Wall clock time and date at job start Tue Mar 31 2020 14:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50696 * 119.99595 * 2 1 4 4 C 1.52999 * 109.47276 * 125.00611 * 3 2 1 5 5 C 1.53002 * 109.47005 * 59.99221 * 4 3 2 6 6 C 1.53009 * 109.46780 * 299.99813 * 4 3 2 7 7 C 1.52996 * 109.47449 * 179.97438 * 4 3 2 8 8 N 1.46495 * 109.47215 * 180.02562 * 7 4 3 9 9 S 1.65603 * 120.00053 * 165.97830 * 8 7 4 10 10 O 1.42101 * 106.39991 * 176.36711 * 9 8 7 11 11 O 1.42092 * 106.40408 * 309.28739 * 9 8 7 12 12 C 1.76201 * 107.21955 * 62.83012 * 9 8 7 13 13 C 1.37635 * 120.12448 * 245.78615 * 12 9 8 14 14 C 1.38617 * 120.24681 * 179.97438 * 13 12 9 15 15 C 1.38659 * 120.50330 * 0.02562 * 14 13 12 16 16 C 1.37600 * 120.24470 * 0.02807 * 15 14 13 17 17 C 1.40693 * 120.13096 * 65.50604 * 12 9 8 18 18 C 1.41403 * 120.24117 * 359.97438 * 17 12 9 19 19 H 1.07998 * 120.00231 * 331.33194 * 18 17 12 20 20 C 1.39946 * 119.99677 * 151.32978 * 18 17 12 21 21 N 1.30830 * 120.00074 * 348.69248 * 20 18 17 22 22 Si 1.86803 * 120.00181 * 168.69509 * 20 18 17 23 23 H 1.48503 * 109.46919 * 89.99484 * 22 20 18 24 24 H 1.48493 * 109.47384 * 209.99900 * 22 20 18 25 25 H 1.48498 * 109.46543 * 329.99966 * 22 20 18 26 26 H 1.07994 * 120.00455 * 359.97438 * 1 2 3 27 27 H 1.07998 * 119.99973 * 180.02562 * 1 2 3 28 28 H 1.07995 * 119.99945 * 180.02562 * 2 1 3 29 29 H 1.08995 * 109.47474 * 4.99684 * 3 2 1 30 30 H 1.09002 * 109.46777 * 245.00518 * 3 2 1 31 31 H 1.09008 * 109.46874 * 180.02562 * 5 4 3 32 32 H 1.08998 * 109.47198 * 300.00459 * 5 4 3 33 33 H 1.08996 * 109.47050 * 60.00606 * 5 4 3 34 34 H 1.09004 * 109.46565 * 299.99878 * 6 4 3 35 35 H 1.08998 * 109.47364 * 59.99577 * 6 4 3 36 36 H 1.08999 * 109.46698 * 180.02562 * 6 4 3 37 37 H 1.08995 * 109.47332 * 59.99054 * 7 4 3 38 38 H 1.09006 * 109.46390 * 299.99653 * 7 4 3 39 39 H 0.97002 * 119.99618 * 345.69592 * 8 7 4 40 40 H 1.07995 * 119.87813 * 359.97438 * 13 12 9 41 41 H 1.07999 * 119.75047 * 179.97438 * 14 13 12 42 42 H 1.07990 * 119.87871 * 179.97438 * 15 14 13 43 43 H 1.08001 * 120.12627 * 179.97438 * 16 15 14 44 44 H 0.96996 * 119.99817 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0351 1.3331 1.1815 5 6 4.0245 0.1729 1.0557 6 6 2.2522 1.1962 2.4890 7 6 3.8005 2.6579 1.1812 8 7 4.7312 2.6844 2.3121 9 16 5.9294 3.8260 2.3718 10 8 6.5965 3.6430 3.6131 11 8 6.5946 3.7756 1.1172 12 6 5.1450 5.4016 2.4561 13 6 5.2739 6.2939 1.4162 14 6 4.6574 7.5338 1.4796 15 6 3.9056 7.8901 2.5889 16 6 3.7641 7.0143 3.6407 17 6 4.3797 5.7500 3.5841 18 6 4.2350 4.8389 4.6557 19 1 4.2817 3.7759 4.4708 20 6 4.0314 5.3146 5.9560 21 7 4.1939 6.5856 6.2205 22 14 3.5278 4.1350 7.3141 23 1 4.7425 3.5883 7.9706 24 1 2.7053 4.8573 8.3175 25 1 2.7352 3.0214 6.7335 26 1 -0.5400 0.9352 0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3585 2.1316 0.0895 30 1 2.6211 1.4026 -0.9315 31 1 4.7165 0.1926 1.8978 32 1 3.4795 -0.7710 1.0557 33 1 4.5823 0.2704 0.1244 34 1 1.5472 2.0228 2.5785 35 1 1.7072 0.2523 2.4890 36 1 2.9443 1.2166 3.3307 37 1 3.0958 3.4847 1.2705 38 1 4.3582 2.7549 0.2497 39 1 4.6431 2.0358 3.0280 40 1 5.8574 6.0270 0.5475 41 1 4.7642 8.2280 0.6592 42 1 3.4301 8.8589 2.6279 43 1 3.1785 7.2940 4.5039 44 1 4.0531 6.9152 7.1218 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601421913.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:49 Heat of formation + Delta-G solvation = -57.171142 kcal Electronic energy + Delta-G solvation = -26283.382649 eV Core-core repulsion = 22713.136048 eV Total energy + Delta-G solvation = -3570.246600 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -38.55679 -37.57769 -36.17812 -34.80129 -34.43322 -33.86951 -31.75157 -30.20496 -29.54335 -27.18954 -26.92525 -25.58781 -25.18599 -21.64497 -21.13526 -20.18493 -18.80177 -18.49917 -17.70121 -16.84748 -16.20200 -15.61931 -15.40785 -15.14709 -14.66230 -14.33345 -14.28014 -13.83278 -13.50593 -13.25559 -13.16664 -13.04574 -12.75673 -12.48363 -11.94240 -11.79697 -11.59191 -11.51381 -11.41124 -11.26387 -11.20936 -11.16584 -11.06396 -10.99575 -10.88323 -10.70954 -10.64387 -10.52240 -10.24023 -9.90290 -9.43789 -9.40193 -9.33670 -8.71635 -8.02614 -7.59324 -7.02189 -4.75356 1.57090 2.22602 2.34883 2.73866 2.96268 2.99539 3.11984 3.77139 3.99127 4.41807 4.64213 4.75518 4.85380 4.95744 5.12486 5.17668 5.31357 5.46366 5.59608 5.68201 5.76422 5.80614 5.82192 5.86881 5.95070 6.04737 6.07727 6.10373 6.21373 6.25009 6.33377 6.40325 6.44276 6.48907 6.60612 6.72768 6.78498 6.96378 7.09598 7.31679 7.49657 7.57746 7.69353 7.81640 7.90112 8.29627 8.50911 8.65855 9.90535 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.010837 B = 0.005339 C = 0.004594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2583.103318 B = 5242.904769 C = 6093.139198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.141 4.141 3 C -0.086 4.086 4 C -0.064 4.064 5 C -0.143 4.143 6 C -0.142 4.142 7 C 0.134 3.866 8 N -1.119 6.119 9 S 2.700 3.300 10 O -0.966 6.966 11 O -0.999 6.999 12 C -0.774 4.774 13 C -0.003 4.003 14 C -0.250 4.250 15 C -0.077 4.077 16 C -0.158 4.158 17 C 0.187 3.813 18 C -0.444 4.444 19 H 0.087 0.913 20 C 0.080 3.920 21 N -0.777 5.777 22 Si 0.913 3.087 23 H -0.262 1.262 24 H -0.273 1.273 25 H -0.256 1.256 26 H 0.095 0.905 27 H 0.092 0.908 28 H 0.108 0.892 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.409 0.591 40 H 0.107 0.893 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.125 0.875 44 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.762 -9.320 -6.216 13.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.159 4.159 3 C -0.124 4.124 4 C -0.066 4.066 5 C -0.200 4.200 6 C -0.199 4.199 7 C 0.007 3.993 8 N -0.878 5.878 9 S 2.798 3.202 10 O -0.956 6.956 11 O -0.989 6.989 12 C -0.870 4.870 13 C -0.023 4.023 14 C -0.271 4.271 15 C -0.096 4.096 16 C -0.178 4.178 17 C 0.182 3.818 18 C -0.472 4.472 19 H 0.105 0.895 20 C -0.141 4.141 21 N -0.401 5.401 22 Si 0.737 3.263 23 H -0.187 1.187 24 H -0.198 1.198 25 H -0.179 1.179 26 H 0.113 0.887 27 H 0.111 0.889 28 H 0.126 0.874 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.244 0.756 40 H 0.125 0.875 41 H 0.112 0.888 42 H 0.111 0.889 43 H 0.143 0.857 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.818 -9.226 -6.179 12.536 hybrid contribution -0.861 -0.009 1.037 1.347 sum -6.678 -9.235 -5.142 12.503 Atomic orbital electron populations 1.23815 0.96015 1.01590 1.02547 1.22935 0.95812 0.98556 0.98576 1.20813 0.97909 0.95591 0.98085 1.20672 0.95042 0.95171 0.95689 1.21917 0.98652 0.97119 1.02350 1.21886 1.00036 1.01778 0.96236 1.21182 0.92151 0.97136 0.88838 1.55680 1.50727 1.49444 1.31906 1.01067 0.72849 0.73785 0.72542 1.93543 1.72056 1.86084 1.43960 1.93440 1.72634 1.87611 1.45258 1.29874 1.27401 1.22209 1.07478 1.20252 0.94087 0.93062 0.94928 1.20488 1.08683 0.97995 0.99921 1.20902 0.97109 0.97541 0.94066 1.21522 1.02877 0.95279 0.98103 1.16998 0.84239 0.92088 0.88474 1.19831 1.40936 0.94902 0.91524 0.89509 1.25945 0.91816 0.95816 1.00480 1.69780 1.32424 1.14953 1.22913 0.86198 0.79765 0.80784 0.79593 1.18684 1.19832 1.17925 0.88660 0.88927 0.87441 0.91010 0.90635 0.92258 0.92651 0.92401 0.92124 0.92632 0.92275 0.91593 0.90909 0.75579 0.87476 0.88794 0.88873 0.85710 0.90179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.81 14.32 29.01 0.42 -1.40 16 2 C -0.14 -1.32 7.65 -36.03 -0.28 -1.59 16 3 C -0.09 -0.89 4.73 -27.89 -0.13 -1.02 16 4 C -0.06 -0.76 0.56 -154.50 -0.09 -0.84 16 5 C -0.14 -1.58 8.05 37.16 0.30 -1.28 16 6 C -0.14 -1.71 8.06 37.16 0.30 -1.41 16 7 C 0.13 1.96 5.08 -4.05 -0.02 1.94 16 8 N -1.12 -19.15 4.47 -10.62 -0.05 -19.20 16 9 S 2.70 58.71 4.96 -107.50 -0.53 58.18 16 10 O -0.97 -24.01 16.53 -57.17 -0.94 -24.96 16 11 O -1.00 -22.65 16.53 -57.17 -0.94 -23.60 16 12 C -0.77 -18.39 5.90 -38.87 -0.23 -18.62 16 13 C 0.00 -0.08 9.53 -39.66 -0.38 -0.46 16 14 C -0.25 -5.46 10.05 -39.29 -0.39 -5.86 16 15 C -0.08 -1.73 10.02 -39.66 -0.40 -2.12 16 16 C -0.16 -3.88 8.66 -38.87 -0.34 -4.22 16 17 C 0.19 4.71 5.55 -106.82 -0.59 4.11 16 18 C -0.44 -10.99 7.63 -37.74 -0.29 -11.27 16 19 H 0.09 2.00 5.82 -52.49 -0.31 1.69 16 20 C 0.08 1.92 5.25 -17.34 -0.09 1.83 16 21 N -0.78 -19.05 10.85 55.55 0.60 -18.45 16 22 Si 0.91 17.88 29.57 -169.99 -5.03 12.86 16 23 H -0.26 -5.23 7.11 56.52 0.40 -4.82 16 24 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 25 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 26 H 0.10 0.84 7.84 -52.49 -0.41 0.43 16 27 H 0.09 0.72 8.06 -52.49 -0.42 0.30 16 28 H 0.11 0.93 6.81 -52.49 -0.36 0.57 16 29 H 0.07 0.74 7.79 -51.93 -0.40 0.34 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.69 7.18 -51.92 -0.37 0.31 16 32 H 0.05 0.52 6.53 -51.93 -0.34 0.18 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.05 0.60 7.22 -51.93 -0.37 0.22 16 36 H 0.06 0.74 6.61 -51.93 -0.34 0.40 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.07 1.06 7.82 -51.93 -0.41 0.65 16 39 H 0.41 6.36 6.28 -34.48 -0.22 6.14 16 40 H 0.11 2.25 7.32 -52.49 -0.38 1.86 16 41 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 42 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 43 H 0.13 3.09 6.21 -52.49 -0.33 2.77 16 44 H 0.29 6.34 8.30 -40.82 -0.34 6.00 16 LS Contribution 363.73 15.07 5.48 5.48 Total: -1.00 -29.80 363.73 -9.96 -39.76 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: -6.34 Total: 12.12 kcal Atomic # 6 Polarization: -39.99 SS G_CDS: -2.21 Total: -42.20 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 0.56 Total: -37.65 kcal Atomic # 8 Polarization: -46.67 SS G_CDS: -1.89 Total: -48.56 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.03 Total: 12.86 kcal Atomic # 16 Polarization: 58.71 SS G_CDS: -0.53 Total: 58.18 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.80 -9.96 -39.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601421913.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.409 kcal (2) G-P(sol) polarization free energy of solvation -29.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds