Wall clock time and date at job start Tue Mar 31 2020 14:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50696 * 119.99595 * 2 1 4 4 C 1.52999 * 109.47276 * 125.00611 * 3 2 1 5 5 C 1.53002 * 109.47005 * 59.99221 * 4 3 2 6 6 C 1.53009 * 109.46780 * 299.99813 * 4 3 2 7 7 C 1.52996 * 109.47449 * 179.97438 * 4 3 2 8 8 N 1.46495 * 109.47215 * 180.02562 * 7 4 3 9 9 S 1.65603 * 120.00053 * 165.97830 * 8 7 4 10 10 O 1.42101 * 106.39991 * 176.36711 * 9 8 7 11 11 O 1.42092 * 106.40408 * 309.28739 * 9 8 7 12 12 C 1.76201 * 107.21955 * 62.83012 * 9 8 7 13 13 C 1.37635 * 120.12448 * 245.78615 * 12 9 8 14 14 C 1.38617 * 120.24681 * 179.97438 * 13 12 9 15 15 C 1.38659 * 120.50330 * 0.02562 * 14 13 12 16 16 C 1.37600 * 120.24470 * 0.02807 * 15 14 13 17 17 C 1.40693 * 120.13096 * 65.50604 * 12 9 8 18 18 C 1.41403 * 120.24117 * 359.97438 * 17 12 9 19 19 H 1.07998 * 120.00231 * 331.33194 * 18 17 12 20 20 C 1.39946 * 119.99677 * 151.32978 * 18 17 12 21 21 N 1.30830 * 120.00074 * 348.69248 * 20 18 17 22 22 Si 1.86803 * 120.00181 * 168.69509 * 20 18 17 23 23 H 1.48503 * 109.46919 * 89.99484 * 22 20 18 24 24 H 1.48493 * 109.47384 * 209.99900 * 22 20 18 25 25 H 1.48498 * 109.46543 * 329.99966 * 22 20 18 26 26 H 1.07994 * 120.00455 * 359.97438 * 1 2 3 27 27 H 1.07998 * 119.99973 * 180.02562 * 1 2 3 28 28 H 1.07995 * 119.99945 * 180.02562 * 2 1 3 29 29 H 1.08995 * 109.47474 * 4.99684 * 3 2 1 30 30 H 1.09002 * 109.46777 * 245.00518 * 3 2 1 31 31 H 1.09008 * 109.46874 * 180.02562 * 5 4 3 32 32 H 1.08998 * 109.47198 * 300.00459 * 5 4 3 33 33 H 1.08996 * 109.47050 * 60.00606 * 5 4 3 34 34 H 1.09004 * 109.46565 * 299.99878 * 6 4 3 35 35 H 1.08998 * 109.47364 * 59.99577 * 6 4 3 36 36 H 1.08999 * 109.46698 * 180.02562 * 6 4 3 37 37 H 1.08995 * 109.47332 * 59.99054 * 7 4 3 38 38 H 1.09006 * 109.46390 * 299.99653 * 7 4 3 39 39 H 0.97002 * 119.99618 * 345.69592 * 8 7 4 40 40 H 1.07995 * 119.87813 * 359.97438 * 13 12 9 41 41 H 1.07999 * 119.75047 * 179.97438 * 14 13 12 42 42 H 1.07990 * 119.87871 * 179.97438 * 15 14 13 43 43 H 1.08001 * 120.12627 * 179.97438 * 16 15 14 44 44 H 0.96996 * 119.99817 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0351 1.3331 1.1815 5 6 4.0245 0.1729 1.0557 6 6 2.2522 1.1962 2.4890 7 6 3.8005 2.6579 1.1812 8 7 4.7312 2.6844 2.3121 9 16 5.9294 3.8260 2.3718 10 8 6.5965 3.6430 3.6131 11 8 6.5946 3.7756 1.1172 12 6 5.1450 5.4016 2.4561 13 6 5.2739 6.2939 1.4162 14 6 4.6574 7.5338 1.4796 15 6 3.9056 7.8901 2.5889 16 6 3.7641 7.0143 3.6407 17 6 4.3797 5.7500 3.5841 18 6 4.2350 4.8389 4.6557 19 1 4.2817 3.7759 4.4708 20 6 4.0314 5.3146 5.9560 21 7 4.1939 6.5856 6.2205 22 14 3.5278 4.1350 7.3141 23 1 4.7425 3.5883 7.9706 24 1 2.7053 4.8573 8.3175 25 1 2.7352 3.0214 6.7335 26 1 -0.5400 0.9352 0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3585 2.1316 0.0895 30 1 2.6211 1.4026 -0.9315 31 1 4.7165 0.1926 1.8978 32 1 3.4795 -0.7710 1.0557 33 1 4.5823 0.2704 0.1244 34 1 1.5472 2.0228 2.5785 35 1 1.7072 0.2523 2.4890 36 1 2.9443 1.2166 3.3307 37 1 3.0958 3.4847 1.2705 38 1 4.3582 2.7549 0.2497 39 1 4.6431 2.0358 3.0280 40 1 5.8574 6.0270 0.5475 41 1 4.7642 8.2280 0.6592 42 1 3.4301 8.8589 2.6279 43 1 3.1785 7.2940 4.5039 44 1 4.0531 6.9152 7.1218 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601421913.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:48 Heat of formation + Delta-G solvation = -74.329030 kcal Electronic energy + Delta-G solvation = -26284.126671 eV Core-core repulsion = 22713.136048 eV Total energy + Delta-G solvation = -3570.990622 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.57300 -39.34631 -37.99888 -36.64552 -35.71018 -35.43040 -32.79895 -31.98985 -31.34207 -28.11855 -27.82404 -27.34680 -26.34503 -23.42774 -22.93264 -21.02128 -20.31203 -19.55923 -19.49455 -18.48487 -17.85334 -17.21628 -16.90280 -16.15771 -16.03502 -15.82408 -15.65184 -15.14313 -14.90281 -14.79855 -14.51092 -14.46561 -13.99270 -13.68261 -13.42918 -13.26494 -12.98856 -12.92951 -12.87433 -12.84584 -12.77639 -12.70650 -12.48058 -12.43513 -12.15787 -12.13380 -11.81436 -11.65168 -11.57014 -11.24036 -11.18456 -11.11409 -10.19134 -10.06236 -9.82787 -9.41904 -8.78429 -6.60148 -0.13629 0.54250 0.98167 1.36022 1.47874 1.52215 1.52329 2.15449 2.39324 2.64731 3.00547 3.49312 3.68300 3.88443 3.95152 4.01605 4.33074 4.34103 4.40472 4.50701 4.54453 4.58343 4.72315 4.74285 4.87495 4.94510 4.94991 4.98711 5.08244 5.11372 5.13413 5.16266 5.26323 5.29946 5.35607 5.48352 5.53027 5.54007 5.71675 5.83905 5.87392 6.01443 6.01836 6.09296 6.25241 6.48702 6.68771 6.84710 8.17344 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.010837 B = 0.005339 C = 0.004594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2583.103318 B = 5242.904769 C = 6093.139198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.147 4.147 3 C -0.084 4.084 4 C -0.056 4.056 5 C -0.145 4.145 6 C -0.142 4.142 7 C 0.127 3.873 8 N -1.106 6.106 9 S 2.719 3.281 10 O -1.001 7.001 11 O -1.009 7.009 12 C -0.791 4.791 13 C -0.017 4.017 14 C -0.251 4.251 15 C -0.077 4.077 16 C -0.186 4.186 17 C 0.162 3.838 18 C -0.471 4.471 19 H 0.094 0.906 20 C 0.039 3.961 21 N -0.809 5.809 22 Si 0.972 3.028 23 H -0.268 1.268 24 H -0.260 1.260 25 H -0.242 1.242 26 H 0.093 0.907 27 H 0.106 0.894 28 H 0.119 0.881 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.059 0.941 34 H 0.050 0.950 35 H 0.071 0.929 36 H 0.050 0.950 37 H 0.058 0.942 38 H 0.075 0.925 39 H 0.418 0.582 40 H 0.122 0.878 41 H 0.127 0.873 42 H 0.121 0.879 43 H 0.114 0.886 44 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.828 -10.581 -6.920 14.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.165 4.165 3 C -0.122 4.122 4 C -0.058 4.058 5 C -0.202 4.202 6 C -0.200 4.200 7 C 0.001 3.999 8 N -0.868 5.868 9 S 2.815 3.185 10 O -0.992 6.992 11 O -1.000 7.000 12 C -0.885 4.885 13 C -0.036 4.036 14 C -0.271 4.271 15 C -0.095 4.095 16 C -0.206 4.206 17 C 0.158 3.842 18 C -0.500 4.500 19 H 0.111 0.889 20 C -0.179 4.179 21 N -0.433 5.433 22 Si 0.792 3.208 23 H -0.192 1.192 24 H -0.184 1.184 25 H -0.164 1.164 26 H 0.111 0.889 27 H 0.124 0.876 28 H 0.136 0.864 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.090 0.910 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.093 0.907 39 H 0.255 0.745 40 H 0.140 0.860 41 H 0.145 0.855 42 H 0.139 0.861 43 H 0.132 0.868 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.892 -10.465 -6.895 14.302 hybrid contribution -0.531 0.436 1.132 1.324 sum -7.423 -10.029 -5.763 13.744 Atomic orbital electron populations 1.23963 0.96023 1.02186 1.01627 1.22934 0.95947 0.98288 0.99355 1.20782 0.97596 0.96308 0.97498 1.20618 0.95167 0.93634 0.96380 1.21943 0.98506 0.97645 1.02088 1.21894 0.99793 1.02282 0.95991 1.21421 0.91780 0.98937 0.87794 1.55286 1.50347 1.48122 1.33010 1.00351 0.72982 0.73588 0.71534 1.93488 1.73577 1.86535 1.45555 1.93417 1.73365 1.87781 1.45405 1.30172 1.27094 1.23740 1.07497 1.20575 0.94403 0.93443 0.95207 1.20889 1.07519 0.98140 1.00513 1.21247 0.96592 0.98273 0.93405 1.21582 1.04003 0.96119 0.98856 1.17308 0.84870 0.92748 0.89278 1.20123 1.42218 0.95336 0.92275 0.88854 1.26799 0.91373 0.97361 1.02374 1.69822 1.33172 1.16433 1.23887 0.85333 0.79410 0.79174 0.76925 1.19249 1.18385 1.16450 0.88891 0.87609 0.86354 0.91387 0.90078 0.93075 0.90625 0.92230 0.93075 0.90981 0.93141 0.92357 0.90672 0.74518 0.86033 0.85545 0.86056 0.86768 0.89457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.13 14.32 67.77 0.97 -2.16 16 2 C -0.15 -2.40 7.65 25.64 0.20 -2.20 16 3 C -0.08 -1.58 4.73 29.85 0.14 -1.44 16 4 C -0.06 -1.25 0.56 -52.18 -0.03 -1.28 16 5 C -0.14 -2.91 8.05 71.98 0.58 -2.33 16 6 C -0.14 -3.24 8.06 71.99 0.58 -2.66 16 7 C 0.13 3.65 5.08 86.38 0.44 4.09 16 8 N -1.11 -37.67 4.47 -187.50 -0.84 -38.51 16 9 S 2.72 119.05 4.96 -56.49 -0.28 118.77 16 10 O -1.00 -50.63 16.53 -128.00 -2.12 -52.74 16 11 O -1.01 -45.50 16.53 -128.00 -2.12 -47.61 16 12 C -0.79 -37.92 5.90 22.73 0.13 -37.78 16 13 C -0.02 -0.74 9.53 22.22 0.21 -0.53 16 14 C -0.25 -10.56 10.05 22.46 0.23 -10.33 16 15 C -0.08 -3.36 10.02 22.22 0.22 -3.14 16 16 C -0.19 -9.27 8.66 22.73 0.20 -9.08 16 17 C 0.16 8.35 5.55 -21.29 -0.12 8.23 16 18 C -0.47 -23.80 7.63 23.46 0.18 -23.62 16 19 H 0.09 4.38 5.82 -2.91 -0.02 4.36 16 20 C 0.04 1.87 5.25 85.26 0.45 2.32 16 21 N -0.81 -40.45 10.85 21.83 0.24 -40.21 16 22 Si 0.97 36.45 29.57 68.60 2.03 38.48 16 23 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 24 H -0.26 -9.07 7.11 99.48 0.71 -8.36 16 25 H -0.24 -8.41 7.11 99.48 0.71 -7.70 16 26 H 0.09 1.48 7.84 -2.91 -0.02 1.45 16 27 H 0.11 1.37 8.06 -2.91 -0.02 1.34 16 28 H 0.12 1.68 6.81 -2.91 -0.02 1.66 16 29 H 0.07 1.32 7.79 -2.39 -0.02 1.30 16 30 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.05 1.11 7.18 -2.38 -0.02 1.09 16 32 H 0.07 1.22 6.53 -2.39 -0.02 1.20 16 33 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 35 H 0.07 1.39 7.22 -2.39 -0.02 1.38 16 36 H 0.05 1.22 6.61 -2.39 -0.02 1.20 16 37 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.07 2.13 7.82 -2.38 -0.02 2.11 16 39 H 0.42 12.90 6.28 -96.74 -0.61 12.29 16 40 H 0.12 4.98 7.32 -2.91 -0.02 4.96 16 41 H 0.13 4.44 8.06 -2.91 -0.02 4.41 16 42 H 0.12 4.53 8.06 -2.92 -0.02 4.50 16 43 H 0.11 5.84 6.21 -2.91 -0.02 5.82 16 44 H 0.29 13.21 8.30 -92.71 -0.77 12.44 16 Total: -1.00 -63.89 363.73 1.69 -62.20 By element: Atomic # 1 Polarization: 41.13 SS G_CDS: 0.39 Total: 41.52 kcal Atomic # 6 Polarization: -86.27 SS G_CDS: 4.38 Total: -81.89 kcal Atomic # 7 Polarization: -78.12 SS G_CDS: -0.60 Total: -78.72 kcal Atomic # 8 Polarization: -96.12 SS G_CDS: -4.23 Total: -100.36 kcal Atomic # 14 Polarization: 36.45 SS G_CDS: 2.03 Total: 38.48 kcal Atomic # 16 Polarization: 119.05 SS G_CDS: -0.28 Total: 118.77 kcal Total: -63.89 1.69 -62.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601421913.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.126 kcal (2) G-P(sol) polarization free energy of solvation -63.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds