Wall clock time and date at job start Tue Mar 31 2020 13:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.47083 * 2 1 4 4 N 1.46503 * 110.01931 * 63.22360 * 3 2 1 5 5 S 1.65601 * 119.99913 * 58.87720 * 4 3 2 6 6 O 1.42109 * 106.39714 * 42.56571 * 5 4 3 7 7 O 1.42103 * 106.39934 * 175.47905 * 5 4 3 8 8 C 1.76197 * 107.21945 * 289.02358 * 5 4 3 9 9 C 1.37641 * 120.12608 * 114.35907 * 8 5 4 10 10 C 1.38612 * 120.24436 * 179.72166 * 9 8 5 11 11 C 1.38658 * 120.50233 * 0.55218 * 10 9 8 12 12 C 1.37597 * 120.24937 * 359.72214 * 11 10 9 13 13 C 1.40689 * 120.12743 * 294.63024 * 8 5 4 14 14 C 1.41396 * 120.24779 * 359.97438 * 13 8 5 15 15 H 1.08003 * 119.99681 * 336.31050 * 14 13 8 16 16 C 1.39936 * 120.00423 * 156.31042 * 14 13 8 17 17 N 1.30825 * 120.00420 * 162.40542 * 16 14 13 18 18 Si 1.86803 * 120.00146 * 342.40041 * 16 14 13 19 19 H 1.48500 * 109.47331 * 94.78864 * 18 16 14 20 20 H 1.48502 * 109.47651 * 214.79586 * 18 16 14 21 21 H 1.48505 * 109.46807 * 334.79573 * 18 16 14 22 22 C 1.54266 * 110.03263 * 301.83258 * 3 2 1 23 23 C 1.54968 * 104.16193 * 217.13718 * 22 3 2 24 24 C 1.54890 * 102.77610 * 37.88517 * 23 22 3 25 25 C 1.53875 * 110.03092 * 184.61356 * 3 2 1 26 26 H 1.08999 * 109.47217 * 186.89963 * 1 2 3 27 27 H 1.09000 * 109.47120 * 306.90220 * 1 2 3 28 28 H 1.09001 * 109.46922 * 66.90234 * 1 2 3 29 29 H 1.08995 * 109.46734 * 240.00030 * 2 1 3 30 30 H 1.09002 * 109.46790 * 119.99766 * 2 1 3 31 31 H 0.97000 * 119.99869 * 238.88471 * 4 3 2 32 32 H 1.07998 * 119.87766 * 359.97438 * 9 8 5 33 33 H 1.08006 * 119.74852 * 180.26117 * 10 9 8 34 34 H 1.08007 * 119.87565 * 179.75052 * 11 10 9 35 35 H 1.07994 * 120.12642 * 179.97438 * 12 11 10 36 36 H 0.97000 * 120.00100 * 180.02562 * 17 16 14 37 37 H 1.09001 * 110.48681 * 335.78237 * 22 3 2 38 38 H 1.08998 * 110.48982 * 98.43040 * 22 3 2 39 39 H 1.09000 * 110.71941 * 279.57953 * 23 22 3 40 40 H 1.08998 * 110.76701 * 156.21659 * 23 22 3 41 41 H 1.08993 * 110.49421 * 203.40888 * 24 23 22 42 42 H 1.09002 * 110.48960 * 80.76209 * 24 23 22 43 43 H 1.08994 * 110.03055 * 238.56707 * 25 3 2 44 44 H 1.08996 * 110.03091 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 1.6226 2.1220 1.2289 5 16 2.0801 1.5222 2.7031 6 8 3.4447 1.1460 2.5772 7 8 1.6159 2.4492 3.6750 8 6 1.1753 0.0329 2.9638 9 6 1.8342 -1.1740 3.0248 10 6 1.1256 -2.3465 3.2356 11 6 -0.2536 -2.3197 3.3758 12 6 -0.9337 -1.1252 3.3127 13 6 -0.2239 0.0721 3.1047 14 6 -0.9121 1.3056 3.0386 15 1 -0.3933 2.2260 3.2623 16 6 -2.2654 1.3337 2.6835 17 7 -2.9891 2.3911 2.9472 18 14 -3.0386 -0.1387 1.8328 19 1 -3.6831 -1.0133 2.8451 20 1 -4.0596 0.3303 0.8618 21 1 -1.9875 -0.9038 1.1149 22 6 1.4955 2.1955 -1.2313 23 6 2.6674 3.1125 -1.6638 24 6 3.9096 2.2213 -1.4150 25 6 3.5743 1.4591 -0.1163 26 1 -0.3633 -1.0202 0.1235 27 1 -0.3633 0.6171 0.8218 28 1 -0.3633 0.4032 -0.9453 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.0781 2.9232 1.1790 32 1 2.9078 -1.2071 2.9122 33 1 1.6512 -3.2887 3.2863 34 1 -0.7961 -3.2398 3.5357 35 1 -2.0080 -1.1067 3.4218 36 1 -3.9272 2.4104 2.7013 37 1 1.2461 1.4943 -2.0278 38 1 0.6242 2.7913 -0.9596 39 1 2.7047 4.0087 -1.0444 40 1 2.5847 3.3739 -2.7188 41 1 4.7990 2.8361 -1.2775 42 1 4.0506 1.5241 -2.2409 43 1 4.0081 1.9735 0.7411 44 1 3.9555 0.4395 -0.1732 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601426170.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:19 Heat of formation + Delta-G solvation = -64.768171 kcal Electronic energy + Delta-G solvation = -27999.616425 eV Core-core repulsion = 24429.040393 eV Total energy + Delta-G solvation = -3570.576032 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.11012 -37.95302 -36.25938 -34.89880 -33.96632 -33.43957 -31.21920 -30.75889 -30.06273 -28.59619 -26.43167 -25.43729 -22.49244 -22.10082 -21.16131 -20.52757 -19.59009 -18.30958 -17.74879 -16.82442 -16.54687 -15.75964 -15.42035 -14.95080 -14.73342 -14.26859 -14.12325 -13.88271 -13.54340 -13.53007 -12.98547 -12.85790 -12.71072 -12.17054 -12.04881 -11.78578 -11.49755 -11.39606 -11.29647 -11.19048 -11.02343 -11.00679 -10.83243 -10.80857 -10.65496 -10.55760 -10.42490 -10.31720 -10.10586 -10.00812 -9.78177 -9.41890 -9.27373 -8.72627 -8.13407 -7.84223 -7.26234 -4.90962 1.53175 2.09913 2.52476 2.91720 3.02603 3.10868 3.71467 3.90493 4.20944 4.62457 4.73261 4.87722 5.00938 5.15294 5.42249 5.48428 5.55504 5.69258 5.72062 5.80561 5.83966 5.86706 5.91793 5.95956 6.03966 6.06878 6.18401 6.21962 6.23344 6.36573 6.37527 6.44331 6.60685 6.62256 6.69613 6.77160 6.81842 6.93501 7.09648 7.14890 7.25751 7.40603 7.56233 7.72548 7.81761 8.10491 8.29906 8.49017 9.70940 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013587 B = 0.007181 C = 0.006367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.290933 B = 3898.396926 C = 4396.540471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.144 4.144 3 C 0.188 3.812 4 N -1.103 6.103 5 S 2.704 3.296 6 O -0.992 6.992 7 O -0.973 6.973 8 C -0.769 4.769 9 C 0.020 3.980 10 C -0.262 4.262 11 C -0.041 4.041 12 C -0.240 4.240 13 C 0.170 3.830 14 C -0.448 4.448 15 H 0.125 0.875 16 C 0.088 3.912 17 N -0.772 5.772 18 Si 0.898 3.102 19 H -0.272 1.272 20 H -0.290 1.290 21 H -0.219 1.219 22 C -0.117 4.117 23 C -0.126 4.126 24 C -0.123 4.123 25 C -0.142 4.142 26 H 0.052 0.948 27 H 0.091 0.909 28 H 0.041 0.959 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.414 0.586 32 H 0.112 0.888 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.292 0.708 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.091 0.909 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.877 -1.945 -9.401 10.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.182 4.182 3 C 0.099 3.901 4 N -0.859 5.859 5 S 2.801 3.199 6 O -0.983 6.983 7 O -0.964 6.964 8 C -0.863 4.863 9 C 0.000 4.000 10 C -0.282 4.282 11 C -0.060 4.060 12 C -0.259 4.259 13 C 0.164 3.836 14 C -0.474 4.474 15 H 0.142 0.858 16 C -0.136 4.136 17 N -0.393 5.393 18 Si 0.724 3.276 19 H -0.199 1.199 20 H -0.218 1.218 21 H -0.142 1.142 22 C -0.156 4.156 23 C -0.164 4.164 24 C -0.161 4.161 25 C -0.181 4.181 26 H 0.071 0.929 27 H 0.110 0.890 28 H 0.060 0.940 29 H 0.083 0.917 30 H 0.099 0.901 31 H 0.248 0.752 32 H 0.130 0.870 33 H 0.116 0.884 34 H 0.114 0.886 35 H 0.119 0.881 36 H 0.103 0.897 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.109 0.891 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.396 -1.462 -8.823 10.445 hybrid contribution -1.527 -0.946 -0.368 1.833 sum 3.869 -2.408 -9.191 10.259 Atomic orbital electron populations 1.22199 0.94822 1.02589 1.02595 1.22257 0.97740 0.95088 1.03146 1.20662 0.93118 0.91947 0.84398 1.55567 1.69583 1.39591 1.21195 1.01009 0.72898 0.74144 0.71890 1.93443 1.33453 1.84889 1.86516 1.93526 1.82017 1.62955 1.57884 1.29790 1.06537 1.16240 1.33724 1.20307 0.97818 0.91590 0.90249 1.20434 0.94019 0.96766 1.16977 1.20762 0.94430 0.96272 0.94499 1.21110 0.98299 0.93634 1.12840 1.16939 0.89544 0.92497 0.84580 1.20352 0.94908 0.95657 1.36477 0.85788 1.26314 0.96743 0.97423 0.93135 1.69686 1.08835 1.29405 1.31379 0.86687 0.79720 0.81350 0.79817 1.19882 1.21809 1.14165 1.22644 0.98106 0.98274 0.96582 1.22535 0.95013 0.98321 1.00494 1.22362 0.97728 0.98282 0.97682 1.22915 0.94700 1.01674 0.98794 0.92903 0.89034 0.94026 0.91687 0.90085 0.75216 0.86998 0.88364 0.88578 0.88059 0.89730 0.90605 0.90688 0.91415 0.91921 0.91962 0.91996 0.89093 0.91024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.87 7.28 37.16 0.27 -2.60 16 2 C -0.14 -2.31 4.08 -26.73 -0.11 -2.42 16 3 C 0.19 2.87 0.70 -130.70 -0.09 2.77 16 4 N -1.10 -19.31 4.70 1.44 0.01 -19.30 16 5 S 2.70 56.88 4.74 -107.50 -0.51 56.37 16 6 O -0.99 -21.00 13.85 -57.17 -0.79 -21.79 16 7 O -0.97 -23.88 15.66 -57.17 -0.90 -24.78 16 8 C -0.77 -16.84 3.60 -38.87 -0.14 -16.98 16 9 C 0.02 0.41 7.71 -39.66 -0.31 0.11 16 10 C -0.26 -5.12 10.05 -39.29 -0.39 -5.52 16 11 C -0.04 -0.82 10.02 -39.66 -0.40 -1.22 16 12 C -0.24 -5.34 7.09 -38.87 -0.28 -5.61 16 13 C 0.17 3.95 3.57 -106.83 -0.38 3.56 16 14 C -0.45 -10.99 7.59 -37.75 -0.29 -11.28 16 15 H 0.12 3.28 5.50 -52.48 -0.29 2.99 16 16 C 0.09 2.09 5.38 -17.34 -0.09 1.99 16 17 N -0.77 -18.76 13.93 55.55 0.77 -17.99 16 18 Si 0.90 18.45 22.98 -169.99 -3.91 14.55 16 19 H -0.27 -5.61 6.66 56.52 0.38 -5.23 16 20 H -0.29 -5.83 7.11 56.52 0.40 -5.43 16 21 H -0.22 -4.33 4.20 56.52 0.24 -4.10 16 22 C -0.12 -1.50 5.00 -25.03 -0.13 -1.62 16 23 C -0.13 -1.43 6.91 -24.70 -0.17 -1.60 16 24 C -0.12 -1.44 6.83 -25.07 -0.17 -1.61 16 25 C -0.14 -2.09 5.18 -25.61 -0.13 -2.22 16 26 H 0.05 0.95 6.90 -51.93 -0.36 0.59 16 27 H 0.09 1.77 3.00 -51.93 -0.16 1.61 16 28 H 0.04 0.63 7.22 -51.93 -0.37 0.25 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.08 1.43 4.18 -51.93 -0.22 1.22 16 31 H 0.41 6.82 8.38 -34.47 -0.29 6.53 16 32 H 0.11 2.12 7.32 -52.49 -0.38 1.73 16 33 H 0.10 1.67 8.06 -52.48 -0.42 1.25 16 34 H 0.10 1.66 8.06 -52.48 -0.42 1.24 16 35 H 0.10 2.24 3.83 -52.49 -0.20 2.04 16 36 H 0.29 6.37 8.30 -40.82 -0.34 6.03 16 37 H 0.08 0.89 7.50 -51.93 -0.39 0.50 16 38 H 0.07 0.97 7.73 -51.93 -0.40 0.56 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.09 1.51 5.99 -51.93 -0.31 1.19 16 44 H 0.07 1.03 7.67 -51.93 -0.40 0.63 16 LS Contribution 325.18 15.07 4.90 4.90 Total: -1.00 -27.88 325.18 -9.28 -37.16 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: -6.05 Total: 15.13 kcal Atomic # 6 Polarization: -41.44 SS G_CDS: -2.81 Total: -44.25 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.78 Total: -37.29 kcal Atomic # 8 Polarization: -44.88 SS G_CDS: -1.69 Total: -46.57 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -3.91 Total: 14.55 kcal Atomic # 16 Polarization: 56.88 SS G_CDS: -0.51 Total: 56.37 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -27.88 -9.28 -37.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601426170.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.604 kcal (2) G-P(sol) polarization free energy of solvation -27.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds