 * 24 6 5 43 43 H 1.09000 * 109.49904 * 58.66271 * 25 3 2 44 44 H 1.09001 * 109.52361 * 298.58353 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.6303 2.1280 1.3059 5 6 2.1156 3.5809 1.2889 6 7 3.5607 3.5967 1.0235 7 16 4.5965 4.3949 2.0394 8 8 5.8204 4.5396 1.3320 9 8 3.8703 5.4954 2.5692 10 6 4.9295 3.3196 3.3950 11 6 4.4927 3.6456 4.6589 12 6 4.7486 2.7989 5.7261 13 6 5.4553 1.6212 5.5363 14 6 5.9065 1.2779 4.2825 15 6 5.6479 2.1273 3.1906 16 6 6.1071 1.7852 1.8978 17 1 6.3188 2.5611 1.1770 18 6 6.2874 0.4411 1.5523 19 7 5.7664 -0.5010 2.2956 20 14 7.2718 -0.0078 0.0294 21 1 8.7024 -0.1675 0.3942 22 1 6.7592 -1.2829 -0.5332 23 1 7.1364 1.0700 -0.9831 24 6 4.0692 2.8903 -0.1602 25 6 3.5652 1.4441 -0.1258 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6056 1.9813 -0.8421 32 1 2.0824 1.6033 2.1475 33 1 0.5450 2.1081 1.4049 34 1 1.9166 4.0440 2.2553 35 1 1.5943 4.1311 0.5057 36 1 3.9452 4.5627 4.8190 37 1 4.3985 3.0605 6.7137 38 1 5.6526 0.9709 6.3757 39 1 6.4571 0.3603 4.1369 40 1 5.8911 -1.4326 2.0559 41 1 3.7070 3.3821 -1.0630 42 1 5.1592 2.8999 -0.1513 43 1 3.8549 0.9358 -1.0455 44 1 4.0017 0.9269 0.7287 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601313047.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:31 Heat of formation + Delta-G solvation = -90.579499 kcal Electronic energy + Delta-G solvation = -27584.116861 eV Core-core repulsion = 24012.421565 eV Total energy + Delta-G solvation = -3571.695296 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.74694 -39.27913 -38.14772 -36.68999 -35.71235 -35.44322 -32.02682 -31.90250 -31.33758 -30.84655 -27.30690 -25.77053 -24.17069 -23.45612 -22.89252 -22.33720 -20.88281 -19.69119 -19.43041 -18.69734 -17.68011 -17.17851 -16.79737 -16.07830 -15.65585 -15.53718 -15.33471 -15.10627 -14.99306 -14.81619 -14.68823 -14.44475 -14.03906 -13.77462 -13.61402 -13.23837 -13.09246 -12.98243 -12.91258 -12.86466 -12.73770 -12.59977 -12.49815 -12.21219 -12.13576 -11.94973 -11.81167 -11.62439 -11.44729 -11.19114 -11.02216 -10.92664 -10.88194 -9.85999 -9.65613 -9.41056 -8.78354 -6.55836 -0.16225 0.57258 0.99192 1.37761 1.47769 1.49491 2.15680 2.29396 2.63728 3.02937 3.53072 3.68634 3.87474 3.94681 3.97812 4.29881 4.32953 4.39653 4.49567 4.51453 4.58563 4.66504 4.72556 4.73335 4.79895 4.89515 4.94114 4.97075 5.02734 5.11025 5.18553 5.23570 5.29179 5.31268 5.33803 5.47959 5.53112 5.54770 5.57953 5.73144 5.82595 5.86409 5.95499 6.03041 6.17993 6.55705 6.73868 6.87293 8.17213 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.009528 B = 0.008190 C = 0.006377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2938.037788 B = 3418.191267 C = 4389.653985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 C -0.074 4.074 4 C -0.123 4.123 5 C 0.122 3.878 6 N -0.988 5.988 7 S 2.714 3.286 8 O -1.001 7.001 9 O -1.010 7.010 10 C -0.797 4.797 11 C -0.016 4.016 12 C -0.255 4.255 13 C -0.078 4.078 14 C -0.186 4.186 15 C 0.168 3.832 16 C -0.484 4.484 17 H 0.107 0.893 18 C 0.067 3.933 19 N -0.788 5.788 20 Si 0.941 3.059 21 H -0.267 1.267 22 H -0.255 1.255 23 H -0.246 1.246 24 C 0.122 3.878 25 C -0.140 4.140 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.039 0.961 31 H 0.086 0.914 32 H 0.039 0.961 33 H 0.094 0.906 34 H 0.073 0.927 35 H 0.093 0.907 36 H 0.117 0.883 37 H 0.123 0.877 38 H 0.119 0.881 39 H 0.113 0.887 40 H 0.295 0.705 41 H 0.084 0.916 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.226 -2.026 -6.148 10.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C -0.093 4.093 4 C -0.162 4.162 5 C -0.003 4.003 6 N -0.826 5.826 7 S 2.813 3.187 8 O -0.991 6.991 9 O -1.001 7.001 10 C -0.891 4.891 11 C -0.036 4.036 12 C -0.275 4.275 13 C -0.097 4.097 14 C -0.206 4.206 15 C 0.164 3.836 16 C -0.511 4.511 17 H 0.124 0.876 18 C -0.154 4.154 19 N -0.411 5.411 20 Si 0.761 3.239 21 H -0.192 1.192 22 H -0.179 1.179 23 H -0.169 1.169 24 C -0.003 4.003 25 C -0.179 4.179 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.058 0.942 31 H 0.104 0.896 32 H 0.058 0.942 33 H 0.112 0.888 34 H 0.091 0.909 35 H 0.111 0.889 36 H 0.135 0.865 37 H 0.141 0.859 38 H 0.137 0.863 39 H 0.131 0.869 40 H 0.106 0.894 41 H 0.102 0.898 42 H 0.095 0.905 43 H 0.092 0.908 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.960 -1.412 -6.303 10.251 hybrid contribution 0.779 -1.086 0.437 1.406 sum -7.181 -2.498 -5.866 9.603 Atomic orbital electron populations 1.21772 0.94554 1.01736 1.02289 1.21512 0.96815 0.95977 1.01102 1.21048 0.94405 0.96105 0.97712 1.21952 1.01418 0.94850 0.97955 1.21514 0.78862 0.97884 1.02056 1.57405 1.17250 1.70050 1.37892 1.00529 0.72173 0.73007 0.73037 1.93412 1.45355 1.86677 1.73685 1.93403 1.73846 1.51867 1.80953 1.30159 1.24807 1.19701 1.14410 1.20529 0.93942 0.97155 0.91992 1.20825 1.10298 0.97878 0.98500 1.21200 0.95843 0.95920 0.96688 1.21531 1.05008 1.01573 0.92445 1.17258 0.84541 0.88119 0.93711 1.20544 1.37774 0.94367 0.98425 0.87565 1.26407 0.93199 0.95345 1.00442 1.69822 1.31666 1.02579 1.37041 0.85795 0.79305 0.79764 0.79055 1.19194 1.17880 1.16933 1.21557 0.99450 0.92716 0.86557 1.22082 0.96617 0.96236 1.02936 0.92692 0.92523 0.91653 0.91847 0.94223 0.89587 0.94180 0.88767 0.90855 0.88918 0.86486 0.85899 0.86325 0.86949 0.89390 0.89776 0.90527 0.90795 0.91263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 9.67 71.98 0.70 -2.12 16 2 C -0.12 -2.85 5.40 30.60 0.17 -2.68 16 3 C -0.07 -1.94 2.15 -10.75 -0.02 -1.97 16 4 C -0.12 -3.47 5.15 30.68 0.16 -3.31 16 5 C 0.12 3.69 6.35 86.36 0.55 4.24 16 6 N -0.99 -36.47 3.29 -513.07 -1.69 -38.15 16 7 S 2.71 121.87 5.06 -56.49 -0.29 121.58 16 8 O -1.00 -49.52 14.36 -128.00 -1.84 -51.36 16 9 O -1.01 -46.67 15.96 -128.00 -2.04 -48.72 16 10 C -0.80 -38.64 5.97 22.73 0.14 -38.50 16 11 C -0.02 -0.75 9.54 22.22 0.21 -0.54 16 12 C -0.25 -10.97 10.05 22.46 0.23 -10.75 16 13 C -0.08 -3.45 10.02 22.22 0.22 -3.23 16 14 C -0.19 -9.20 8.67 22.73 0.20 -9.00 16 15 C 0.17 8.55 5.55 -21.29 -0.12 8.43 16 16 C -0.48 -23.57 6.00 23.46 0.14 -23.43 16 17 H 0.11 5.30 3.69 -2.91 -0.01 5.29 16 18 C 0.07 2.96 3.77 85.26 0.32 3.29 16 19 N -0.79 -35.58 10.99 21.83 0.24 -35.34 16 20 Si 0.94 34.40 29.58 68.60 2.03 36.43 16 21 H -0.27 -9.89 7.11 99.48 0.71 -9.18 16 22 H -0.26 -8.54 7.11 99.48 0.71 -7.84 16 23 H -0.25 -8.81 7.11 99.48 0.71 -8.10 16 24 C 0.12 4.16 5.49 86.36 0.47 4.63 16 25 C -0.14 -4.48 5.23 30.67 0.16 -4.32 16 26 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.06 1.08 6.53 -2.39 -0.02 1.07 16 28 H 0.06 1.07 8.14 -2.38 -0.02 1.06 16 29 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.04 1.40 8.14 -2.39 -0.02 1.39 16 33 H 0.09 2.11 6.51 -2.39 -0.02 2.09 16 34 H 0.07 2.32 7.35 -2.39 -0.02 2.30 16 35 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.12 4.95 7.32 -2.91 -0.02 4.93 16 37 H 0.12 4.46 8.06 -2.91 -0.02 4.44 16 38 H 0.12 4.50 8.06 -2.91 -0.02 4.47 16 39 H 0.11 5.64 6.28 -2.91 -0.02 5.62 16 40 H 0.29 12.02 8.30 -92.71 -0.77 11.25 16 41 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 42 H 0.08 2.99 4.94 -2.38 -0.01 2.97 16 43 H 0.07 2.08 8.14 -2.39 -0.02 2.07 16 44 H 0.07 2.71 5.59 -2.39 -0.01 2.70 16 Total: -1.00 -59.29 345.48 0.94 -58.35 By element: Atomic # 1 Polarization: 35.45 SS G_CDS: 1.01 Total: 36.46 kcal Atomic # 6 Polarization: -82.77 SS G_CDS: 3.52 Total: -79.25 kcal Atomic # 7 Polarization: -72.04 SS G_CDS: -1.45 Total: -73.49 kcal Atomic # 8 Polarization: -96.19 SS G_CDS: -3.88 Total: -100.07 kcal Atomic # 14 Polarization: 34.40 SS G_CDS: 2.03 Total: 36.43 kcal Atomic # 16 Polarization: 121.87 SS G_CDS: -0.29 Total: 121.58 kcal Total: -59.29 0.94 -58.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601313047.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.233 kcal (2) G-P(sol) polarization free energy of solvation -59.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds