Wall clock time and date at job start Tue Mar 31 2020 14:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46940 * 2 1 4 4 C 1.52994 * 109.47165 * 120.00105 * 2 1 3 5 5 H 1.09007 * 109.99936 * 58.90894 * 4 2 1 6 6 C 1.54329 * 109.99555 * 297.86795 * 4 2 1 7 7 C 1.55154 * 103.02476 * 218.66716 * 6 4 2 8 8 C 1.54915 * 101.57993 * 35.30621 * 7 6 4 9 9 N 1.47019 * 109.88125 * 179.97438 * 4 2 1 10 10 S 1.65597 * 125.65320 * 298.39500 * 9 4 2 11 11 O 1.42098 * 106.40597 * 162.96095 * 10 9 4 12 12 O 1.42102 * 106.40153 * 30.04500 * 10 9 4 13 13 C 1.76200 * 107.22049 * 276.50539 * 10 9 4 14 14 C 1.37639 * 120.12780 * 113.33047 * 13 10 9 15 15 C 1.38612 * 120.24802 * 180.02562 * 14 13 10 16 16 C 1.38657 * 120.49990 * 0.02562 * 15 14 13 17 17 C 1.37591 * 120.24814 * 359.67148 * 16 15 14 18 18 C 1.40697 * 120.12650 * 293.35693 * 13 10 9 19 19 C 1.41389 * 120.24317 * 359.97438 * 18 13 10 20 20 H 1.08003 * 120.00537 * 330.62573 * 19 18 13 21 21 C 1.39949 * 119.99757 * 150.63046 * 19 18 13 22 22 N 1.30817 * 120.00191 * 336.84998 * 21 19 18 23 23 Si 1.86809 * 119.99814 * 156.84899 * 21 19 18 24 24 H 1.48499 * 109.46634 * 179.97438 * 23 21 19 25 25 H 1.48491 * 109.47418 * 300.00346 * 23 21 19 26 26 H 1.48500 * 109.46883 * 60.00343 * 23 21 19 27 27 H 1.09004 * 109.46854 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47154 * 299.99360 * 1 2 3 29 29 H 1.09004 * 109.47081 * 60.00075 * 1 2 3 30 30 H 1.09008 * 109.46838 * 240.00474 * 2 1 3 31 31 H 1.09000 * 109.46980 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.46993 * 300.00368 * 3 2 1 33 33 H 1.09000 * 109.46674 * 60.00346 * 3 2 1 34 34 H 1.08998 * 110.85087 * 100.19460 * 6 4 2 35 35 H 1.09004 * 110.66444 * 337.04716 * 6 4 2 36 36 H 1.08994 * 111.00237 * 277.23239 * 7 6 4 37 37 H 1.08998 * 111.04154 * 153.39098 * 7 6 4 38 38 H 1.09006 * 110.36088 * 204.15444 * 8 7 6 39 39 H 1.08993 * 110.36696 * 81.83132 * 8 7 6 40 40 H 1.07997 * 119.87535 * 0.02562 * 14 13 10 41 41 H 1.07997 * 119.75046 * 179.97438 * 15 14 13 42 42 H 1.08007 * 119.87408 * 179.97438 * 16 15 14 43 43 H 1.08006 * 120.12688 * 180.30409 * 17 16 15 44 44 H 0.97002 * 119.99911 * 354.25509 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6656 -1.7448 1.2677 6 6 1.5768 0.0273 2.5168 7 6 2.8066 -0.0820 3.4564 8 6 3.9782 0.0091 2.4471 9 7 3.5102 -0.7270 1.2580 10 16 4.4794 -1.4362 0.1178 11 8 5.7736 -0.8738 0.2854 12 8 3.7620 -1.3835 -1.1076 13 6 4.6193 -3.1412 0.5396 14 6 4.0717 -4.1026 -0.2791 15 6 4.1798 -5.4446 0.0505 16 6 4.8388 -5.8344 1.2065 17 6 5.3993 -4.8909 2.0365 18 6 5.2908 -3.5252 1.7149 19 6 5.8572 -2.5464 2.5636 20 1 6.2078 -1.6117 2.1514 21 6 5.9637 -2.7888 3.9378 22 7 5.1743 -3.6601 4.5114 23 14 7.2331 -1.8682 4.9530 24 1 7.1427 -2.3022 6.3703 25 1 8.5919 -2.1613 4.4307 26 1 6.9733 -0.4087 4.8652 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 0.7084 -0.4603 2.9597 35 1 1.3571 1.0704 2.2889 36 1 2.8149 -1.0383 3.9794 37 1 2.8342 0.7475 4.1630 38 1 4.8707 -0.4629 2.8583 39 1 4.1808 1.0497 2.1939 40 1 3.5559 -3.8102 -1.1818 41 1 3.7468 -6.1922 -0.5975 42 1 4.9167 -6.8829 1.4538 43 1 5.9164 -5.1971 2.9340 44 1 4.4608 -4.0766 4.0030 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601319452.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:07 Heat of formation + Delta-G solvation = -86.656990 kcal Electronic energy + Delta-G solvation = -27578.472634 eV Core-core repulsion = 24006.947431 eV Total energy + Delta-G solvation = -3571.525203 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.17487 -39.64481 -38.20151 -36.75356 -35.91456 -35.17756 -32.03701 -31.75893 -31.27708 -28.97840 -27.90272 -27.16150 -24.02706 -23.53793 -23.01863 -22.59579 -20.74734 -20.19853 -19.44459 -18.33613 -17.95400 -17.17511 -16.69156 -16.52294 -15.93214 -15.71349 -15.64694 -15.11638 -14.90603 -14.58773 -14.49089 -14.33312 -14.02899 -13.94435 -13.40955 -13.10023 -13.06403 -12.95743 -12.92972 -12.84431 -12.80235 -12.65230 -12.57794 -12.26878 -12.02543 -12.02354 -11.91553 -11.73220 -11.59935 -11.33742 -11.13923 -11.00496 -10.92358 -10.07625 -9.71788 -9.66092 -9.30657 -6.72512 -0.26232 0.39704 0.83456 1.49279 1.59428 1.78443 2.23139 2.25940 2.55046 2.93639 3.30563 3.48912 3.71908 3.88583 3.98148 4.16058 4.24190 4.27058 4.29591 4.34840 4.56757 4.58522 4.66880 4.71564 4.76960 4.88843 4.95516 4.99719 5.04392 5.07321 5.11056 5.13884 5.19921 5.30961 5.32621 5.34642 5.40609 5.46463 5.52601 5.58133 5.65385 5.72010 5.80356 5.82558 5.97728 6.15282 6.55736 6.74432 7.90794 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012272 B = 0.007215 C = 0.005634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.076478 B = 3879.798666 C = 4969.032707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.132 4.132 3 C -0.140 4.140 4 C 0.151 3.849 5 H 0.053 0.947 6 C -0.113 4.113 7 C -0.121 4.121 8 C 0.107 3.893 9 N -0.995 5.995 10 S 2.731 3.269 11 O -1.003 7.003 12 O -0.998 6.998 13 C -0.803 4.803 14 C -0.004 4.004 15 C -0.261 4.261 16 C -0.055 4.055 17 C -0.234 4.234 18 C 0.147 3.853 19 C -0.542 4.542 20 H 0.104 0.896 21 C 0.023 3.977 22 N -0.787 5.787 23 Si 1.090 2.910 24 H -0.263 1.263 25 H -0.270 1.270 26 H -0.245 1.245 27 H 0.051 0.949 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.028 0.972 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.055 0.945 37 H 0.105 0.895 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.121 0.879 41 H 0.130 0.870 42 H 0.127 0.873 43 H 0.100 0.900 44 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.393 7.523 0.761 11.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.152 4.152 3 C -0.197 4.197 4 C 0.046 3.954 5 H 0.071 0.929 6 C -0.151 4.151 7 C -0.160 4.160 8 C -0.018 4.018 9 N -0.833 5.833 10 S 2.830 3.170 11 O -0.994 6.994 12 O -0.989 6.989 13 C -0.896 4.896 14 C -0.024 4.024 15 C -0.281 4.281 16 C -0.073 4.073 17 C -0.253 4.253 18 C 0.143 3.857 19 C -0.568 4.568 20 H 0.122 0.878 21 C -0.198 4.198 22 N -0.407 5.407 23 Si 0.906 3.094 24 H -0.187 1.187 25 H -0.195 1.195 26 H -0.168 1.168 27 H 0.070 0.930 28 H 0.095 0.905 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.047 0.953 32 H 0.080 0.920 33 H 0.099 0.901 34 H 0.110 0.890 35 H 0.120 0.880 36 H 0.073 0.927 37 H 0.123 0.877 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.139 0.861 41 H 0.148 0.852 42 H 0.145 0.855 43 H 0.118 0.882 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.361 8.020 1.522 10.992 hybrid contribution -0.339 -1.590 -1.477 2.196 sum -7.699 6.431 0.045 10.032 Atomic orbital electron populations 1.21742 0.92471 1.02066 1.03036 1.21842 0.97910 0.97511 0.97947 1.21820 0.99724 0.95412 1.02766 1.21512 0.77898 0.98887 0.97148 0.92867 1.22770 0.97826 1.02049 0.92501 1.22704 0.93634 1.02694 0.97011 1.22348 0.99085 0.95741 0.84626 1.58255 1.16270 1.68231 1.40517 0.99980 0.71728 0.73561 0.71713 1.93414 1.40393 1.78988 1.86557 1.93388 1.73811 1.88068 1.43596 1.30294 1.24119 1.22584 1.12633 1.20639 0.92378 0.93562 0.95783 1.20882 1.11025 0.95394 1.00804 1.21205 0.93841 0.98811 0.93465 1.21391 1.07925 0.93552 1.02480 1.17333 0.85607 0.93301 0.89509 1.21465 1.35156 1.04727 0.95477 0.87805 1.28156 0.99327 0.95244 0.97044 1.70552 1.11163 1.17796 1.41236 0.83379 0.73700 0.77120 0.75156 1.18692 1.19521 1.16815 0.92963 0.90541 0.91742 0.91114 0.95306 0.92002 0.90068 0.89026 0.87954 0.92663 0.87693 0.91115 0.90938 0.86089 0.85197 0.85489 0.88202 0.89832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 8.99 71.98 0.65 -2.19 16 2 C -0.13 -3.75 2.57 -10.79 -0.03 -3.78 16 3 C -0.14 -3.56 8.77 71.98 0.63 -2.93 16 4 C 0.15 4.68 2.91 45.34 0.13 4.82 16 5 H 0.05 1.77 8.14 -2.38 -0.02 1.76 16 6 C -0.11 -2.61 5.24 31.78 0.17 -2.45 16 7 C -0.12 -3.29 7.09 31.99 0.23 -3.07 16 8 C 0.11 3.65 6.72 86.85 0.58 4.23 16 9 N -1.00 -37.52 2.65 -484.13 -1.28 -38.81 16 10 S 2.73 124.94 5.29 -56.49 -0.30 124.64 16 11 O -1.00 -51.28 15.06 -128.00 -1.93 -53.21 16 12 O -1.00 -45.83 14.10 -128.00 -1.80 -47.63 16 13 C -0.80 -39.53 5.97 22.73 0.14 -39.39 16 14 C 0.00 -0.18 9.54 22.22 0.21 0.03 16 15 C -0.26 -11.05 10.05 22.46 0.23 -10.82 16 16 C -0.05 -2.38 10.02 22.22 0.22 -2.15 16 17 C -0.23 -11.54 7.93 22.73 0.18 -11.36 16 18 C 0.15 7.61 5.22 -21.29 -0.11 7.50 16 19 C -0.54 -27.33 6.32 23.46 0.15 -27.18 16 20 H 0.10 5.41 4.43 -2.91 -0.01 5.40 16 21 C 0.02 1.08 4.92 85.26 0.42 1.50 16 22 N -0.79 -38.10 12.44 21.83 0.27 -37.83 16 23 Si 1.09 40.27 29.99 68.60 2.06 42.33 16 24 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 25 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 26 H -0.24 -8.11 7.11 99.48 0.71 -7.41 16 27 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 28 H 0.08 1.26 7.19 -2.39 -0.02 1.25 16 29 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 30 H 0.07 2.49 5.71 -2.38 -0.01 2.47 16 31 H 0.03 0.85 7.63 -2.39 -0.02 0.83 16 32 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.08 1.62 5.99 -2.39 -0.01 1.60 16 34 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.10 1.88 5.47 -2.38 -0.01 1.87 16 36 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.07 2.81 5.03 -2.38 -0.01 2.80 16 39 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.12 5.10 7.32 -2.91 -0.02 5.08 16 41 H 0.13 4.56 8.06 -2.91 -0.02 4.54 16 42 H 0.13 4.62 8.06 -2.91 -0.02 4.59 16 43 H 0.10 5.02 6.74 -2.91 -0.02 5.00 16 44 H 0.29 14.61 6.69 -92.71 -0.62 13.99 16 Total: -1.00 -62.29 346.56 1.96 -60.33 By element: Atomic # 1 Polarization: 36.27 SS G_CDS: 1.16 Total: 37.42 kcal Atomic # 6 Polarization: -91.04 SS G_CDS: 3.79 Total: -87.25 kcal Atomic # 7 Polarization: -75.63 SS G_CDS: -1.01 Total: -76.64 kcal Atomic # 8 Polarization: -97.11 SS G_CDS: -3.73 Total: -100.84 kcal Atomic # 14 Polarization: 40.27 SS G_CDS: 2.06 Total: 42.33 kcal Atomic # 16 Polarization: 124.94 SS G_CDS: -0.30 Total: 124.64 kcal Total: -62.29 1.96 -60.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601319452.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.324 kcal (2) G-P(sol) polarization free energy of solvation -62.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds