Wall clock time and date at job start Tue Mar 31 2020 13:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47283 * 2 1 4 4 C 1.53002 * 113.41397 * 292.02457 * 3 2 1 5 5 C 1.53008 * 109.46922 * 307.64826 * 4 3 2 6 6 C 1.53504 * 114.20597 * 65.22216 * 3 2 1 7 7 N 1.47067 * 87.98315 * 139.65511 * 6 3 2 8 8 S 1.65599 * 136.05635 * 152.83948 * 7 6 3 9 9 O 1.42101 * 106.40413 * 203.53998 * 8 7 6 10 10 O 1.42102 * 106.40450 * 336.46560 * 8 7 6 11 11 C 1.76203 * 107.21692 * 90.00511 * 8 7 6 12 12 C 1.37637 * 120.12922 * 114.72596 * 11 8 7 13 13 C 1.38612 * 120.24487 * 179.70121 * 12 11 8 14 14 C 1.38658 * 120.50340 * 0.60107 * 13 12 11 15 15 C 1.37597 * 120.24850 * 359.67457 * 14 13 12 16 16 C 1.40700 * 120.12597 * 295.00156 * 11 8 7 17 17 C 1.41402 * 120.24310 * 0.02562 * 16 11 8 18 18 H 1.08004 * 119.99990 * 327.15165 * 17 16 11 19 19 C 1.39944 * 119.99951 * 147.15891 * 17 16 11 20 20 N 1.30828 * 119.99887 * 350.50803 * 19 17 16 21 21 Si 1.86794 * 120.00001 * 170.51188 * 19 17 16 22 22 H 1.48498 * 109.47207 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47279 * 120.00031 * 21 19 17 24 24 H 1.48502 * 109.46926 * 239.99553 * 21 19 17 25 25 C 1.47069 * 87.88600 * 333.10323 * 7 6 3 26 26 H 1.09005 * 109.47026 * 304.26217 * 1 2 3 27 27 H 1.08994 * 109.47157 * 64.26302 * 1 2 3 28 28 H 1.09003 * 109.46929 * 184.26552 * 1 2 3 29 29 H 1.09003 * 109.46925 * 239.99630 * 2 1 3 30 30 H 1.09003 * 109.46973 * 120.00340 * 2 1 3 31 31 H 1.09002 * 109.47056 * 67.64770 * 4 3 2 32 32 H 1.08995 * 109.47429 * 187.64798 * 4 3 2 33 33 H 1.09001 * 109.46744 * 306.17876 * 5 4 3 34 34 H 1.08999 * 109.46596 * 66.17551 * 5 4 3 35 35 H 1.08993 * 109.46793 * 186.17576 * 5 4 3 36 36 H 1.08997 * 113.46398 * 24.87351 * 6 3 2 37 37 H 1.09003 * 113.51825 * 254.44192 * 6 3 2 38 38 H 1.07996 * 119.87510 * 359.97438 * 12 11 8 39 39 H 1.08003 * 119.75058 * 180.30362 * 13 12 11 40 40 H 1.07997 * 119.87468 * 179.70236 * 14 13 12 41 41 H 1.07995 * 120.12982 * 180.02562 * 15 14 13 42 42 H 0.96991 * 119.99749 * 180.02562 * 20 19 17 43 43 H 1.09003 * 113.46686 * 141.67722 * 25 7 6 44 44 H 1.09003 * 113.46452 * 272.11371 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.7463 2.1912 -1.3016 5 6 2.2534 1.3692 -2.4883 6 6 1.6967 2.2315 1.2712 7 7 3.0448 2.8160 1.2101 8 16 3.7580 4.2236 1.7123 9 8 4.9010 4.4104 0.8889 10 8 2.7161 5.1833 1.8251 11 6 4.3607 3.9492 3.3451 12 6 5.7139 3.9744 3.5954 13 6 6.1903 3.7650 4.8801 14 6 5.3128 3.5159 5.9243 15 6 3.9563 3.4805 5.6963 16 6 3.4608 3.6978 4.3971 17 6 2.0689 3.6632 4.1507 18 1 1.6390 4.2990 3.3908 19 6 1.2482 2.8052 4.8915 20 7 1.7824 1.9057 5.6771 21 14 -0.6098 2.9442 4.7586 22 1 -0.9582 4.0328 3.8106 23 1 -1.1683 1.6598 4.2652 24 1 -1.1800 3.2509 6.0951 25 6 3.4793 1.6031 0.5008 26 1 -0.3633 0.5786 0.8494 27 1 -0.3633 0.4462 -0.9257 28 1 -0.3633 -1.0249 0.0764 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 0.6714 2.3440 -1.3982 32 1 2.2507 3.1573 -1.2868 33 1 3.3044 1.1230 -2.3371 34 1 1.6727 0.4502 -2.5682 35 1 2.1441 1.9489 -3.4048 36 1 1.5368 1.5992 2.1445 37 1 0.9001 2.9616 1.1280 38 1 6.4068 4.1624 2.7886 39 1 7.2535 3.7914 5.0684 40 1 5.6953 3.3494 6.9204 41 1 3.2745 3.2866 6.5111 42 1 1.2136 1.3108 6.1903 43 1 4.1955 1.7999 -0.2970 44 1 3.7992 0.8018 1.1670 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601421505.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:44 Heat of formation + Delta-G solvation = -39.525064 kcal Electronic energy + Delta-G solvation = -26928.620670 eV Core-core repulsion = 23359.139261 eV Total energy + Delta-G solvation = -3569.481409 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.92222 -37.59595 -36.24033 -34.86230 -33.98241 -33.78460 -31.31398 -30.22734 -29.57849 -27.15696 -25.82562 -25.39623 -23.24878 -22.91753 -21.59237 -21.14622 -18.25622 -17.85791 -17.60621 -16.88295 -16.09761 -15.48866 -15.40778 -14.99563 -14.92319 -14.36485 -13.97626 -13.48901 -13.43541 -13.15539 -12.94140 -12.82299 -12.73245 -12.32185 -11.99760 -11.90529 -11.84773 -11.54490 -11.45239 -11.27182 -11.22978 -11.18636 -11.13867 -11.12609 -10.92947 -10.57712 -10.51164 -10.46493 -9.96003 -9.87535 -9.79812 -9.48573 -9.26814 -8.39514 -7.99770 -7.57722 -7.04113 -4.78849 1.47754 2.32606 2.69140 2.95192 3.04114 3.05533 3.76498 3.86469 4.37913 4.47958 4.73965 4.94108 4.96753 5.13938 5.19701 5.34873 5.39804 5.47736 5.57655 5.69636 5.75986 5.83115 5.88624 5.96851 6.00927 6.05442 6.12633 6.15927 6.21294 6.22750 6.27410 6.30923 6.34352 6.44886 6.60562 6.65672 6.82002 6.97287 7.08335 7.13073 7.33170 7.49768 7.68894 7.78553 7.94138 8.35990 8.53039 8.64247 9.90495 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011178 B = 0.006971 C = 0.005078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.400453 B = 4015.476654 C = 5512.880918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.106 4.106 3 C -0.102 4.102 4 C -0.096 4.096 5 C -0.150 4.150 6 C 0.149 3.851 7 N -1.027 6.027 8 S 2.727 3.273 9 O -0.993 6.993 10 O -0.969 6.969 11 C -0.776 4.776 12 C -0.005 4.005 13 C -0.246 4.246 14 C -0.077 4.077 15 C -0.155 4.155 16 C 0.194 3.806 17 C -0.478 4.478 18 H 0.112 0.888 19 C 0.082 3.918 20 N -0.784 5.784 21 Si 0.901 3.099 22 H -0.250 1.250 23 H -0.267 1.267 24 H -0.269 1.269 25 C 0.138 3.862 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.050 0.950 36 H 0.086 0.914 37 H 0.072 0.928 38 H 0.107 0.893 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.121 0.879 42 H 0.285 0.715 43 H 0.073 0.927 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.105 -6.153 -8.322 10.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.144 4.144 3 C -0.104 4.104 4 C -0.134 4.134 5 C -0.207 4.207 6 C 0.023 3.977 7 N -0.863 5.863 8 S 2.827 3.173 9 O -0.984 6.984 10 O -0.960 6.960 11 C -0.870 4.870 12 C -0.025 4.025 13 C -0.266 4.266 14 C -0.096 4.096 15 C -0.174 4.174 16 C 0.190 3.810 17 C -0.506 4.506 18 H 0.130 0.870 19 C -0.138 4.138 20 N -0.408 5.408 21 Si 0.724 3.276 22 H -0.173 1.173 23 H -0.192 1.192 24 H -0.194 1.194 25 C 0.012 3.988 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.104 0.896 37 H 0.090 0.910 38 H 0.125 0.875 39 H 0.113 0.887 40 H 0.112 0.888 41 H 0.139 0.861 42 H 0.096 0.904 43 H 0.091 0.909 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.008 -5.340 -8.606 10.566 hybrid contribution -0.432 -0.455 1.153 1.313 sum -3.440 -5.795 -7.453 10.048 Atomic orbital electron populations 1.21751 0.95781 1.01287 1.02069 1.21434 0.96033 0.94693 1.02267 1.22380 0.96875 0.95634 0.95536 1.21208 1.01256 0.98622 0.92298 1.21782 1.01401 1.00012 0.97528 1.22484 0.84343 0.94853 0.96043 1.59985 1.21217 1.32625 1.72455 1.00303 0.71922 0.71444 0.73598 1.93434 1.51449 1.85004 1.68533 1.93473 1.57526 1.57252 1.87717 1.30078 1.01708 1.34723 1.20537 1.20259 0.93090 0.92855 0.96318 1.20515 0.97569 1.14715 0.93840 1.20916 0.94322 0.97374 0.97023 1.21472 0.93862 1.04640 0.97458 1.17045 0.91826 0.82414 0.89731 1.20433 0.91816 1.19612 1.18760 0.86985 1.25950 1.01848 0.93365 0.92640 1.69799 1.38441 1.13110 1.19415 0.86331 0.81265 0.80023 0.80008 1.17302 1.19178 1.19390 1.22425 0.95910 0.86249 0.94260 0.92362 0.92740 0.93088 0.91448 0.91475 0.91472 0.91613 0.92554 0.92564 0.93045 0.89579 0.90959 0.87483 0.88667 0.88785 0.86137 0.90398 0.90908 0.90407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.61 37.16 0.36 -1.22 16 2 C -0.11 -1.16 5.12 -26.73 -0.14 -1.30 16 3 C -0.10 -1.35 0.66 -154.13 -0.10 -1.45 16 4 C -0.10 -1.18 5.10 -26.73 -0.14 -1.32 16 5 C -0.15 -1.50 9.21 37.16 0.34 -1.16 16 6 C 0.15 2.51 6.27 -8.50 -0.05 2.45 16 7 N -1.03 -19.61 3.92 -125.26 -0.49 -20.10 16 8 S 2.73 62.25 5.63 -107.50 -0.60 61.65 16 9 O -0.99 -23.48 16.97 -57.17 -0.97 -24.45 16 10 O -0.97 -24.20 15.69 -57.17 -0.90 -25.10 16 11 C -0.78 -19.10 5.96 -38.87 -0.23 -19.33 16 12 C -0.01 -0.12 9.53 -39.66 -0.38 -0.50 16 13 C -0.25 -5.49 10.05 -39.29 -0.39 -5.89 16 14 C -0.08 -1.76 10.02 -39.66 -0.40 -2.16 16 15 C -0.15 -3.86 8.63 -38.87 -0.34 -4.20 16 16 C 0.19 5.00 5.50 -106.82 -0.59 4.42 16 17 C -0.48 -11.91 7.27 -37.74 -0.27 -12.18 16 18 H 0.11 2.86 5.54 -52.48 -0.29 2.57 16 19 C 0.08 1.89 5.25 -17.34 -0.09 1.80 16 20 N -0.78 -18.37 11.06 55.55 0.61 -17.76 16 21 Si 0.90 17.42 29.57 -169.99 -5.03 12.40 16 22 H -0.25 -4.92 7.11 56.52 0.40 -4.52 16 23 H -0.27 -4.85 7.11 56.52 0.40 -4.45 16 24 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 25 C 0.14 2.11 7.78 -8.64 -0.07 2.05 16 26 H 0.06 0.67 7.52 -51.93 -0.39 0.28 16 27 H 0.05 0.52 7.39 -51.93 -0.38 0.13 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.64 6.44 -51.93 -0.33 0.31 16 30 H 0.07 0.76 8.01 -51.93 -0.42 0.35 16 31 H 0.07 0.76 7.51 -51.93 -0.39 0.37 16 32 H 0.07 0.93 7.93 -51.93 -0.41 0.51 16 33 H 0.06 0.57 7.81 -51.93 -0.41 0.16 16 34 H 0.06 0.50 6.86 -51.93 -0.36 0.14 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.09 1.51 8.10 -51.93 -0.42 1.09 16 37 H 0.07 1.22 8.12 -51.93 -0.42 0.79 16 38 H 0.11 2.33 7.32 -52.49 -0.38 1.95 16 39 H 0.10 1.84 8.06 -52.48 -0.42 1.42 16 40 H 0.09 1.86 8.06 -52.49 -0.42 1.43 16 41 H 0.12 3.03 6.50 -52.49 -0.34 2.68 16 42 H 0.29 6.04 8.30 -40.82 -0.34 5.70 16 43 H 0.07 1.05 7.83 -51.93 -0.41 0.64 16 44 H 0.08 1.14 8.01 -51.93 -0.42 0.72 16 LS Contribution 361.71 15.07 5.45 5.45 Total: -1.00 -29.27 361.71 -11.00 -40.27 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -6.59 Total: 7.63 kcal Atomic # 6 Polarization: -37.51 SS G_CDS: -2.49 Total: -39.99 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: 0.12 Total: -37.86 kcal Atomic # 8 Polarization: -47.68 SS G_CDS: -1.87 Total: -49.55 kcal Atomic # 14 Polarization: 17.42 SS G_CDS: -5.03 Total: 12.40 kcal Atomic # 16 Polarization: 62.25 SS G_CDS: -0.60 Total: 61.65 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.27 -11.00 -40.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601421505.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.750 kcal (2) G-P(sol) polarization free energy of solvation -29.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds