Wall clock time and date at job start Tue Mar 31 2020 14:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47295 * 2 1 4 4 C 1.53002 * 109.47493 * 120.00424 * 2 1 3 5 5 H 1.08997 * 109.99651 * 180.71562 * 4 2 1 6 6 C 1.54316 * 109.76870 * 301.86697 * 4 2 1 7 7 C 1.55159 * 102.85772 * 141.88378 * 6 4 2 8 8 C 1.54907 * 101.58542 * 324.30656 * 7 6 4 9 9 N 1.47020 * 109.88306 * 59.61593 * 4 2 1 10 10 S 1.65604 * 125.64497 * 61.67940 * 9 4 2 11 11 O 1.42104 * 106.40009 * 156.12662 * 10 9 4 12 12 O 1.42094 * 106.40111 * 23.20957 * 10 9 4 13 13 C 1.76195 * 107.21991 * 269.66781 * 10 9 4 14 14 C 1.37635 * 120.12628 * 113.58903 * 13 10 9 15 15 C 1.38615 * 120.24668 * 180.02562 * 14 13 10 16 16 C 1.38654 * 120.50319 * 359.97438 * 15 14 13 17 17 C 1.37599 * 120.24976 * 359.97438 * 16 15 14 18 18 C 1.40703 * 120.12724 * 293.58772 * 13 10 9 19 19 C 1.41397 * 120.24275 * 0.02562 * 18 13 10 20 20 H 1.07992 * 119.99842 * 328.22143 * 19 18 13 21 21 C 1.39952 * 119.99728 * 148.22530 * 19 18 13 22 22 N 1.30826 * 119.99915 * 345.44525 * 21 19 18 23 23 Si 1.86797 * 119.99592 * 165.44357 * 21 19 18 24 24 H 1.48505 * 109.47080 * 60.00269 * 23 21 19 25 25 H 1.48500 * 109.46988 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47378 * 300.00196 * 23 21 19 27 27 H 1.09001 * 109.46914 * 306.29168 * 1 2 3 28 28 H 1.08996 * 109.47416 * 66.28942 * 1 2 3 29 29 H 1.09001 * 109.47562 * 186.29787 * 1 2 3 30 30 H 1.09009 * 109.46962 * 240.00463 * 2 1 3 31 31 H 1.09003 * 109.47739 * 182.55716 * 3 2 1 32 32 H 1.09007 * 109.47477 * 302.55468 * 3 2 1 33 33 H 1.09001 * 109.47514 * 62.55257 * 3 2 1 34 34 H 1.08994 * 110.92668 * 23.47577 * 6 4 2 35 35 H 1.08994 * 110.59480 * 260.14231 * 6 4 2 36 36 H 1.09003 * 111.00743 * 206.22277 * 7 6 4 37 37 H 1.09009 * 111.03680 * 82.39499 * 7 6 4 38 38 H 1.09004 * 110.36159 * 278.16724 * 8 7 6 39 39 H 1.09000 * 110.46243 * 155.89916 * 8 7 6 40 40 H 1.07997 * 119.87833 * 0.02562 * 14 13 10 41 41 H 1.07998 * 119.74973 * 180.02562 * 15 14 13 42 42 H 1.08006 * 119.87789 * 180.02562 * 16 15 14 43 43 H 1.07997 * 120.13322 * 179.72254 * 17 16 15 44 44 H 0.96997 * 119.99430 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 3.1299 -0.7152 1.2642 6 6 1.4912 -0.0272 2.5134 7 6 1.1946 -1.2196 3.4608 8 6 0.7097 -2.2985 2.4606 9 7 1.5475 -2.1065 1.2629 10 16 1.8839 -3.2617 0.1251 11 8 1.7138 -4.5183 0.7666 12 8 3.0967 -2.8668 -0.5012 13 6 0.6304 -3.1592 -1.1089 14 6 0.9489 -2.7547 -2.3853 15 6 -0.0354 -2.6727 -3.3578 16 6 -1.3497 -2.9967 -3.0580 17 6 -1.6909 -3.4046 -1.7889 18 6 -0.7001 -3.4906 -0.7932 19 6 -1.0392 -3.9070 0.5149 20 1 -0.3230 -4.4537 1.1102 21 6 -2.3029 -3.6105 1.0381 22 7 -3.0610 -2.7198 0.4519 23 14 -2.9071 -4.4866 2.5732 24 1 -1.9789 -4.2098 3.6989 25 1 -4.2653 -3.9968 2.9204 26 1 -2.9573 -5.9492 2.3211 27 1 -0.3633 0.6083 0.8283 28 1 -0.3634 0.4132 -0.9409 29 1 -0.3634 -1.0214 0.1127 30 1 1.8933 -0.5138 -0.8901 31 1 3.1291 1.4429 -0.0458 32 1 1.6398 1.9694 -0.8662 33 1 1.7145 1.9430 0.9120 34 1 0.5779 0.5239 2.2895 35 1 2.2440 0.6315 2.9465 36 1 0.4097 -0.9665 4.1735 37 1 2.0984 -1.5435 3.9770 38 1 -0.3416 -2.1446 2.2168 39 1 0.8605 -3.2960 2.8732 40 1 1.9695 -2.5003 -2.6301 41 1 0.2236 -2.3547 -4.3569 42 1 -2.1085 -2.9296 -3.8237 43 1 -2.7161 -3.6522 -1.5563 44 1 -3.9370 -2.5146 0.8144 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601319453.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:11 Heat of formation + Delta-G solvation = -81.990790 kcal Electronic energy + Delta-G solvation = -28041.615142 eV Core-core repulsion = 24470.292281 eV Total energy + Delta-G solvation = -3571.322861 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.16247 -39.33123 -38.14116 -36.70581 -35.65052 -35.15676 -32.07294 -31.63650 -31.34666 -28.87221 -27.81236 -27.23821 -23.95629 -23.37076 -22.89399 -22.55810 -20.65602 -19.45515 -19.33942 -18.48385 -17.66141 -17.12359 -17.05344 -16.48747 -16.01716 -15.73168 -15.14419 -14.98470 -14.72792 -14.61814 -14.40788 -14.24569 -13.91484 -13.63704 -13.32725 -13.08498 -12.98782 -12.94679 -12.89796 -12.88698 -12.77355 -12.64063 -12.49422 -12.26301 -12.15411 -12.03855 -11.86360 -11.63622 -11.59339 -11.33126 -11.12129 -11.04418 -10.98299 -9.83157 -9.60287 -9.36633 -8.76304 -6.55449 -0.19179 0.57753 1.00523 1.39499 1.47768 1.51510 2.18158 2.32348 2.65318 3.01841 3.47222 3.59187 3.73341 3.92401 4.05428 4.26724 4.32197 4.33304 4.39564 4.50040 4.61717 4.69607 4.72018 4.80351 4.91289 4.99844 5.01271 5.05376 5.11918 5.17134 5.19109 5.21272 5.27150 5.31315 5.37684 5.42086 5.51772 5.54472 5.57013 5.72123 5.78007 5.83351 5.91565 6.02199 6.17968 6.55781 6.76215 6.86556 8.20814 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.010818 B = 0.008481 C = 0.006708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2587.629926 B = 3300.574898 C = 4172.954564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.115 4.115 3 C -0.134 4.134 4 C 0.151 3.849 5 H 0.076 0.924 6 C -0.115 4.115 7 C -0.123 4.123 8 C 0.114 3.886 9 N -0.997 5.997 10 S 2.726 3.274 11 O -1.004 7.004 12 O -1.009 7.009 13 C -0.781 4.781 14 C -0.012 4.012 15 C -0.249 4.249 16 C -0.075 4.075 17 C -0.182 4.182 18 C 0.181 3.819 19 C -0.496 4.496 20 H 0.100 0.900 21 C 0.062 3.938 22 N -0.791 5.791 23 Si 0.949 3.051 24 H -0.244 1.244 25 H -0.261 1.261 26 H -0.270 1.270 27 H 0.064 0.936 28 H 0.032 0.968 29 H 0.056 0.944 30 H 0.044 0.956 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.105 0.895 36 H 0.097 0.903 37 H 0.083 0.917 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.112 0.888 41 H 0.122 0.878 42 H 0.119 0.881 43 H 0.106 0.894 44 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.605 8.386 5.820 10.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.135 4.135 3 C -0.192 4.192 4 C 0.045 3.955 5 H 0.094 0.906 6 C -0.154 4.154 7 C -0.162 4.162 8 C -0.011 4.011 9 N -0.834 5.834 10 S 2.826 3.174 11 O -0.995 6.995 12 O -1.000 7.000 13 C -0.876 4.876 14 C -0.032 4.032 15 C -0.269 4.269 16 C -0.093 4.093 17 C -0.202 4.202 18 C 0.176 3.824 19 C -0.524 4.524 20 H 0.118 0.882 21 C -0.158 4.158 22 N -0.414 5.414 23 Si 0.769 3.231 24 H -0.167 1.167 25 H -0.185 1.185 26 H -0.195 1.195 27 H 0.083 0.917 28 H 0.051 0.949 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.123 0.877 36 H 0.116 0.884 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.130 0.870 41 H 0.140 0.860 42 H 0.137 0.863 43 H 0.124 0.876 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.137 7.869 5.828 10.283 hybrid contribution -1.213 -0.564 -0.462 1.415 sum 1.923 7.305 5.366 9.266 Atomic orbital electron populations 1.21791 0.94743 1.02827 1.00217 1.21553 0.96530 0.98157 0.97279 1.21736 1.01144 0.93471 1.02854 1.21569 0.97763 0.79475 0.96659 0.90642 1.22771 1.02632 0.97336 0.92634 1.22812 1.02457 0.94219 0.96696 1.22232 0.94898 0.99784 0.84143 1.58259 1.64162 1.24042 1.36967 1.00020 0.72778 0.72000 0.72621 1.93415 1.87495 1.42162 1.76421 1.93395 1.45285 1.83921 1.77412 1.30069 1.14144 1.30388 1.12965 1.20437 0.98223 0.92533 0.91972 1.20796 0.93353 1.13357 0.99376 1.21172 0.96126 0.95858 0.96168 1.21416 0.99354 1.06465 0.92929 1.17149 0.88962 0.83365 0.92881 1.20385 1.00922 1.31760 0.99354 0.88247 1.26430 0.95075 0.93153 1.01142 1.69810 1.10118 1.22952 1.38549 0.85725 0.78913 0.79519 0.78906 1.16702 1.18480 1.19469 0.91678 0.94893 0.92533 0.93765 0.91939 0.92623 0.90415 0.89690 0.87650 0.88420 0.89875 0.91691 0.92096 0.86958 0.85999 0.86318 0.87590 0.89422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.86 8.71 71.98 0.63 -4.24 16 2 C -0.12 -3.65 2.72 -10.80 -0.03 -3.68 16 3 C -0.13 -3.14 9.02 71.98 0.65 -2.49 16 4 C 0.15 4.63 2.65 45.34 0.12 4.75 16 5 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 6 C -0.12 -2.60 5.15 31.78 0.16 -2.44 16 7 C -0.12 -2.93 7.08 31.99 0.23 -2.71 16 8 C 0.11 3.95 5.56 86.86 0.48 4.44 16 9 N -1.00 -37.72 2.53 -484.31 -1.23 -38.95 16 10 S 2.73 125.61 4.90 -56.49 -0.28 125.33 16 11 O -1.00 -51.40 14.90 -128.00 -1.91 -53.31 16 12 O -1.01 -47.86 16.34 -128.00 -2.09 -49.95 16 13 C -0.78 -37.67 5.13 22.73 0.12 -37.55 16 14 C -0.01 -0.54 9.34 22.22 0.21 -0.33 16 15 C -0.25 -10.60 10.05 22.46 0.23 -10.37 16 16 C -0.07 -3.27 10.02 22.22 0.22 -3.04 16 17 C -0.18 -8.91 8.66 22.73 0.20 -8.71 16 18 C 0.18 9.11 4.64 -21.29 -0.10 9.01 16 19 C -0.50 -24.46 6.10 23.46 0.14 -24.32 16 20 H 0.10 5.11 5.10 -2.91 -0.01 5.10 16 21 C 0.06 2.80 4.68 85.26 0.40 3.19 16 22 N -0.79 -35.84 11.27 21.83 0.25 -35.60 16 23 Si 0.95 34.83 29.58 68.60 2.03 36.86 16 24 H -0.24 -8.41 7.11 99.48 0.71 -7.71 16 25 H -0.26 -8.85 7.11 99.48 0.71 -8.14 16 26 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 27 H 0.06 1.96 6.25 -2.39 -0.01 1.95 16 28 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.06 2.39 5.50 -2.39 -0.01 2.37 16 30 H 0.04 1.65 7.53 -2.38 -0.02 1.63 16 31 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 33 H 0.08 1.47 7.10 -2.39 -0.02 1.45 16 34 H 0.08 1.90 5.58 -2.39 -0.01 1.88 16 35 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 38 H 0.06 2.46 6.56 -2.38 -0.02 2.44 16 39 H 0.06 2.21 7.78 -2.39 -0.02 2.20 16 40 H 0.11 4.83 7.32 -2.91 -0.02 4.81 16 41 H 0.12 4.41 8.06 -2.91 -0.02 4.38 16 42 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 43 H 0.11 5.29 6.59 -2.91 -0.02 5.27 16 44 H 0.29 12.08 8.30 -92.71 -0.77 11.31 16 Total: -1.00 -60.50 347.09 1.43 -59.07 By element: Atomic # 1 Polarization: 34.02 SS G_CDS: 1.00 Total: 35.03 kcal Atomic # 6 Polarization: -82.15 SS G_CDS: 3.65 Total: -78.49 kcal Atomic # 7 Polarization: -73.57 SS G_CDS: -0.98 Total: -74.55 kcal Atomic # 8 Polarization: -99.26 SS G_CDS: -4.00 Total: -103.26 kcal Atomic # 14 Polarization: 34.83 SS G_CDS: 2.03 Total: 36.86 kcal Atomic # 16 Polarization: 125.61 SS G_CDS: -0.28 Total: 125.33 kcal Total: -60.50 1.43 -59.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601319453.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.923 kcal (2) G-P(sol) polarization free energy of solvation -60.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds