Wall clock time and date at job start Tue Mar 31 2020 13:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.46878 * 2 1 4 4 C 1.53000 * 110.64260 * 59.30273 * 3 2 1 5 5 C 1.55152 * 110.72268 * 296.15936 * 3 2 1 6 6 C 1.54913 * 101.58214 * 205.95863 * 5 3 2 7 7 N 1.47423 * 104.83294 * 37.01037 * 6 5 3 8 8 S 1.65602 * 125.65004 * 155.83128 * 7 6 5 9 9 O 1.42106 * 106.40068 * 203.56264 * 8 7 6 10 10 O 1.42091 * 106.40299 * 336.48496 * 8 7 6 11 11 C 1.76197 * 107.21716 * 90.02437 * 8 7 6 12 12 C 1.37650 * 120.12782 * 114.72744 * 11 8 7 13 13 C 1.38608 * 120.24578 * 179.72238 * 12 11 8 14 14 C 1.38657 * 120.50520 * 0.55094 * 13 12 11 15 15 C 1.37600 * 120.24428 * 359.72572 * 14 13 12 16 16 C 1.40693 * 120.12905 * 294.99684 * 11 8 7 17 17 C 1.41392 * 120.24599 * 359.97438 * 16 11 8 18 18 H 1.08001 * 119.99653 * 332.61931 * 17 16 11 19 19 C 1.39946 * 120.00722 * 152.61275 * 17 16 11 20 20 N 1.30823 * 119.99582 * 345.05626 * 19 17 16 21 21 Si 1.86793 * 120.00529 * 165.04971 * 19 17 16 22 22 H 1.48503 * 109.46841 * 60.00455 * 21 19 17 23 23 H 1.48496 * 109.47474 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47324 * 300.00668 * 21 19 17 25 25 C 1.47491 * 108.76073 * 335.89220 * 7 6 5 26 26 H 1.09002 * 109.47413 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47243 * 299.99757 * 1 2 3 28 28 H 1.09000 * 109.47695 * 59.99458 * 1 2 3 29 29 H 1.09000 * 109.46765 * 240.00204 * 2 1 3 30 30 H 1.08998 * 109.47184 * 120.00522 * 2 1 3 31 31 H 1.09000 * 109.46962 * 60.69914 * 4 3 2 32 32 H 1.08999 * 109.47051 * 300.69937 * 4 3 2 33 33 H 1.09004 * 109.47475 * 180.69335 * 4 3 2 34 34 H 1.08997 * 111.00952 * 324.03139 * 5 3 2 35 35 H 1.08996 * 111.00807 * 87.85261 * 5 3 2 36 36 H 1.09005 * 110.36817 * 155.84994 * 6 5 3 37 37 H 1.08997 * 110.36757 * 278.17355 * 6 5 3 38 38 H 1.07995 * 119.87239 * 359.97337 * 12 11 8 39 39 H 1.08007 * 119.75023 * 180.25806 * 13 12 11 40 40 H 1.07994 * 119.87957 * 179.74638 * 14 13 12 41 41 H 1.08001 * 120.12302 * 180.02562 * 15 14 13 42 42 H 0.97004 * 120.00330 * 179.97438 * 20 19 17 43 43 H 1.09000 * 110.03382 * 241.66613 * 25 7 6 44 44 H 1.08993 * 109.96899 * 120.34645 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5306 2.1946 1.2311 5 6 1.6197 2.1733 -1.3025 6 6 2.7237 3.2534 -1.4231 7 7 3.9539 2.5896 -0.9548 8 16 5.4993 3.0208 -1.3648 9 8 6.3013 1.8621 -1.1812 10 8 5.4076 3.7146 -2.6014 11 6 6.0458 4.1981 -0.1731 12 6 7.0854 3.8909 0.6751 13 6 7.5211 4.8173 1.6096 14 6 6.9094 6.0576 1.7092 15 6 5.8646 6.3841 0.8753 16 6 5.4175 5.4536 -0.0811 17 6 4.3453 5.7783 -0.9437 18 1 4.2764 5.3160 -1.9173 19 6 3.3732 6.6987 -0.5359 20 7 3.2804 7.0368 0.7245 21 14 2.2082 7.4447 -1.7912 22 1 1.4271 6.3641 -2.4450 23 1 1.2810 8.3833 -1.1096 24 1 2.9907 8.1801 -2.8170 25 6 3.5817 1.4765 -0.0615 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.8940 1.7028 2.1335 32 1 0.4406 2.1951 1.2314 33 1 1.8944 3.2219 1.2057 34 1 1.6418 1.4952 -2.1556 35 1 0.6359 2.6299 -1.1944 36 1 2.8342 3.5687 -2.4607 37 1 2.4889 4.1082 -0.7889 38 1 7.5660 2.9260 0.6095 39 1 8.3403 4.5694 2.2684 40 1 7.2543 6.7702 2.4437 41 1 5.3898 7.3509 0.9543 42 1 2.6068 7.6750 1.0072 43 1 3.9888 1.6456 0.9354 44 1 3.9574 0.5355 -0.4629 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601370487.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:22 Heat of formation + Delta-G solvation = -87.431180 kcal Electronic energy + Delta-G solvation = -27111.519985 eV Core-core repulsion = 23539.961211 eV Total energy + Delta-G solvation = -3571.558774 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.25342 -39.38377 -38.13866 -36.73341 -35.74969 -35.14935 -32.04192 -31.36978 -30.73268 -30.17219 -27.56084 -27.28463 -24.02479 -23.44297 -23.24905 -22.93103 -19.93462 -19.66972 -19.38675 -18.56971 -17.78809 -17.13555 -16.83748 -16.23327 -16.00512 -15.61513 -15.32340 -15.17738 -15.03054 -14.68009 -14.46060 -14.06236 -13.80441 -13.61174 -13.52799 -13.38172 -13.07697 -13.02688 -12.98055 -12.91376 -12.83765 -12.74310 -12.62631 -12.46327 -12.15975 -12.15157 -11.75437 -11.66598 -11.40367 -11.28448 -11.18908 -11.13746 -11.00855 -9.89679 -9.69505 -9.46343 -8.82263 -6.61433 -0.23540 0.53076 0.96287 1.36881 1.46620 1.50908 2.14785 2.28988 2.59801 2.98474 3.36636 3.51460 3.69328 3.85899 3.91512 4.29251 4.32565 4.39752 4.46266 4.47402 4.56889 4.67593 4.68653 4.74470 4.84881 4.88737 4.96196 4.99036 5.02548 5.15192 5.18232 5.22018 5.23868 5.28233 5.30406 5.31551 5.42211 5.52271 5.54369 5.65071 5.68398 5.72855 5.84951 5.98774 6.12117 6.50061 6.68478 6.82526 8.13737 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.010795 B = 0.006923 C = 0.005373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2593.256144 B = 4043.710317 C = 5210.345822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.105 4.105 3 C -0.061 4.061 4 C -0.136 4.136 5 C -0.112 4.112 6 C 0.115 3.885 7 N -1.004 6.004 8 S 2.732 3.268 9 O -1.008 7.008 10 O -0.999 6.999 11 C -0.801 4.801 12 C -0.017 4.017 13 C -0.254 4.254 14 C -0.076 4.076 15 C -0.186 4.186 16 C 0.165 3.835 17 C -0.488 4.488 18 H 0.103 0.897 19 C 0.056 3.944 20 N -0.792 5.792 21 Si 0.955 3.045 22 H -0.240 1.240 23 H -0.258 1.258 24 H -0.267 1.267 25 C 0.123 3.877 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.035 0.965 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.118 0.882 39 H 0.126 0.874 40 H 0.122 0.878 41 H 0.114 0.886 42 H 0.297 0.703 43 H 0.054 0.946 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.362 -7.619 1.013 12.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.142 4.142 3 C -0.063 4.063 4 C -0.193 4.193 5 C -0.151 4.151 6 C -0.010 4.010 7 N -0.842 5.842 8 S 2.832 3.168 9 O -0.999 6.999 10 O -0.989 6.989 11 C -0.895 4.895 12 C -0.036 4.036 13 C -0.274 4.274 14 C -0.095 4.095 15 C -0.206 4.206 16 C 0.161 3.839 17 C -0.515 4.515 18 H 0.121 0.879 19 C -0.165 4.165 20 N -0.415 5.415 21 Si 0.774 3.226 22 H -0.163 1.163 23 H -0.182 1.182 24 H -0.191 1.191 25 C -0.002 4.002 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.054 0.946 34 H 0.104 0.896 35 H 0.116 0.884 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.136 0.864 39 H 0.144 0.856 40 H 0.140 0.860 41 H 0.132 0.868 42 H 0.108 0.892 43 H 0.072 0.928 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.953 -7.804 0.437 11.885 hybrid contribution 0.156 1.274 0.402 1.345 sum -8.797 -6.531 0.839 10.989 Atomic orbital electron populations 1.21801 0.94350 1.02118 1.02360 1.21500 0.97095 0.93021 1.02622 1.21600 0.91721 0.97121 0.95822 1.21839 1.01857 0.99230 0.96381 1.22938 0.97883 0.96736 0.97579 1.22253 0.83283 0.96344 0.99124 1.58320 1.21056 1.42620 1.62238 0.99899 0.71205 0.72213 0.73499 1.93398 1.68544 1.50153 1.87775 1.93418 1.86418 1.75343 1.43768 1.30197 1.17874 1.13835 1.27566 1.20541 0.92919 0.97989 0.92195 1.20861 1.05782 0.96178 1.04568 1.21231 0.94736 0.96403 0.97142 1.21542 0.98685 1.00093 1.00302 1.17305 0.88734 0.88177 0.89715 1.20474 1.05954 1.22234 1.02874 0.87934 1.26603 0.98876 0.93850 0.97134 1.69817 1.29860 1.24661 1.17175 0.85634 0.78132 0.79824 0.78990 1.16299 1.18220 1.19122 1.22067 0.96855 0.88431 0.92811 0.91898 0.92206 0.92301 0.91420 0.91187 0.92194 0.90295 0.94604 0.89605 0.88390 0.91658 0.91683 0.86409 0.85610 0.85976 0.86836 0.89177 0.92796 0.90910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.38 71.98 0.68 -1.56 16 2 C -0.10 -1.94 4.89 30.59 0.15 -1.79 16 3 C -0.06 -1.51 0.63 -50.99 -0.03 -1.54 16 4 C -0.14 -3.39 8.06 71.98 0.58 -2.81 16 5 C -0.11 -2.85 5.06 31.99 0.16 -2.69 16 6 C 0.11 4.06 5.07 86.86 0.44 4.50 16 7 N -1.00 -39.04 3.68 -505.30 -1.86 -40.90 16 8 S 2.73 126.89 5.30 -56.49 -0.30 126.59 16 9 O -1.01 -47.96 16.55 -128.00 -2.12 -50.08 16 10 O -1.00 -50.82 15.00 -128.00 -1.92 -52.74 16 11 C -0.80 -40.04 5.96 22.73 0.14 -39.90 16 12 C -0.02 -0.78 9.54 22.22 0.21 -0.57 16 13 C -0.25 -11.10 10.05 22.46 0.23 -10.87 16 14 C -0.08 -3.44 10.02 22.22 0.22 -3.21 16 15 C -0.19 -9.41 8.67 22.73 0.20 -9.22 16 16 C 0.17 8.65 5.55 -21.29 -0.12 8.53 16 17 C -0.49 -24.54 6.11 23.46 0.14 -24.40 16 18 H 0.10 5.25 4.61 -2.91 -0.01 5.24 16 19 C 0.06 2.54 4.86 85.26 0.41 2.96 16 20 N -0.79 -36.73 10.99 21.83 0.24 -36.49 16 21 Si 0.95 34.79 29.58 68.60 2.03 36.82 16 22 H -0.24 -8.12 7.11 99.48 0.71 -7.41 16 23 H -0.26 -8.65 7.11 99.48 0.71 -7.94 16 24 H -0.27 -10.07 7.11 99.48 0.71 -9.37 16 25 C 0.12 3.96 6.20 86.64 0.54 4.49 16 26 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.06 0.88 6.50 -2.38 -0.02 0.86 16 28 H 0.06 0.86 7.38 -2.39 -0.02 0.84 16 29 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.08 1.59 6.50 -2.39 -0.02 1.58 16 33 H 0.03 1.12 7.47 -2.38 -0.02 1.10 16 34 H 0.09 1.93 8.05 -2.39 -0.02 1.91 16 35 H 0.10 2.08 8.01 -2.39 -0.02 2.07 16 36 H 0.06 2.38 7.68 -2.38 -0.02 2.36 16 37 H 0.06 2.53 6.19 -2.39 -0.01 2.51 16 38 H 0.12 5.11 7.32 -2.91 -0.02 5.09 16 39 H 0.13 4.60 8.06 -2.91 -0.02 4.58 16 40 H 0.12 4.64 8.06 -2.91 -0.02 4.62 16 41 H 0.11 5.79 6.28 -2.91 -0.02 5.77 16 42 H 0.30 12.32 8.30 -92.71 -0.77 11.55 16 43 H 0.05 1.79 7.84 -2.39 -0.02 1.78 16 44 H 0.07 2.18 7.82 -2.39 -0.02 2.16 16 Total: -1.00 -62.01 351.09 1.02 -60.99 By element: Atomic # 1 Polarization: 32.90 SS G_CDS: 1.00 Total: 33.90 kcal Atomic # 6 Polarization: -82.03 SS G_CDS: 3.94 Total: -78.09 kcal Atomic # 7 Polarization: -75.77 SS G_CDS: -1.62 Total: -77.39 kcal Atomic # 8 Polarization: -98.79 SS G_CDS: -4.04 Total: -102.83 kcal Atomic # 14 Polarization: 34.79 SS G_CDS: 2.03 Total: 36.82 kcal Atomic # 16 Polarization: 126.89 SS G_CDS: -0.30 Total: 126.59 kcal Total: -62.01 1.02 -60.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601370487.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.441 kcal (2) G-P(sol) polarization free energy of solvation -62.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds