Wall clock time and date at job start Tue Mar 31 2020 13:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47494 * 2 1 4 4 C 1.52998 * 112.84704 * 301.55328 * 3 2 1 5 5 N 1.46503 * 109.47074 * 302.85291 * 4 3 2 6 6 S 1.65599 * 119.99758 * 165.39977 * 5 4 3 7 7 O 1.42097 * 106.40329 * 313.00899 * 6 5 4 8 8 O 1.42103 * 106.40018 * 180.09022 * 6 5 4 9 9 C 1.76194 * 107.22086 * 66.55505 * 6 5 4 10 10 C 1.37641 * 120.13273 * 112.16802 * 9 6 5 11 11 C 1.38614 * 120.24632 * 180.31908 * 10 9 6 12 12 C 1.38651 * 120.50785 * 359.67842 * 11 10 9 13 13 C 1.37598 * 120.24500 * 359.97438 * 12 11 10 14 14 C 1.40701 * 120.12565 * 291.86897 * 9 6 5 15 15 C 1.41395 * 120.24322 * 359.97438 * 14 9 6 16 16 H 1.08001 * 119.99883 * 331.50671 * 15 14 9 17 17 C 1.39944 * 120.00139 * 151.51068 * 15 14 9 18 18 N 1.30832 * 120.00006 * 338.79442 * 17 15 14 19 19 Si 1.86797 * 120.00234 * 158.79240 * 17 15 14 20 20 H 1.48500 * 109.47365 * 270.00107 * 19 17 15 21 21 H 1.48500 * 109.47219 * 30.00091 * 19 17 15 22 22 H 1.48500 * 109.47093 * 149.99778 * 19 17 15 23 23 C 1.53780 * 113.61256 * 72.74490 * 3 2 1 24 24 C 1.53951 * 87.02141 * 89.23203 * 23 3 2 25 25 C 1.53776 * 113.61739 * 170.35172 * 3 2 1 26 26 H 1.09000 * 109.47408 * 185.69797 * 1 2 3 27 27 H 1.09004 * 109.47019 * 305.70496 * 1 2 3 28 28 H 1.09006 * 109.47210 * 65.69733 * 1 2 3 29 29 H 1.09001 * 109.47162 * 240.00001 * 2 1 3 30 30 H 1.09000 * 109.47326 * 120.00127 * 2 1 3 31 31 H 1.09008 * 109.46997 * 182.85999 * 4 3 2 32 32 H 1.08999 * 109.47777 * 62.85524 * 4 3 2 33 33 H 0.96992 * 119.99936 * 345.39790 * 5 4 3 34 34 H 1.08003 * 119.87454 * 0.02562 * 10 9 6 35 35 H 1.08003 * 119.74474 * 179.69388 * 11 10 9 36 36 H 1.07994 * 119.88173 * 180.02562 * 12 11 10 37 37 H 1.08005 * 120.13249 * 180.02562 * 13 12 11 38 38 H 0.97006 * 119.99496 * 355.29182 * 18 17 15 39 39 H 1.09000 * 113.61706 * 203.75199 * 23 3 2 40 40 H 1.09000 * 113.61692 * 334.65151 * 23 3 2 41 41 H 1.09008 * 113.53713 * 270.81680 * 24 23 3 42 42 H 1.08998 * 113.74820 * 139.94219 * 24 23 3 43 43 H 1.09001 * 113.61345 * 25.35079 * 25 3 2 44 44 H 1.09001 * 113.61692 * 156.16787 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5425 2.2485 -1.2015 5 7 1.9422 1.5759 -2.4401 6 16 1.2464 2.0090 -3.8791 7 8 -0.1542 2.0656 -3.6466 8 8 1.8364 1.1839 -4.8744 9 6 1.7595 3.6574 -4.2313 10 6 2.6005 3.9076 -5.2917 11 6 3.0108 5.2027 -5.5670 12 6 2.5752 6.2605 -4.7837 13 6 1.7285 6.0347 -3.7228 14 6 1.3060 4.7238 -3.4334 15 6 0.4363 4.4797 -2.3455 16 1 -0.2356 3.6345 -2.3705 17 6 0.4462 5.3332 -1.2365 18 7 1.4922 6.0815 -0.9963 19 14 -1.0339 5.4041 -0.0992 20 1 -1.9779 6.4450 -0.5796 21 1 -1.7150 4.0845 -0.0902 22 1 -0.5857 5.7391 1.2763 23 6 1.8514 2.1626 1.3456 24 6 3.2367 1.6187 1.7395 25 6 3.5550 1.5602 0.2361 26 1 -0.3634 -1.0226 0.1020 27 1 -0.3633 0.5998 0.8345 28 1 -0.3634 0.4230 -0.9366 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.9776 3.2477 -1.1740 32 1 0.4558 2.3242 -1.1635 33 1 2.6143 0.8769 -2.4173 34 1 2.9457 3.0912 -5.9088 35 1 3.6748 5.3892 -6.3981 36 1 2.9009 7.2656 -5.0074 37 1 1.3899 6.8602 -3.1141 38 1 2.2867 5.9954 -1.5462 39 1 1.8173 3.2485 1.2588 40 1 1.0360 1.7592 1.9462 41 1 3.2003 0.6391 2.2165 42 1 3.8494 2.3340 2.2881 43 1 4.1131 0.6712 -0.0578 44 1 3.9879 2.4805 -0.1560 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601367507.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:04 Heat of formation + Delta-G solvation = -58.582378 kcal Electronic energy + Delta-G solvation = -27322.969064 eV Core-core repulsion = 23752.661268 eV Total energy + Delta-G solvation = -3570.307796 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.63877 -37.90698 -36.34141 -34.90839 -34.41327 -33.82446 -31.87495 -30.23987 -29.46256 -26.86531 -25.64641 -25.35860 -23.56968 -21.87782 -21.53358 -21.21693 -18.72729 -18.18401 -17.86869 -16.95525 -16.24312 -15.61871 -15.07290 -15.02127 -14.83095 -14.41324 -14.07996 -13.80059 -13.66693 -13.43777 -13.20569 -12.71241 -12.41717 -12.21923 -12.15452 -11.88795 -11.57258 -11.52690 -11.28150 -11.25086 -11.18038 -11.14166 -11.00836 -10.93631 -10.86026 -10.55773 -10.50984 -10.09432 -9.92823 -9.85533 -9.54960 -9.33513 -9.31373 -8.58842 -8.24777 -7.83040 -7.47801 -4.87500 1.53041 2.20690 2.61620 3.04931 3.13891 3.25182 3.80887 3.99132 4.29809 4.65895 4.77563 4.82113 4.89538 5.03417 5.14630 5.31827 5.46799 5.51344 5.66560 5.76317 5.84515 5.90326 6.01938 6.03566 6.05142 6.08445 6.12410 6.15546 6.21618 6.27078 6.28539 6.51330 6.53863 6.60983 6.66846 6.71682 6.86815 6.89557 7.13319 7.27074 7.36199 7.54839 7.65718 7.70551 7.79336 7.95778 8.36705 8.55183 9.73997 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.010892 B = 0.007405 C = 0.005726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2570.147662 B = 3780.513822 C = 4888.431820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.095 4.095 3 C -0.092 4.092 4 C 0.141 3.859 5 N -1.117 6.117 6 S 2.707 3.293 7 O -0.974 6.974 8 O -1.001 7.001 9 C -0.780 4.780 10 C 0.013 3.987 11 C -0.262 4.262 12 C -0.056 4.056 13 C -0.212 4.212 14 C 0.167 3.833 15 C -0.525 4.525 16 H 0.120 0.880 17 C 0.045 3.955 18 N -0.779 5.779 19 Si 1.053 2.947 20 H -0.271 1.271 21 H -0.264 1.264 22 H -0.271 1.271 23 C -0.129 4.129 24 C -0.140 4.140 25 C -0.131 4.131 26 H 0.049 0.951 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.404 0.596 34 H 0.109 0.891 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.112 0.888 38 H 0.303 0.697 39 H 0.088 0.912 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.930 -6.013 6.371 8.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.133 4.133 3 C -0.094 4.094 4 C 0.016 3.984 5 N -0.874 5.874 6 S 2.804 3.196 7 O -0.964 6.964 8 O -0.992 6.992 9 C -0.875 4.875 10 C -0.007 4.007 11 C -0.282 4.282 12 C -0.075 4.075 13 C -0.232 4.232 14 C 0.162 3.838 15 C -0.552 4.552 16 H 0.138 0.862 17 C -0.180 4.180 18 N -0.401 5.401 19 Si 0.875 3.125 20 H -0.196 1.196 21 H -0.189 1.189 22 H -0.196 1.196 23 C -0.168 4.168 24 C -0.178 4.178 25 C -0.168 4.168 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.237 0.763 34 H 0.127 0.873 35 H 0.115 0.885 36 H 0.113 0.887 37 H 0.130 0.870 38 H 0.117 0.883 39 H 0.107 0.893 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.662 -5.639 7.242 9.202 hybrid contribution 1.478 -0.080 -1.429 2.058 sum 2.141 -5.719 5.812 8.430 Atomic orbital electron populations 1.21824 0.95613 1.01066 1.02975 1.21235 0.96194 0.94468 1.01358 1.22172 0.96005 0.95776 0.95419 1.21717 1.00760 0.95065 0.80871 1.55444 1.57968 1.50948 1.23050 1.00807 0.73563 0.73890 0.71326 1.93466 1.30488 1.87581 1.84860 1.93448 1.79244 1.68381 1.58144 1.29833 1.23067 1.20162 1.14451 1.20317 0.91104 0.96404 0.92910 1.20467 1.09866 0.93334 1.04568 1.20841 0.95285 0.97067 0.94323 1.21385 1.04376 0.96852 1.00567 1.17052 0.87215 0.90097 0.89470 1.21633 1.18188 1.14253 1.01129 0.86245 1.27066 1.01821 0.90639 0.98450 1.70472 1.03386 1.30185 1.36074 0.83794 0.74208 0.78684 0.75796 1.19592 1.18873 1.19600 1.22991 0.97031 1.00980 0.95751 1.22814 0.97607 1.00774 0.96576 1.22972 0.95718 1.02093 0.96064 0.93231 0.92573 0.91564 0.91853 0.92288 0.89826 0.89952 0.76334 0.87318 0.88534 0.88656 0.87040 0.88263 0.89303 0.91441 0.90696 0.91809 0.91934 0.89781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 9.38 37.16 0.35 -1.73 16 2 C -0.10 -1.20 5.08 -26.73 -0.14 -1.34 16 3 C -0.09 -1.30 0.52 -153.70 -0.08 -1.38 16 4 C 0.14 2.49 3.26 -4.04 -0.01 2.48 16 5 N -1.12 -19.78 5.61 -10.61 -0.06 -19.84 16 6 S 2.71 58.16 5.44 -107.50 -0.58 57.58 16 7 O -0.97 -23.17 14.94 -57.17 -0.85 -24.02 16 8 O -1.00 -22.67 16.97 -57.17 -0.97 -23.64 16 9 C -0.78 -18.24 5.97 -38.87 -0.23 -18.47 16 10 C 0.01 0.28 9.54 -39.66 -0.38 -0.10 16 11 C -0.26 -5.62 10.05 -39.29 -0.39 -6.02 16 12 C -0.06 -1.22 10.02 -39.66 -0.40 -1.62 16 13 C -0.21 -5.01 7.84 -38.87 -0.30 -5.32 16 14 C 0.17 4.05 5.23 -106.82 -0.56 3.49 16 15 C -0.53 -12.35 4.78 -37.74 -0.18 -12.53 16 16 H 0.12 2.88 4.09 -52.49 -0.21 2.67 16 17 C 0.04 0.99 4.44 -17.34 -0.08 0.92 16 18 N -0.78 -17.87 12.41 55.55 0.69 -17.18 16 19 Si 1.05 19.75 29.98 -169.99 -5.10 14.66 16 20 H -0.27 -5.05 7.11 56.52 0.40 -4.64 16 21 H -0.26 -4.76 7.11 56.52 0.40 -4.35 16 22 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 23 C -0.13 -1.74 7.06 -25.83 -0.18 -1.92 16 24 C -0.14 -1.65 7.74 -25.83 -0.20 -1.85 16 25 C -0.13 -1.71 7.23 -25.92 -0.19 -1.89 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.71 7.10 -51.93 -0.37 0.34 16 28 H 0.07 1.02 7.08 -51.93 -0.37 0.65 16 29 H 0.06 0.79 7.35 -51.93 -0.38 0.41 16 30 H 0.06 0.65 7.30 -51.93 -0.38 0.27 16 31 H 0.08 1.64 6.07 -51.92 -0.32 1.33 16 32 H 0.08 1.57 5.14 -51.93 -0.27 1.30 16 33 H 0.40 6.11 8.00 -34.47 -0.28 5.84 16 34 H 0.11 2.27 7.33 -52.48 -0.38 1.88 16 35 H 0.10 1.81 8.06 -52.48 -0.42 1.38 16 36 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 37 H 0.11 2.65 6.52 -52.48 -0.34 2.31 16 38 H 0.30 7.14 6.38 -40.82 -0.26 6.88 16 39 H 0.09 1.33 8.10 -51.93 -0.42 0.91 16 40 H 0.07 0.83 7.20 -51.93 -0.37 0.46 16 41 H 0.07 0.78 7.60 -51.92 -0.39 0.39 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 44 H 0.08 1.20 8.08 -51.93 -0.42 0.78 16 LS Contribution 348.65 15.07 5.25 5.25 Total: -1.00 -27.36 348.65 -10.67 -38.02 By element: Atomic # 1 Polarization: 22.53 SS G_CDS: -6.07 Total: 16.45 kcal Atomic # 6 Polarization: -44.32 SS G_CDS: -2.97 Total: -47.29 kcal Atomic # 7 Polarization: -37.64 SS G_CDS: 0.63 Total: -37.01 kcal Atomic # 8 Polarization: -45.84 SS G_CDS: -1.82 Total: -47.66 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.10 Total: 14.66 kcal Atomic # 16 Polarization: 58.16 SS G_CDS: -0.58 Total: 57.58 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -27.36 -10.67 -38.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601367507.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.558 kcal (2) G-P(sol) polarization free energy of solvation -27.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds