Wall clock time and date at job start Tue Mar 31 2020 13:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47161 * 2 1 4 4 C 1.53005 * 110.63977 * 298.30901 * 3 2 1 5 5 C 1.55164 * 110.72582 * 61.44634 * 3 2 1 6 6 C 1.54910 * 101.58069 * 154.04479 * 5 3 2 7 7 N 1.47415 * 104.83413 * 322.99170 * 6 5 3 8 8 S 1.65604 * 125.64998 * 204.09450 * 7 6 5 9 9 O 1.42105 * 106.39890 * 345.43297 * 8 7 6 10 10 O 1.42100 * 106.40341 * 212.51711 * 8 7 6 11 11 C 1.76197 * 107.21968 * 98.97484 * 8 7 6 12 12 C 1.37634 * 120.12730 * 117.55509 * 11 8 7 13 13 C 1.38621 * 120.24724 * 179.97438 * 12 11 8 14 14 C 1.38656 * 120.50149 * 0.04576 * 13 12 11 15 15 C 1.37600 * 120.24749 * 359.67146 * 14 13 12 16 16 C 1.40703 * 120.12531 * 297.53268 * 11 8 7 17 17 C 1.41391 * 120.24432 * 0.02850 * 16 11 8 18 18 H 1.07992 * 119.99994 * 320.81444 * 17 16 11 19 19 C 1.39948 * 119.99762 * 140.82219 * 17 16 11 20 20 N 1.30824 * 119.99688 * 149.09443 * 19 17 16 21 21 Si 1.86797 * 120.00127 * 329.08572 * 19 17 16 22 22 H 1.48499 * 109.47284 * 269.57145 * 21 19 17 23 23 H 1.48498 * 109.46785 * 29.57276 * 21 19 17 24 24 H 1.48498 * 109.46779 * 149.57192 * 21 19 17 25 25 C 1.47019 * 108.70553 * 24.35794 * 7 6 5 26 26 H 1.09001 * 109.47029 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47472 * 300.00688 * 1 2 3 28 28 H 1.09003 * 109.46588 * 60.00748 * 1 2 3 29 29 H 1.08996 * 109.47906 * 239.99616 * 2 1 3 30 30 H 1.09003 * 109.46588 * 119.99252 * 2 1 3 31 31 H 1.09005 * 109.47411 * 181.69015 * 4 3 2 32 32 H 1.09005 * 109.46805 * 301.68562 * 4 3 2 33 33 H 1.08995 * 109.47364 * 61.68647 * 4 3 2 34 34 H 1.09000 * 110.99662 * 35.96947 * 5 3 2 35 35 H 1.08997 * 111.03856 * 272.14077 * 5 3 2 36 36 H 1.08999 * 110.35976 * 204.15316 * 6 5 3 37 37 H 1.08993 * 110.45671 * 81.88244 * 6 5 3 38 38 H 1.08004 * 119.87752 * 359.97438 * 12 11 8 39 39 H 1.07998 * 119.74787 * 180.02562 * 13 12 11 40 40 H 1.07997 * 119.87391 * 179.97438 * 14 13 12 41 41 H 1.07994 * 120.12810 * 180.29464 * 15 14 13 42 42 H 0.97005 * 119.99853 * 180.02562 * 20 19 17 43 43 H 1.09004 * 109.88544 * 118.12565 * 25 7 6 44 44 H 1.08998 * 109.88617 * 239.29391 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5796 2.1773 -1.2606 5 6 1.5691 2.1914 1.2747 6 6 2.6678 3.2733 1.4235 7 7 3.9152 2.6034 1.0132 8 16 5.4435 3.0418 1.4762 9 8 5.3358 4.3446 2.0334 10 8 6.2981 2.7319 0.3840 11 6 5.9153 1.9737 2.7957 12 6 6.9930 1.1301 2.6500 13 6 7.3667 0.2891 3.6867 14 6 6.6608 0.2866 4.8801 15 6 5.5836 1.1258 5.0501 16 6 5.1921 1.9803 4.0027 17 6 4.0832 2.8426 4.1637 18 1 4.1171 3.8459 3.7655 19 6 2.9419 2.3960 4.8393 20 7 2.2081 3.2430 5.5144 21 14 2.4662 0.5907 4.7770 22 1 1.5603 0.3570 3.6238 23 1 3.6885 -0.2382 4.6223 24 1 1.7715 0.2183 6.0356 25 6 3.5781 1.4855 0.1198 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3632 0.5137 -0.8901 29 1 1.8935 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 1.9778 3.1920 -1.2556 32 1 1.9428 1.6489 -2.1422 33 1 0.4905 2.2144 -1.2822 34 1 1.5574 1.5251 2.1373 35 1 0.5905 2.6466 1.1221 36 1 2.7374 3.6030 2.4601 37 1 2.4593 4.1203 0.7700 38 1 7.5496 1.1232 1.7245 39 1 8.2139 -0.3693 3.5638 40 1 6.9605 -0.3731 5.6810 41 1 5.0381 1.1256 5.9821 42 1 1.4172 2.9334 5.9830 43 1 4.0239 1.6478 -0.8616 44 1 3.9413 0.5494 0.5440 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601370486.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:19 Heat of formation + Delta-G solvation = -82.924177 kcal Electronic energy + Delta-G solvation = -27444.097329 eV Core-core repulsion = 23872.733994 eV Total energy + Delta-G solvation = -3571.363336 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.29211 -39.52499 -38.13751 -36.74561 -35.70896 -35.14553 -32.44014 -31.73948 -30.76871 -30.20504 -27.46955 -27.16521 -24.08483 -23.67058 -23.21554 -22.90401 -19.91460 -19.69808 -19.49364 -18.62926 -17.91069 -17.17049 -16.94688 -16.31090 -15.83009 -15.63852 -15.46563 -15.28558 -15.08300 -14.93694 -14.60212 -14.07104 -13.93415 -13.69011 -13.68566 -13.51583 -13.13514 -13.10166 -13.02700 -12.92053 -12.79287 -12.70973 -12.62826 -12.54426 -12.21008 -12.11547 -11.80197 -11.70612 -11.39206 -11.30343 -11.22649 -11.10620 -10.91475 -9.96198 -9.72882 -9.44808 -9.00637 -6.64450 -0.27161 0.36695 0.80114 1.28299 1.35382 1.44269 2.13948 2.24635 2.46435 2.93456 3.28228 3.39091 3.69229 3.85560 3.91056 4.22171 4.31824 4.34638 4.41595 4.43526 4.53122 4.61064 4.67016 4.72061 4.76842 4.84638 4.90106 4.94780 4.95535 5.06811 5.18796 5.20009 5.22547 5.24152 5.27608 5.30138 5.39752 5.41256 5.51598 5.55431 5.65622 5.71339 5.78328 5.86574 6.10569 6.33306 6.58236 6.73697 8.03808 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011374 B = 0.007704 C = 0.006114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.113950 B = 3633.511205 C = 4578.298236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.109 4.109 3 C -0.063 4.063 4 C -0.133 4.133 5 C -0.120 4.120 6 C 0.112 3.888 7 N -1.000 6.000 8 S 2.730 3.270 9 O -1.002 7.002 10 O -1.004 7.004 11 C -0.783 4.783 12 C -0.009 4.009 13 C -0.243 4.243 14 C -0.054 4.054 15 C -0.225 4.225 16 C 0.152 3.848 17 C -0.503 4.503 18 H 0.093 0.907 19 C 0.088 3.912 20 N -0.801 5.801 21 Si 0.904 3.096 22 H -0.231 1.231 23 H -0.239 1.239 24 H -0.269 1.269 25 C 0.121 3.879 26 H 0.060 0.940 27 H 0.047 0.953 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.097 0.903 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.126 0.874 39 H 0.137 0.863 40 H 0.135 0.865 41 H 0.102 0.898 42 H 0.299 0.701 43 H 0.076 0.924 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.073 -8.441 -8.563 13.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.147 4.147 3 C -0.065 4.065 4 C -0.191 4.191 5 C -0.159 4.159 6 C -0.013 4.013 7 N -0.838 5.838 8 S 2.829 3.171 9 O -0.993 6.993 10 O -0.995 6.995 11 C -0.876 4.876 12 C -0.029 4.029 13 C -0.262 4.262 14 C -0.072 4.072 15 C -0.244 4.244 16 C 0.148 3.852 17 C -0.530 4.530 18 H 0.111 0.889 19 C -0.134 4.134 20 N -0.423 5.423 21 Si 0.724 3.276 22 H -0.155 1.155 23 H -0.162 1.162 24 H -0.193 1.193 25 C -0.004 4.004 26 H 0.079 0.921 27 H 0.066 0.934 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.115 0.885 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.144 0.856 39 H 0.155 0.845 40 H 0.153 0.847 41 H 0.121 0.879 42 H 0.110 0.890 43 H 0.094 0.906 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.723 -7.569 -8.786 12.932 hybrid contribution -0.044 -0.616 1.191 1.341 sum -5.767 -8.185 -7.595 12.567 Atomic orbital electron populations 1.21796 0.94443 1.02082 1.02309 1.21527 0.97148 0.93791 1.02231 1.21646 0.92027 0.96758 0.96020 1.21845 1.02131 0.99702 0.95373 1.22994 0.98062 0.97043 0.97782 1.22242 0.82692 0.95446 1.00887 1.58150 1.21411 1.43558 1.60705 1.00011 0.71171 0.73189 0.72726 1.93453 1.86311 1.39429 1.80069 1.93414 1.65909 1.86204 1.53959 1.30342 1.15202 1.26290 1.15799 1.20714 0.92507 0.91260 0.98380 1.20998 1.04763 1.05444 0.95031 1.21307 0.93462 0.95247 0.97194 1.21449 1.00951 1.03614 0.98425 1.17201 0.90309 0.88849 0.88847 1.19840 0.99209 1.00891 1.33063 0.88907 1.26510 0.95045 1.02702 0.89190 1.69838 1.13907 1.40142 1.18414 0.86348 0.81062 0.79951 0.80217 1.15453 1.16202 1.19348 1.22024 0.96997 0.88244 0.93145 0.92068 0.93417 0.91027 0.90103 0.93244 0.93224 0.91117 0.90506 0.91842 0.88486 0.90859 0.91546 0.85645 0.84547 0.84676 0.87945 0.88969 0.90614 0.92283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.41 71.98 0.68 -1.97 16 2 C -0.11 -2.32 4.92 30.59 0.15 -2.17 16 3 C -0.06 -1.57 0.64 -50.99 -0.03 -1.61 16 4 C -0.13 -2.65 8.02 71.98 0.58 -2.08 16 5 C -0.12 -3.56 4.95 31.99 0.16 -3.40 16 6 C 0.11 4.11 6.22 86.86 0.54 4.65 16 7 N -1.00 -38.64 3.54 -506.44 -1.79 -40.43 16 8 S 2.73 124.95 5.26 -56.49 -0.30 124.65 16 9 O -1.00 -52.53 15.43 -128.00 -1.97 -54.50 16 10 O -1.00 -46.28 16.68 -128.00 -2.14 -48.42 16 11 C -0.78 -36.87 5.96 22.73 0.14 -36.74 16 12 C -0.01 -0.38 9.53 22.22 0.21 -0.16 16 13 C -0.24 -9.28 10.05 22.46 0.23 -9.05 16 14 C -0.05 -2.11 10.02 22.22 0.22 -1.88 16 15 C -0.22 -10.20 7.02 22.73 0.16 -10.04 16 16 C 0.15 7.51 4.73 -21.29 -0.10 7.41 16 17 C -0.50 -25.85 6.32 23.46 0.15 -25.70 16 18 H 0.09 5.34 5.17 -2.91 -0.02 5.33 16 19 C 0.09 4.17 4.84 85.26 0.41 4.58 16 20 N -0.80 -38.88 13.93 21.83 0.30 -38.57 16 21 Si 0.90 35.77 25.95 68.60 1.78 37.55 16 22 H -0.23 -8.20 5.61 99.48 0.56 -7.64 16 23 H -0.24 -9.83 5.74 99.48 0.57 -9.25 16 24 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 25 C 0.12 3.77 6.27 86.73 0.54 4.32 16 26 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.05 0.94 7.30 -2.39 -0.02 0.92 16 28 H 0.07 1.05 6.61 -2.39 -0.02 1.04 16 29 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.05 1.21 8.11 -2.39 -0.02 1.19 16 31 H 0.05 1.09 7.54 -2.38 -0.02 1.07 16 32 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 33 H 0.08 1.25 6.68 -2.39 -0.02 1.24 16 34 H 0.06 2.11 5.44 -2.39 -0.01 2.09 16 35 H 0.10 2.39 8.00 -2.39 -0.02 2.37 16 36 H 0.07 3.21 4.90 -2.39 -0.01 3.20 16 37 H 0.07 2.21 7.78 -2.39 -0.02 2.19 16 38 H 0.13 4.88 7.33 -2.91 -0.02 4.86 16 39 H 0.14 4.19 8.06 -2.91 -0.02 4.17 16 40 H 0.14 4.23 8.06 -2.91 -0.02 4.20 16 41 H 0.10 4.54 6.92 -2.91 -0.02 4.52 16 42 H 0.30 12.90 8.30 -92.70 -0.77 12.13 16 43 H 0.08 2.18 7.84 -2.39 -0.02 2.16 16 44 H 0.06 1.84 7.80 -2.39 -0.02 1.82 16 Total: -1.00 -62.51 344.38 0.63 -61.87 By element: Atomic # 1 Polarization: 30.98 SS G_CDS: 0.72 Total: 31.70 kcal Atomic # 6 Polarization: -77.88 SS G_CDS: 4.03 Total: -73.85 kcal Atomic # 7 Polarization: -77.52 SS G_CDS: -1.49 Total: -79.00 kcal Atomic # 8 Polarization: -98.81 SS G_CDS: -4.11 Total: -102.92 kcal Atomic # 14 Polarization: 35.77 SS G_CDS: 1.78 Total: 37.55 kcal Atomic # 16 Polarization: 124.95 SS G_CDS: -0.30 Total: 124.65 kcal Total: -62.51 0.63 -61.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601370486.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.053 kcal (2) G-P(sol) polarization free energy of solvation -62.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds