Wall clock time and date at job start Tue Mar 31 2020 13:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47494 * 2 1 4 4 C 1.52998 * 112.84704 * 301.55328 * 3 2 1 5 5 N 1.46503 * 109.47074 * 302.85291 * 4 3 2 6 6 S 1.65599 * 119.99758 * 165.39977 * 5 4 3 7 7 O 1.42097 * 106.40329 * 313.00899 * 6 5 4 8 8 O 1.42103 * 106.40018 * 180.09022 * 6 5 4 9 9 C 1.76194 * 107.22086 * 66.55505 * 6 5 4 10 10 C 1.37641 * 120.13273 * 112.16802 * 9 6 5 11 11 C 1.38614 * 120.24632 * 180.31908 * 10 9 6 12 12 C 1.38651 * 120.50785 * 359.67842 * 11 10 9 13 13 C 1.37598 * 120.24500 * 359.97438 * 12 11 10 14 14 C 1.40701 * 120.12565 * 291.86897 * 9 6 5 15 15 C 1.41395 * 120.24322 * 359.97438 * 14 9 6 16 16 H 1.08001 * 119.99883 * 331.50671 * 15 14 9 17 17 C 1.39944 * 120.00139 * 151.51068 * 15 14 9 18 18 N 1.30832 * 120.00006 * 338.79442 * 17 15 14 19 19 Si 1.86797 * 120.00234 * 158.79240 * 17 15 14 20 20 H 1.48500 * 109.47365 * 270.00107 * 19 17 15 21 21 H 1.48500 * 109.47219 * 30.00091 * 19 17 15 22 22 H 1.48500 * 109.47093 * 149.99778 * 19 17 15 23 23 C 1.53780 * 113.61256 * 72.74490 * 3 2 1 24 24 C 1.53951 * 87.02141 * 89.23203 * 23 3 2 25 25 C 1.53776 * 113.61739 * 170.35172 * 3 2 1 26 26 H 1.09000 * 109.47408 * 185.69797 * 1 2 3 27 27 H 1.09004 * 109.47019 * 305.70496 * 1 2 3 28 28 H 1.09006 * 109.47210 * 65.69733 * 1 2 3 29 29 H 1.09001 * 109.47162 * 240.00001 * 2 1 3 30 30 H 1.09000 * 109.47326 * 120.00127 * 2 1 3 31 31 H 1.09008 * 109.46997 * 182.85999 * 4 3 2 32 32 H 1.08999 * 109.47777 * 62.85524 * 4 3 2 33 33 H 0.96992 * 119.99936 * 345.39790 * 5 4 3 34 34 H 1.08003 * 119.87454 * 0.02562 * 10 9 6 35 35 H 1.08003 * 119.74474 * 179.69388 * 11 10 9 36 36 H 1.07994 * 119.88173 * 180.02562 * 12 11 10 37 37 H 1.08005 * 120.13249 * 180.02562 * 13 12 11 38 38 H 0.97006 * 119.99496 * 355.29182 * 18 17 15 39 39 H 1.09000 * 113.61706 * 203.75199 * 23 3 2 40 40 H 1.09000 * 113.61692 * 334.65151 * 23 3 2 41 41 H 1.09008 * 113.53713 * 270.81680 * 24 23 3 42 42 H 1.08998 * 113.74820 * 139.94219 * 24 23 3 43 43 H 1.09001 * 113.61345 * 25.35079 * 25 3 2 44 44 H 1.09001 * 113.61692 * 156.16787 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5425 2.2485 -1.2015 5 7 1.9422 1.5759 -2.4401 6 16 1.2464 2.0090 -3.8791 7 8 -0.1542 2.0656 -3.6466 8 8 1.8364 1.1839 -4.8744 9 6 1.7595 3.6574 -4.2313 10 6 2.6005 3.9076 -5.2917 11 6 3.0108 5.2027 -5.5670 12 6 2.5752 6.2605 -4.7837 13 6 1.7285 6.0347 -3.7228 14 6 1.3060 4.7238 -3.4334 15 6 0.4363 4.4797 -2.3455 16 1 -0.2356 3.6345 -2.3705 17 6 0.4462 5.3332 -1.2365 18 7 1.4922 6.0815 -0.9963 19 14 -1.0339 5.4041 -0.0992 20 1 -1.9779 6.4450 -0.5796 21 1 -1.7150 4.0845 -0.0902 22 1 -0.5857 5.7391 1.2763 23 6 1.8514 2.1626 1.3456 24 6 3.2367 1.6187 1.7395 25 6 3.5550 1.5602 0.2361 26 1 -0.3634 -1.0226 0.1020 27 1 -0.3633 0.5998 0.8345 28 1 -0.3634 0.4230 -0.9366 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.9776 3.2477 -1.1740 32 1 0.4558 2.3242 -1.1635 33 1 2.6143 0.8769 -2.4173 34 1 2.9457 3.0912 -5.9088 35 1 3.6748 5.3892 -6.3981 36 1 2.9009 7.2656 -5.0074 37 1 1.3899 6.8602 -3.1141 38 1 2.2867 5.9954 -1.5462 39 1 1.8173 3.2485 1.2588 40 1 1.0360 1.7592 1.9462 41 1 3.2003 0.6391 2.2165 42 1 3.8494 2.3340 2.2881 43 1 4.1131 0.6712 -0.0578 44 1 3.9879 2.4805 -0.1560 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601367507.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:04 Heat of formation + Delta-G solvation = -74.012958 kcal Electronic energy + Delta-G solvation = -27323.638184 eV Core-core repulsion = 23752.661268 eV Total energy + Delta-G solvation = -3570.976916 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.76034 -39.65294 -38.13907 -36.72643 -36.06883 -35.32835 -32.95121 -31.99525 -31.22764 -28.19130 -27.18377 -26.59359 -24.73130 -23.60937 -22.97712 -22.61708 -20.43823 -19.89736 -19.09736 -18.52734 -17.88989 -17.12074 -16.65075 -16.42737 -16.23041 -15.89988 -15.64674 -15.33819 -15.00231 -14.79797 -14.73228 -14.36591 -13.98119 -13.51583 -13.41076 -13.25892 -13.17023 -13.04072 -13.02951 -12.87508 -12.75367 -12.73410 -12.26094 -12.21920 -12.13197 -11.97653 -11.89849 -11.61770 -11.18461 -11.04464 -11.00860 -10.91576 -10.74825 -10.15482 -10.00864 -9.62081 -9.26535 -6.67982 -0.18296 0.42422 0.85998 1.49159 1.59027 1.77308 2.23934 2.35735 2.58055 2.92732 3.36741 3.62906 3.72864 3.74344 3.89166 4.02780 4.20710 4.22050 4.32230 4.50769 4.57389 4.61359 4.68073 4.75522 4.82362 4.88042 4.94856 4.98182 5.04990 5.08832 5.11181 5.14667 5.19188 5.31564 5.35121 5.36902 5.49879 5.53671 5.57682 5.59588 5.72294 5.77723 5.86037 6.00220 6.17126 6.32483 6.58564 6.76868 7.93978 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.010892 B = 0.007405 C = 0.005726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2570.147662 B = 3780.513822 C = 4888.431820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.092 4.092 3 C -0.093 4.093 4 C 0.146 3.854 5 N -1.101 6.101 6 S 2.724 3.276 7 O -1.000 7.000 8 O -1.013 7.013 9 C -0.800 4.800 10 C -0.003 4.003 11 C -0.262 4.262 12 C -0.055 4.055 13 C -0.235 4.235 14 C 0.144 3.856 15 C -0.535 4.535 16 H 0.109 0.891 17 C 0.026 3.974 18 N -0.788 5.788 19 Si 1.081 2.919 20 H -0.267 1.267 21 H -0.256 1.256 22 H -0.257 1.257 23 C -0.135 4.135 24 C -0.125 4.125 25 C -0.132 4.132 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.036 0.964 29 H 0.064 0.936 30 H 0.086 0.914 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.418 0.582 34 H 0.122 0.878 35 H 0.128 0.872 36 H 0.125 0.875 37 H 0.102 0.898 38 H 0.292 0.708 39 H 0.066 0.934 40 H 0.081 0.919 41 H 0.099 0.901 42 H 0.067 0.933 43 H 0.080 0.920 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.667 -7.065 7.494 10.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.130 4.130 3 C -0.095 4.095 4 C 0.020 3.980 5 N -0.862 5.862 6 S 2.820 3.180 7 O -0.990 6.990 8 O -1.004 7.004 9 C -0.894 4.894 10 C -0.023 4.023 11 C -0.282 4.282 12 C -0.074 4.074 13 C -0.255 4.255 14 C 0.140 3.860 15 C -0.562 4.562 16 H 0.126 0.874 17 C -0.195 4.195 18 N -0.409 5.409 19 Si 0.899 3.101 20 H -0.192 1.192 21 H -0.180 1.180 22 H -0.181 1.181 23 C -0.173 4.173 24 C -0.162 4.162 25 C -0.169 4.169 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.055 0.945 29 H 0.083 0.917 30 H 0.104 0.896 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.253 0.747 34 H 0.140 0.860 35 H 0.146 0.854 36 H 0.143 0.857 37 H 0.120 0.880 38 H 0.106 0.894 39 H 0.084 0.916 40 H 0.100 0.900 41 H 0.117 0.883 42 H 0.086 0.914 43 H 0.098 0.902 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.424 -6.687 8.343 10.786 hybrid contribution 1.298 0.251 -1.859 2.281 sum 2.722 -6.436 6.484 9.532 Atomic orbital electron populations 1.21838 0.96203 1.02083 1.01555 1.21264 0.95658 0.93296 1.02761 1.22232 0.96939 0.96420 0.93883 1.21589 0.99565 0.94782 0.82032 1.55066 1.58074 1.51019 1.22009 1.00202 0.72980 0.73167 0.71687 1.93430 1.32375 1.87759 1.85410 1.93418 1.79300 1.68429 1.59218 1.30143 1.23354 1.20925 1.14979 1.20640 0.91175 0.97562 0.92929 1.20870 1.09586 0.92724 1.05028 1.21194 0.94130 0.98788 0.93278 1.21432 1.05914 0.96422 1.01725 1.17331 0.87808 0.90769 0.90137 1.21606 1.18350 1.14544 1.01683 0.87354 1.27969 1.02939 0.89732 0.98895 1.70543 1.03408 1.30863 1.36107 0.83474 0.72162 0.79208 0.75294 1.19170 1.17978 1.18063 1.23000 0.98953 0.99720 0.95605 1.22783 0.95899 1.01955 0.95589 1.22946 0.94784 1.01911 0.97308 0.91350 0.92148 0.94521 0.91690 0.89557 0.92299 0.91769 0.74674 0.86011 0.85360 0.85673 0.87974 0.89424 0.91559 0.90031 0.88265 0.91419 0.90181 0.91816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.98 9.38 71.98 0.67 -3.31 16 2 C -0.09 -2.12 5.08 30.59 0.16 -1.97 16 3 C -0.09 -2.52 0.52 -51.66 -0.03 -2.55 16 4 C 0.15 5.23 3.26 86.38 0.28 5.51 16 5 N -1.10 -39.30 5.61 -187.48 -1.05 -40.35 16 6 S 2.72 118.93 5.44 -56.49 -0.31 118.62 16 7 O -1.00 -48.92 14.94 -128.00 -1.91 -50.83 16 8 O -1.01 -45.77 16.97 -128.00 -2.17 -47.94 16 9 C -0.80 -38.03 5.97 22.73 0.14 -37.89 16 10 C 0.00 -0.15 9.54 22.22 0.21 0.06 16 11 C -0.26 -10.88 10.05 22.46 0.23 -10.65 16 12 C -0.06 -2.35 10.02 22.22 0.22 -2.13 16 13 C -0.24 -11.31 7.84 22.73 0.18 -11.13 16 14 C 0.14 7.20 5.23 -21.29 -0.11 7.09 16 15 C -0.54 -26.00 4.78 23.46 0.11 -25.89 16 16 H 0.11 5.45 4.09 -2.91 -0.01 5.44 16 17 C 0.03 1.18 4.44 85.26 0.38 1.56 16 18 N -0.79 -37.02 12.41 21.83 0.27 -36.75 16 19 Si 1.08 39.88 29.98 68.60 2.06 41.93 16 20 H -0.27 -9.65 7.11 99.48 0.71 -8.94 16 21 H -0.26 -9.01 7.11 99.48 0.71 -8.30 16 22 H -0.26 -8.83 7.11 99.48 0.71 -8.12 16 23 C -0.13 -3.44 7.06 31.18 0.22 -3.22 16 24 C -0.13 -2.61 7.74 31.18 0.24 -2.36 16 25 C -0.13 -3.22 7.23 31.12 0.22 -3.00 16 26 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.06 1.43 7.10 -2.38 -0.02 1.41 16 28 H 0.04 1.12 7.08 -2.38 -0.02 1.10 16 29 H 0.06 1.47 7.35 -2.39 -0.02 1.45 16 30 H 0.09 1.56 7.30 -2.39 -0.02 1.54 16 31 H 0.06 2.41 6.07 -2.38 -0.01 2.40 16 32 H 0.06 2.54 5.14 -2.39 -0.01 2.52 16 33 H 0.42 12.41 8.00 -96.75 -0.77 11.63 16 34 H 0.12 4.99 7.33 -2.91 -0.02 4.97 16 35 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16 36 H 0.13 4.48 8.06 -2.91 -0.02 4.46 16 37 H 0.10 5.00 6.52 -2.91 -0.02 4.98 16 38 H 0.29 14.29 6.38 -92.70 -0.59 13.69 16 39 H 0.07 1.99 8.10 -2.39 -0.02 1.97 16 40 H 0.08 1.83 7.20 -2.39 -0.02 1.81 16 41 H 0.10 1.63 7.60 -2.38 -0.02 1.61 16 42 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.08 1.67 8.10 -2.39 -0.02 1.65 16 44 H 0.06 1.82 8.08 -2.39 -0.02 1.80 16 Total: -1.00 -59.37 348.65 0.44 -58.94 By element: Atomic # 1 Polarization: 45.84 SS G_CDS: 0.43 Total: 46.26 kcal Atomic # 6 Polarization: -93.01 SS G_CDS: 3.12 Total: -89.88 kcal Atomic # 7 Polarization: -76.32 SS G_CDS: -0.78 Total: -77.10 kcal Atomic # 8 Polarization: -94.69 SS G_CDS: -4.08 Total: -98.77 kcal Atomic # 14 Polarization: 39.88 SS G_CDS: 2.06 Total: 41.93 kcal Atomic # 16 Polarization: 118.93 SS G_CDS: -0.31 Total: 118.62 kcal Total: -59.37 0.44 -58.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601367507.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.077 kcal (2) G-P(sol) polarization free energy of solvation -59.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds