Wall clock time and date at job start Tue Mar 31 2020 13:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.46878 * 2 1 4 4 C 1.53000 * 110.64260 * 59.30273 * 3 2 1 5 5 C 1.55152 * 110.72268 * 296.15936 * 3 2 1 6 6 C 1.54913 * 101.58214 * 205.95863 * 5 3 2 7 7 N 1.47423 * 104.83294 * 37.01037 * 6 5 3 8 8 S 1.65602 * 125.65004 * 155.83128 * 7 6 5 9 9 O 1.42106 * 106.40068 * 203.56264 * 8 7 6 10 10 O 1.42091 * 106.40299 * 336.48496 * 8 7 6 11 11 C 1.76197 * 107.21716 * 90.02437 * 8 7 6 12 12 C 1.37650 * 120.12782 * 114.72744 * 11 8 7 13 13 C 1.38608 * 120.24578 * 179.72238 * 12 11 8 14 14 C 1.38657 * 120.50520 * 0.55094 * 13 12 11 15 15 C 1.37600 * 120.24428 * 359.72572 * 14 13 12 16 16 C 1.40693 * 120.12905 * 294.99684 * 11 8 7 17 17 C 1.41392 * 120.24599 * 359.97438 * 16 11 8 18 18 H 1.08001 * 119.99653 * 332.61931 * 17 16 11 19 19 C 1.39946 * 120.00722 * 152.61275 * 17 16 11 20 20 N 1.30823 * 119.99582 * 345.05626 * 19 17 16 21 21 Si 1.86793 * 120.00529 * 165.04971 * 19 17 16 22 22 H 1.48503 * 109.46841 * 60.00455 * 21 19 17 23 23 H 1.48496 * 109.47474 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47324 * 300.00668 * 21 19 17 25 25 C 1.47491 * 108.76073 * 335.89220 * 7 6 5 26 26 H 1.09002 * 109.47413 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47243 * 299.99757 * 1 2 3 28 28 H 1.09000 * 109.47695 * 59.99458 * 1 2 3 29 29 H 1.09000 * 109.46765 * 240.00204 * 2 1 3 30 30 H 1.08998 * 109.47184 * 120.00522 * 2 1 3 31 31 H 1.09000 * 109.46962 * 60.69914 * 4 3 2 32 32 H 1.08999 * 109.47051 * 300.69937 * 4 3 2 33 33 H 1.09004 * 109.47475 * 180.69335 * 4 3 2 34 34 H 1.08997 * 111.00952 * 324.03139 * 5 3 2 35 35 H 1.08996 * 111.00807 * 87.85261 * 5 3 2 36 36 H 1.09005 * 110.36817 * 155.84994 * 6 5 3 37 37 H 1.08997 * 110.36757 * 278.17355 * 6 5 3 38 38 H 1.07995 * 119.87239 * 359.97337 * 12 11 8 39 39 H 1.08007 * 119.75023 * 180.25806 * 13 12 11 40 40 H 1.07994 * 119.87957 * 179.74638 * 14 13 12 41 41 H 1.08001 * 120.12302 * 180.02562 * 15 14 13 42 42 H 0.97004 * 120.00330 * 179.97438 * 20 19 17 43 43 H 1.09000 * 110.03382 * 241.66613 * 25 7 6 44 44 H 1.08993 * 109.96899 * 120.34645 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5306 2.1946 1.2311 5 6 1.6197 2.1733 -1.3025 6 6 2.7237 3.2534 -1.4231 7 7 3.9539 2.5896 -0.9548 8 16 5.4993 3.0208 -1.3648 9 8 6.3013 1.8621 -1.1812 10 8 5.4076 3.7146 -2.6014 11 6 6.0458 4.1981 -0.1731 12 6 7.0854 3.8909 0.6751 13 6 7.5211 4.8173 1.6096 14 6 6.9094 6.0576 1.7092 15 6 5.8646 6.3841 0.8753 16 6 5.4175 5.4536 -0.0811 17 6 4.3453 5.7783 -0.9437 18 1 4.2764 5.3160 -1.9173 19 6 3.3732 6.6987 -0.5359 20 7 3.2804 7.0368 0.7245 21 14 2.2082 7.4447 -1.7912 22 1 1.4271 6.3641 -2.4450 23 1 1.2810 8.3833 -1.1096 24 1 2.9907 8.1801 -2.8170 25 6 3.5817 1.4765 -0.0615 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.8940 1.7028 2.1335 32 1 0.4406 2.1951 1.2314 33 1 1.8944 3.2219 1.2057 34 1 1.6418 1.4952 -2.1556 35 1 0.6359 2.6299 -1.1944 36 1 2.8342 3.5687 -2.4607 37 1 2.4889 4.1082 -0.7889 38 1 7.5660 2.9260 0.6095 39 1 8.3403 4.5694 2.2684 40 1 7.2543 6.7702 2.4437 41 1 5.3898 7.3509 0.9543 42 1 2.6068 7.6750 1.0072 43 1 3.9888 1.6456 0.9354 44 1 3.9574 0.5355 -0.4629 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601370487.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:23 Heat of formation + Delta-G solvation = -71.594402 kcal Electronic energy + Delta-G solvation = -27110.833251 eV Core-core repulsion = 23539.961211 eV Total energy + Delta-G solvation = -3570.872040 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.05436 -37.58548 -36.28708 -34.86482 -34.14937 -33.81442 -30.24774 -29.65755 -29.52795 -28.98848 -26.36054 -25.53089 -23.05192 -21.95919 -21.58010 -21.13656 -18.68768 -18.05334 -17.64156 -16.93570 -16.05340 -15.43919 -15.31911 -14.76012 -14.50617 -14.37030 -14.21781 -13.64415 -13.36557 -13.12838 -12.79424 -12.73300 -12.42686 -12.40645 -11.96923 -11.85811 -11.76888 -11.68526 -11.52251 -11.27692 -11.22876 -11.13809 -11.11988 -10.96690 -10.75191 -10.60974 -10.48651 -10.28486 -10.22263 -10.13983 -9.88836 -9.44042 -9.21603 -8.25154 -7.99656 -7.62153 -7.09535 -4.78084 1.50437 2.35290 2.71989 2.93039 2.97421 3.10243 3.73041 3.94106 4.35418 4.60256 4.76253 4.86901 4.93742 5.24785 5.33671 5.40802 5.42751 5.49612 5.67257 5.73594 5.82602 5.91071 5.97821 6.01262 6.05192 6.06010 6.14698 6.22271 6.24649 6.27737 6.32230 6.40283 6.46284 6.57099 6.68699 6.76741 6.83431 6.92419 7.03977 7.19153 7.34093 7.51808 7.68123 7.81196 7.93641 8.33942 8.49079 8.65471 9.83733 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.010795 B = 0.006923 C = 0.005373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2593.256144 B = 4043.710317 C = 5210.345822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.109 4.109 3 C -0.069 4.069 4 C -0.140 4.140 5 C -0.122 4.122 6 C 0.122 3.878 7 N -1.004 6.004 8 S 2.719 3.281 9 O -0.995 6.995 10 O -0.972 6.972 11 C -0.778 4.778 12 C -0.002 4.002 13 C -0.251 4.251 14 C -0.077 4.077 15 C -0.160 4.160 16 C 0.192 3.808 17 C -0.471 4.471 18 H 0.112 0.888 19 C 0.083 3.917 20 N -0.774 5.774 21 Si 0.904 3.096 22 H -0.255 1.255 23 H -0.276 1.276 24 H -0.258 1.258 25 C 0.136 3.864 26 H 0.049 0.951 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.107 0.893 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.122 0.878 42 H 0.287 0.713 43 H 0.062 0.938 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.497 -6.694 0.670 10.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.147 4.147 3 C -0.071 4.071 4 C -0.197 4.197 5 C -0.161 4.161 6 C -0.003 4.003 7 N -0.841 5.841 8 S 2.819 3.181 9 O -0.986 6.986 10 O -0.963 6.963 11 C -0.873 4.873 12 C -0.022 4.022 13 C -0.271 4.271 14 C -0.095 4.095 15 C -0.179 4.179 16 C 0.187 3.813 17 C -0.499 4.499 18 H 0.130 0.870 19 C -0.139 4.139 20 N -0.397 5.397 21 Si 0.727 3.273 22 H -0.178 1.178 23 H -0.200 1.200 24 H -0.182 1.182 25 C 0.010 3.990 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.125 0.875 39 H 0.112 0.888 40 H 0.111 0.889 41 H 0.140 0.860 42 H 0.098 0.902 43 H 0.081 0.919 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.105 -6.878 0.070 9.889 hybrid contribution -0.467 0.998 0.439 1.186 sum -7.572 -5.880 0.509 9.600 Atomic orbital electron populations 1.21816 0.95867 1.01092 1.02109 1.21515 0.95890 0.95246 1.02005 1.21599 0.94207 0.95222 0.96045 1.21871 1.00496 1.01241 0.96074 1.22917 0.98592 0.97816 0.96797 1.22149 0.82589 0.95329 1.00210 1.58551 1.21842 1.41933 1.61741 1.00488 0.70538 0.72866 0.74168 1.93431 1.67436 1.50054 1.87690 1.93465 1.85684 1.74786 1.42372 1.29886 1.17070 1.13392 1.26949 1.20234 0.92939 0.97093 0.91902 1.20480 1.05308 0.96703 1.04608 1.20890 0.95688 0.95610 0.97357 1.21479 0.97273 1.00226 0.98955 1.16988 0.87885 0.87518 0.88885 1.20424 1.05267 1.20970 1.03225 0.87005 1.25983 0.98077 0.94216 0.95633 1.69808 1.29278 1.24610 1.15984 0.86394 0.79631 0.80048 0.81239 1.17844 1.20043 1.18162 1.21742 0.94262 0.89232 0.93802 0.93225 0.92443 0.92584 0.91820 0.91884 0.92752 0.92558 0.91341 0.91145 0.90547 0.90776 0.89889 0.87537 0.88774 0.88892 0.86003 0.90155 0.91923 0.91814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.38 37.16 0.35 -1.07 16 2 C -0.11 -1.17 4.89 -26.73 -0.13 -1.30 16 3 C -0.07 -0.92 0.63 -152.67 -0.10 -1.02 16 4 C -0.14 -1.84 8.06 37.16 0.30 -1.54 16 5 C -0.12 -1.67 5.06 -24.58 -0.12 -1.79 16 6 C 0.12 2.16 5.07 -2.53 -0.01 2.15 16 7 N -1.00 -19.28 3.68 -111.06 -0.41 -19.69 16 8 S 2.72 61.53 5.30 -107.50 -0.57 60.96 16 9 O -1.00 -23.34 16.55 -57.17 -0.95 -24.29 16 10 O -0.97 -23.94 15.00 -57.17 -0.86 -24.80 16 11 C -0.78 -18.92 5.96 -38.87 -0.23 -19.15 16 12 C 0.00 -0.04 9.54 -39.66 -0.38 -0.42 16 13 C -0.25 -5.57 10.05 -39.29 -0.39 -5.97 16 14 C -0.08 -1.73 10.02 -39.66 -0.40 -2.13 16 15 C -0.16 -3.94 8.67 -38.87 -0.34 -4.28 16 16 C 0.19 4.87 5.55 -106.83 -0.59 4.27 16 17 C -0.47 -11.49 6.11 -37.74 -0.23 -11.72 16 18 H 0.11 2.76 4.61 -52.49 -0.24 2.51 16 19 C 0.08 1.86 4.86 -17.34 -0.08 1.78 16 20 N -0.77 -17.74 10.99 55.55 0.61 -17.13 16 21 Si 0.90 17.18 29.58 -169.99 -5.03 12.15 16 22 H -0.25 -4.61 7.11 56.52 0.40 -4.21 16 23 H -0.28 -5.03 7.11 56.52 0.40 -4.63 16 24 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 25 C 0.14 2.20 6.20 -2.80 -0.02 2.18 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.53 6.50 -51.93 -0.34 0.19 16 28 H 0.06 0.52 7.38 -51.93 -0.38 0.14 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.64 6.50 -51.93 -0.34 0.30 16 33 H 0.07 1.08 7.47 -51.93 -0.39 0.69 16 34 H 0.07 0.89 8.05 -51.93 -0.42 0.47 16 35 H 0.08 0.93 8.01 -51.93 -0.42 0.51 16 36 H 0.07 1.33 7.68 -51.93 -0.40 0.93 16 37 H 0.08 1.58 6.19 -51.93 -0.32 1.26 16 38 H 0.11 2.30 7.32 -52.49 -0.38 1.92 16 39 H 0.09 1.82 8.06 -52.48 -0.42 1.40 16 40 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 41 H 0.12 3.02 6.28 -52.49 -0.33 2.69 16 42 H 0.29 5.98 8.30 -40.82 -0.34 5.64 16 43 H 0.06 1.03 7.84 -51.93 -0.41 0.62 16 44 H 0.06 0.98 7.82 -51.93 -0.41 0.57 16 LS Contribution 351.09 15.07 5.29 5.29 Total: -1.00 -28.27 351.09 -10.73 -39.00 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -6.44 Total: 8.51 kcal Atomic # 6 Polarization: -37.62 SS G_CDS: -2.38 Total: -40.00 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: 0.20 Total: -36.83 kcal Atomic # 8 Polarization: -47.28 SS G_CDS: -1.80 Total: -49.09 kcal Atomic # 14 Polarization: 17.18 SS G_CDS: -5.03 Total: 12.15 kcal Atomic # 16 Polarization: 61.53 SS G_CDS: -0.57 Total: 60.96 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -28.27 -10.73 -39.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601370487.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.596 kcal (2) G-P(sol) polarization free energy of solvation -28.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds