Wall clock time and date at job start Tue Mar 31 2020 13:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.47083 * 2 1 4 4 N 1.46503 * 110.01931 * 63.22360 * 3 2 1 5 5 S 1.65601 * 119.99913 * 58.87720 * 4 3 2 6 6 O 1.42109 * 106.39714 * 42.56571 * 5 4 3 7 7 O 1.42103 * 106.39934 * 175.47905 * 5 4 3 8 8 C 1.76197 * 107.21945 * 289.02358 * 5 4 3 9 9 C 1.37641 * 120.12608 * 114.35907 * 8 5 4 10 10 C 1.38612 * 120.24436 * 179.72166 * 9 8 5 11 11 C 1.38658 * 120.50233 * 0.55218 * 10 9 8 12 12 C 1.37597 * 120.24937 * 359.72214 * 11 10 9 13 13 C 1.40689 * 120.12743 * 294.63024 * 8 5 4 14 14 C 1.41396 * 120.24779 * 359.97438 * 13 8 5 15 15 H 1.08003 * 119.99681 * 336.31050 * 14 13 8 16 16 C 1.39936 * 120.00423 * 156.31042 * 14 13 8 17 17 N 1.30825 * 120.00420 * 162.40542 * 16 14 13 18 18 Si 1.86803 * 120.00146 * 342.40041 * 16 14 13 19 19 H 1.48500 * 109.47331 * 94.78864 * 18 16 14 20 20 H 1.48502 * 109.47651 * 214.79586 * 18 16 14 21 21 H 1.48505 * 109.46807 * 334.79573 * 18 16 14 22 22 C 1.54266 * 110.03263 * 301.83258 * 3 2 1 23 23 C 1.54968 * 104.16193 * 217.13718 * 22 3 2 24 24 C 1.54890 * 102.77610 * 37.88517 * 23 22 3 25 25 C 1.53875 * 110.03092 * 184.61356 * 3 2 1 26 26 H 1.08999 * 109.47217 * 186.89963 * 1 2 3 27 27 H 1.09000 * 109.47120 * 306.90220 * 1 2 3 28 28 H 1.09001 * 109.46922 * 66.90234 * 1 2 3 29 29 H 1.08995 * 109.46734 * 240.00030 * 2 1 3 30 30 H 1.09002 * 109.46790 * 119.99766 * 2 1 3 31 31 H 0.97000 * 119.99869 * 238.88471 * 4 3 2 32 32 H 1.07998 * 119.87766 * 359.97438 * 9 8 5 33 33 H 1.08006 * 119.74852 * 180.26117 * 10 9 8 34 34 H 1.08007 * 119.87565 * 179.75052 * 11 10 9 35 35 H 1.07994 * 120.12642 * 179.97438 * 12 11 10 36 36 H 0.97000 * 120.00100 * 180.02562 * 17 16 14 37 37 H 1.09001 * 110.48681 * 335.78237 * 22 3 2 38 38 H 1.08998 * 110.48982 * 98.43040 * 22 3 2 39 39 H 1.09000 * 110.71941 * 279.57953 * 23 22 3 40 40 H 1.08998 * 110.76701 * 156.21659 * 23 22 3 41 41 H 1.08993 * 110.49421 * 203.40888 * 24 23 22 42 42 H 1.09002 * 110.48960 * 80.76209 * 24 23 22 43 43 H 1.08994 * 110.03055 * 238.56707 * 25 3 2 44 44 H 1.08996 * 110.03091 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 1.6226 2.1220 1.2289 5 16 2.0801 1.5222 2.7031 6 8 3.4447 1.1460 2.5772 7 8 1.6159 2.4492 3.6750 8 6 1.1753 0.0329 2.9638 9 6 1.8342 -1.1740 3.0248 10 6 1.1256 -2.3465 3.2356 11 6 -0.2536 -2.3197 3.3758 12 6 -0.9337 -1.1252 3.3127 13 6 -0.2239 0.0721 3.1047 14 6 -0.9121 1.3056 3.0386 15 1 -0.3933 2.2260 3.2623 16 6 -2.2654 1.3337 2.6835 17 7 -2.9891 2.3911 2.9472 18 14 -3.0386 -0.1387 1.8328 19 1 -3.6831 -1.0133 2.8451 20 1 -4.0596 0.3303 0.8618 21 1 -1.9875 -0.9038 1.1149 22 6 1.4955 2.1955 -1.2313 23 6 2.6674 3.1125 -1.6638 24 6 3.9096 2.2213 -1.4150 25 6 3.5743 1.4591 -0.1163 26 1 -0.3633 -1.0202 0.1235 27 1 -0.3633 0.6171 0.8218 28 1 -0.3633 0.4032 -0.9453 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.0781 2.9232 1.1790 32 1 2.9078 -1.2071 2.9122 33 1 1.6512 -3.2887 3.2863 34 1 -0.7961 -3.2398 3.5357 35 1 -2.0080 -1.1067 3.4218 36 1 -3.9272 2.4104 2.7013 37 1 1.2461 1.4943 -2.0278 38 1 0.6242 2.7913 -0.9596 39 1 2.7047 4.0087 -1.0444 40 1 2.5847 3.3739 -2.7188 41 1 4.7990 2.8361 -1.2775 42 1 4.0506 1.5241 -2.2409 43 1 4.0081 1.9735 0.7411 44 1 3.9555 0.4395 -0.1732 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601426170.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:18 Heat of formation + Delta-G solvation = -82.904012 kcal Electronic energy + Delta-G solvation = -28000.402854 eV Core-core repulsion = 24429.040393 eV Total energy + Delta-G solvation = -3571.362461 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.33351 -39.56975 -37.99143 -36.66684 -35.68273 -34.62216 -32.63994 -32.44746 -31.67721 -29.64350 -27.60791 -27.15585 -23.81860 -23.67012 -22.82536 -21.53073 -20.91212 -19.85865 -19.50046 -18.38765 -18.11778 -17.18865 -17.02173 -16.22616 -16.01119 -15.87009 -15.51826 -15.45000 -15.17759 -15.00398 -14.53165 -14.07496 -13.99898 -13.62481 -13.59493 -13.26812 -13.04933 -13.03050 -12.89045 -12.74545 -12.66150 -12.36902 -12.25479 -12.17863 -11.83194 -11.77888 -11.70293 -11.64629 -11.52175 -11.25176 -11.18169 -11.06514 -10.89858 -10.13075 -9.76619 -9.52397 -9.00831 -6.70415 -0.10635 0.42213 0.84344 1.25457 1.39120 1.49113 2.05640 2.36337 2.51674 3.00288 3.40775 3.59626 3.77930 3.85570 4.01338 4.23144 4.31973 4.34494 4.42766 4.52801 4.62356 4.68245 4.71514 4.73947 4.77505 4.87478 4.93932 5.00665 5.03729 5.11999 5.21368 5.24099 5.26857 5.33233 5.42482 5.43957 5.47284 5.58236 5.61546 5.65421 5.72716 5.80097 5.90144 6.10706 6.28389 6.37165 6.56539 6.72387 8.02175 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013587 B = 0.007181 C = 0.006367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.290933 B = 3898.396926 C = 4396.540471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.144 4.144 3 C 0.180 3.820 4 N -1.095 6.095 5 S 2.713 3.287 6 O -0.997 6.997 7 O -1.017 7.017 8 C -0.773 4.773 9 C 0.010 3.990 10 C -0.250 4.250 11 C -0.037 4.037 12 C -0.263 4.263 13 C 0.165 3.835 14 C -0.474 4.474 15 H 0.092 0.908 16 C 0.061 3.939 17 N -0.815 5.815 18 Si 0.942 3.058 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.207 1.207 22 C -0.115 4.115 23 C -0.123 4.123 24 C -0.117 4.117 25 C -0.146 4.146 26 H 0.044 0.956 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.091 0.909 30 H 0.063 0.937 31 H 0.416 0.584 32 H 0.126 0.874 33 H 0.133 0.867 34 H 0.131 0.869 35 H 0.100 0.900 36 H 0.299 0.701 37 H 0.094 0.906 38 H 0.069 0.931 39 H 0.060 0.940 40 H 0.087 0.913 41 H 0.068 0.932 42 H 0.082 0.918 43 H 0.066 0.934 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.674 -4.239 -11.667 13.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.183 4.183 3 C 0.092 3.908 4 N -0.853 5.853 5 S 2.810 3.190 6 O -0.987 6.987 7 O -1.007 7.007 8 C -0.867 4.867 9 C -0.010 4.010 10 C -0.270 4.270 11 C -0.056 4.056 12 C -0.282 4.282 13 C 0.160 3.840 14 C -0.502 4.502 15 H 0.110 0.890 16 C -0.160 4.160 17 N -0.438 5.438 18 Si 0.766 3.234 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.129 1.129 22 C -0.154 4.154 23 C -0.160 4.160 24 C -0.155 4.155 25 C -0.185 4.185 26 H 0.063 0.937 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.110 0.890 30 H 0.082 0.918 31 H 0.251 0.749 32 H 0.144 0.856 33 H 0.151 0.849 34 H 0.149 0.851 35 H 0.118 0.882 36 H 0.110 0.890 37 H 0.113 0.887 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.105 0.895 41 H 0.087 0.913 42 H 0.100 0.900 43 H 0.085 0.915 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.209 -3.757 -11.084 13.248 hybrid contribution -1.602 -0.330 0.365 1.676 sum 4.607 -4.086 -10.719 12.362 Atomic orbital electron populations 1.22178 0.95756 1.01666 1.02832 1.22272 0.96888 0.95554 1.03554 1.20958 0.93783 0.91851 0.84179 1.55335 1.69505 1.39586 1.20893 1.00543 0.72657 0.73672 0.72156 1.93431 1.33611 1.84901 1.86797 1.93469 1.82648 1.64292 1.60336 1.29941 1.06242 1.17119 1.33382 1.20596 0.98722 0.91498 0.90139 1.20886 0.94025 0.97768 1.14286 1.21172 0.94909 0.96799 0.92686 1.21239 0.98546 0.94176 1.14268 1.17018 0.90104 0.92514 0.84352 1.20190 0.95656 0.95144 1.39183 0.88998 1.26885 0.96681 0.99317 0.93075 1.69715 1.09567 1.31143 1.33394 0.86014 0.79280 0.78986 0.79154 1.19914 1.21103 1.12919 1.22669 0.98432 0.98631 0.95664 1.22542 0.93995 0.97637 1.01834 1.22359 0.98114 0.98456 0.96532 1.22911 0.93950 1.02004 0.99637 0.93713 0.91181 0.92043 0.89016 0.91847 0.74886 0.85602 0.84894 0.85109 0.88215 0.88991 0.88739 0.91195 0.92107 0.89484 0.91282 0.89976 0.91517 0.90828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.52 7.28 71.98 0.52 -5.00 16 2 C -0.14 -4.35 4.08 30.60 0.12 -4.22 16 3 C 0.18 5.26 0.70 4.33 0.00 5.27 16 4 N -1.09 -38.90 4.70 -149.36 -0.70 -39.60 16 5 S 2.71 116.92 4.74 -56.49 -0.27 116.65 16 6 O -1.00 -42.49 13.85 -128.00 -1.77 -44.26 16 7 O -1.02 -52.57 15.66 -128.00 -2.00 -54.58 16 8 C -0.77 -33.78 3.60 22.73 0.08 -33.70 16 9 C 0.01 0.39 7.71 22.22 0.17 0.57 16 10 C -0.25 -8.90 10.05 22.46 0.23 -8.68 16 11 C -0.04 -1.38 10.02 22.22 0.22 -1.16 16 12 C -0.26 -11.40 7.09 22.73 0.16 -11.24 16 13 C 0.16 7.72 3.57 -21.29 -0.08 7.64 16 14 C -0.47 -24.21 7.59 23.46 0.18 -24.03 16 15 H 0.09 5.20 5.50 -2.91 -0.02 5.18 16 16 C 0.06 2.95 5.38 85.25 0.46 3.41 16 17 N -0.82 -41.25 13.93 21.82 0.30 -40.95 16 18 Si 0.94 37.79 22.98 68.60 1.58 39.36 16 19 H -0.27 -10.82 6.66 99.48 0.66 -10.16 16 20 H -0.28 -10.91 7.11 99.48 0.71 -10.20 16 21 H -0.21 -7.82 4.20 99.48 0.42 -7.40 16 22 C -0.12 -2.67 5.00 31.70 0.16 -2.51 16 23 C -0.12 -2.44 6.91 31.91 0.22 -2.22 16 24 C -0.12 -2.41 6.83 31.67 0.22 -2.20 16 25 C -0.15 -4.06 5.18 31.32 0.16 -3.90 16 26 H 0.04 1.51 6.90 -2.39 -0.02 1.49 16 27 H 0.07 2.67 3.00 -2.39 -0.01 2.66 16 28 H 0.06 1.72 7.22 -2.39 -0.02 1.71 16 29 H 0.09 2.24 8.14 -2.39 -0.02 2.23 16 30 H 0.06 2.14 4.18 -2.39 -0.01 2.13 16 31 H 0.42 14.35 8.38 -96.74 -0.81 13.54 16 32 H 0.13 4.52 7.32 -2.91 -0.02 4.50 16 33 H 0.13 3.84 8.06 -2.91 -0.02 3.82 16 34 H 0.13 3.93 8.06 -2.91 -0.02 3.91 16 35 H 0.10 4.32 3.83 -2.91 -0.01 4.31 16 36 H 0.30 13.54 8.30 -92.71 -0.77 12.77 16 37 H 0.09 1.86 7.50 -2.39 -0.02 1.85 16 38 H 0.07 1.71 7.73 -2.39 -0.02 1.69 16 39 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.07 2.18 5.99 -2.39 -0.01 2.17 16 44 H 0.07 1.98 7.67 -2.39 -0.02 1.96 16 Total: -1.00 -61.77 325.18 -0.14 -61.91 By element: Atomic # 1 Polarization: 43.55 SS G_CDS: -0.10 Total: 43.44 kcal Atomic # 6 Polarization: -84.81 SS G_CDS: 2.83 Total: -81.98 kcal Atomic # 7 Polarization: -80.15 SS G_CDS: -0.40 Total: -80.55 kcal Atomic # 8 Polarization: -95.06 SS G_CDS: -3.78 Total: -98.84 kcal Atomic # 14 Polarization: 37.79 SS G_CDS: 1.58 Total: 39.36 kcal Atomic # 16 Polarization: 116.92 SS G_CDS: -0.27 Total: 116.65 kcal Total: -61.77 -0.14 -61.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601426170.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.997 kcal (2) G-P(sol) polarization free energy of solvation -61.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds