Wall clock time and date at job start Tue Mar 31 2020 14:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47137 * 2 1 4 4 C 1.53000 * 109.47229 * 120.00271 * 2 1 3 5 5 H 1.09005 * 115.55900 * 274.31229 * 4 2 1 6 6 C 1.52992 * 117.50245 * 128.62207 * 4 2 1 7 7 C 1.52994 * 60.00183 * 252.50895 * 6 4 2 8 8 H 1.09006 * 117.50421 * 107.50551 * 7 6 4 9 9 C 1.52997 * 117.50279 * 252.51207 * 7 6 4 10 10 N 1.46502 * 109.47310 * 243.60788 * 9 7 6 11 11 S 1.65600 * 120.00422 * 162.95441 * 10 9 7 12 12 O 1.42094 * 106.40154 * 310.36241 * 11 10 9 13 13 O 1.42102 * 106.40261 * 177.44072 * 11 10 9 14 14 C 1.76198 * 107.21512 * 63.90169 * 11 10 9 15 15 C 1.37639 * 120.13061 * 244.44708 * 14 11 10 16 16 C 1.38613 * 120.25173 * 180.32031 * 15 14 11 17 17 C 1.38659 * 120.49669 * 359.67675 * 16 15 14 18 18 C 1.37590 * 120.25356 * 359.97438 * 17 16 15 19 19 C 1.40704 * 120.12967 * 64.15017 * 14 11 10 20 20 C 1.41401 * 120.24170 * 359.97438 * 19 14 11 21 21 H 1.07999 * 119.99986 * 330.25231 * 20 19 14 22 22 C 1.39938 * 119.99971 * 150.25253 * 20 19 14 23 23 N 1.30821 * 120.00232 * 349.44856 * 22 20 19 24 24 Si 1.86798 * 119.99966 * 169.44137 * 22 20 19 25 25 H 1.48501 * 109.47556 * 270.00267 * 24 22 20 26 26 H 1.48502 * 109.47006 * 30.00533 * 24 22 20 27 27 H 1.48509 * 109.47107 * 150.00167 * 24 22 20 28 28 H 1.08994 * 109.47264 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47119 * 300.00018 * 1 2 3 30 30 H 1.09000 * 109.47070 * 59.99931 * 1 2 3 31 31 H 1.09002 * 109.47119 * 239.99982 * 2 1 3 32 32 H 1.09007 * 109.47052 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47197 * 299.99991 * 3 2 1 34 34 H 1.08995 * 109.46952 * 60.00666 * 3 2 1 35 35 H 1.09003 * 117.50489 * 145.01990 * 6 4 2 36 36 H 1.09003 * 117.52003 * 359.97438 * 6 4 2 37 37 H 1.08997 * 109.47886 * 123.60408 * 9 7 6 38 38 H 1.09006 * 109.46756 * 3.60160 * 9 7 6 39 39 H 0.97006 * 119.99510 * 342.95350 * 10 9 7 40 40 H 1.08000 * 119.87656 * 0.02562 * 15 14 11 41 41 H 1.07999 * 119.75234 * 179.69568 * 16 15 14 42 42 H 1.08007 * 119.87540 * 180.02562 * 17 16 15 43 43 H 1.08005 * 120.13335 * 180.02562 * 18 17 16 44 44 H 0.97002 * 120.00692 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 2.1271 -0.1061 2.1449 6 6 3.0741 -1.8313 1.0514 7 6 1.6358 -2.1853 1.4343 8 1 1.0064 -2.6349 0.6661 9 6 1.3846 -2.6737 2.8622 10 7 0.8958 -4.0543 2.8273 11 16 0.9381 -4.9827 4.1979 12 8 2.2530 -4.8632 4.7231 13 8 0.3479 -6.2295 3.8565 14 6 -0.1372 -4.2282 5.3722 15 6 0.3706 -3.7147 6.5440 16 6 -0.4739 -3.1265 7.4725 17 6 -1.8365 -3.0422 7.2302 18 6 -2.3653 -3.5423 6.0626 19 6 -1.5175 -4.1425 5.1130 20 6 -2.0496 -4.6604 3.9097 21 1 -1.4448 -4.6775 3.0151 22 6 -3.3599 -5.1507 3.8779 23 7 -4.0211 -5.3230 4.9935 24 14 -4.1649 -5.5590 2.2425 25 1 -4.8661 -4.3577 1.7223 26 1 -3.1251 -5.9845 1.2714 27 1 -5.1436 -6.6595 2.4336 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 3.8416 -1.9466 1.8168 36 1 3.3911 -2.0484 0.0313 37 1 0.6395 -2.0365 3.3385 38 1 2.3145 -2.6318 3.4294 39 1 0.5474 -4.4247 2.0012 40 1 1.4305 -3.7746 6.7429 41 1 -0.0674 -2.7307 8.3915 42 1 -2.4853 -2.5814 7.9605 43 1 -3.4269 -3.4752 5.8757 44 1 -4.9295 -5.6626 4.9715 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601431148.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:35 Heat of formation + Delta-G solvation = -55.687271 kcal Electronic energy + Delta-G solvation = -25727.353535 eV Core-core repulsion = 22157.171280 eV Total energy + Delta-G solvation = -3570.182255 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -38.71001 -37.58894 -36.19931 -34.87383 -34.80422 -33.87537 -32.75965 -30.21731 -29.55595 -27.25817 -26.02560 -25.49407 -22.93061 -21.66374 -21.16773 -20.87614 -19.91063 -18.46924 -17.69849 -16.74441 -16.33819 -15.66038 -15.42705 -14.99323 -14.83154 -14.34690 -14.02107 -13.78384 -13.57221 -13.26547 -13.15708 -13.12513 -12.75670 -12.46899 -12.26962 -11.91285 -11.63501 -11.51760 -11.37143 -11.29757 -11.16144 -11.14805 -11.10673 -11.02608 -10.98692 -10.73014 -10.65010 -10.48608 -10.07439 -9.90337 -9.78425 -9.45214 -9.35120 -8.70217 -8.03328 -7.59244 -7.01728 -4.76210 1.55561 2.33774 2.72714 2.96769 3.01367 3.10891 3.70786 3.77684 4.00598 4.41294 4.50149 4.72739 4.81289 4.85586 5.01544 5.20148 5.24141 5.30411 5.41338 5.53482 5.57345 5.62225 5.69667 5.78558 5.81164 5.84947 5.96393 6.03665 6.06697 6.10771 6.18287 6.23922 6.25822 6.34500 6.40325 6.49316 6.78648 6.95183 7.08743 7.31048 7.48880 7.57020 7.68719 7.80634 7.89558 8.28844 8.50939 8.64983 9.91492 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.010328 B = 0.004875 C = 0.004219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2710.297178 B = 5742.450953 C = 6635.819852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.065 4.065 3 C -0.144 4.144 4 C -0.141 4.141 5 H 0.106 0.894 6 C -0.175 4.175 7 C -0.149 4.149 8 H 0.110 0.890 9 C 0.155 3.845 10 N -1.119 6.119 11 S 2.701 3.299 12 O -0.999 6.999 13 O -0.965 6.965 14 C -0.774 4.774 15 C -0.004 4.004 16 C -0.249 4.249 17 C -0.077 4.077 18 C -0.157 4.157 19 C 0.187 3.813 20 C -0.448 4.448 21 H 0.087 0.913 22 C 0.081 3.919 23 N -0.778 5.778 24 Si 0.915 3.085 25 H -0.265 1.265 26 H -0.255 1.255 27 H -0.273 1.273 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.411 0.589 40 H 0.108 0.892 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.125 0.875 44 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.505 9.328 -8.690 13.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.084 4.084 3 C -0.201 4.201 4 C -0.160 4.160 5 H 0.124 0.876 6 C -0.212 4.212 7 C -0.169 4.169 8 H 0.128 0.872 9 C 0.029 3.971 10 N -0.876 5.876 11 S 2.799 3.201 12 O -0.990 6.990 13 O -0.955 6.955 14 C -0.869 4.869 15 C -0.024 4.024 16 C -0.270 4.270 17 C -0.096 4.096 18 C -0.177 4.177 19 C 0.183 3.817 20 C -0.476 4.476 21 H 0.105 0.895 22 C -0.140 4.140 23 N -0.402 5.402 24 Si 0.738 3.262 25 H -0.190 1.190 26 H -0.178 1.178 27 H -0.198 1.198 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.114 0.886 36 H 0.110 0.890 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.244 0.756 40 H 0.126 0.874 41 H 0.113 0.887 42 H 0.112 0.888 43 H 0.142 0.858 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.881 8.526 -8.339 13.298 hybrid contribution -1.184 0.133 -0.549 1.312 sum 4.697 8.660 -8.888 13.269 Atomic orbital electron populations 1.21835 0.94783 1.02298 1.01581 1.20695 0.95843 0.95759 0.96057 1.21806 1.00917 0.95749 1.01651 1.22486 1.03246 0.90534 0.99772 0.87560 1.23238 0.92516 1.02940 1.02546 1.22550 0.98403 0.97857 0.98068 0.87187 1.20683 0.99167 0.82321 0.94950 1.55638 1.79949 1.24223 1.27826 1.01047 0.73086 0.73256 0.72756 1.93441 1.38546 1.87281 1.79690 1.93544 1.78540 1.40201 1.83237 1.29909 1.09432 1.32402 1.15169 1.20258 0.97791 0.92325 0.92038 1.20496 0.94042 1.11786 1.00636 1.20907 0.94570 0.97634 0.96484 1.21512 1.00172 1.01014 0.94969 1.17010 0.88516 0.84433 0.91766 1.19847 0.97981 1.33174 0.96612 0.89472 1.25933 0.96708 0.92784 0.98613 1.69770 1.11658 1.30471 1.28280 0.86171 0.79538 0.78992 0.81471 1.18988 1.17810 1.19761 0.92242 0.92368 0.93066 0.91424 0.92722 0.92887 0.92566 0.88558 0.88988 0.91329 0.90778 0.75574 0.87443 0.88738 0.88823 0.85760 0.90168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.03 37.16 0.34 -1.11 16 2 C -0.07 -0.61 3.07 -90.62 -0.28 -0.89 16 3 C -0.14 -1.18 9.18 37.16 0.34 -0.84 16 4 C -0.14 -1.49 4.87 -90.62 -0.44 -1.93 16 5 H 0.11 1.12 8.11 -51.93 -0.42 0.70 16 6 C -0.18 -1.87 9.82 -26.74 -0.26 -2.14 16 7 C -0.15 -1.81 5.11 -90.63 -0.46 -2.28 16 8 H 0.11 1.29 7.45 -51.93 -0.39 0.90 16 9 C 0.16 2.34 6.51 -4.04 -0.03 2.32 16 10 N -1.12 -19.51 5.04 -10.61 -0.05 -19.56 16 11 S 2.70 59.35 4.95 -107.50 -0.53 58.82 16 12 O -1.00 -22.86 16.45 -57.17 -0.94 -23.80 16 13 O -0.96 -24.18 16.67 -57.17 -0.95 -25.13 16 14 C -0.77 -18.50 5.91 -38.87 -0.23 -18.73 16 15 C 0.00 -0.10 9.53 -39.66 -0.38 -0.47 16 16 C -0.25 -5.45 10.05 -39.29 -0.39 -5.84 16 17 C -0.08 -1.72 10.02 -39.66 -0.40 -2.12 16 18 C -0.16 -3.87 8.66 -38.88 -0.34 -4.20 16 19 C 0.19 4.75 5.54 -106.82 -0.59 4.16 16 20 C -0.45 -11.14 7.63 -37.74 -0.29 -11.43 16 21 H 0.09 2.01 5.77 -52.49 -0.30 1.71 16 22 C 0.08 1.93 5.25 -17.35 -0.09 1.84 16 23 N -0.78 -19.14 10.88 55.55 0.60 -18.54 16 24 Si 0.92 17.94 29.57 -169.99 -5.03 12.91 16 25 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 26 H -0.25 -4.96 7.11 56.52 0.40 -4.56 16 27 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 28 H 0.06 0.62 7.29 -51.93 -0.38 0.25 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.61 7.90 -51.93 -0.41 0.20 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.10 1.04 8.03 -51.93 -0.42 0.62 16 36 H 0.09 0.88 8.05 -51.93 -0.42 0.46 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.07 1.12 7.47 -51.93 -0.39 0.73 16 39 H 0.41 6.41 8.31 -34.47 -0.29 6.12 16 40 H 0.11 2.26 7.33 -52.49 -0.38 1.87 16 41 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 42 H 0.09 1.82 8.06 -52.48 -0.42 1.40 16 43 H 0.12 3.09 6.27 -52.48 -0.33 2.76 16 44 H 0.29 6.36 8.30 -40.82 -0.34 6.02 16 LS Contribution 370.32 15.07 5.58 5.58 Total: -1.00 -29.95 370.32 -11.46 -41.41 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: -6.64 Total: 11.98 kcal Atomic # 6 Polarization: -40.16 SS G_CDS: -3.50 Total: -43.67 kcal Atomic # 7 Polarization: -38.65 SS G_CDS: 0.55 Total: -38.10 kcal Atomic # 8 Polarization: -47.04 SS G_CDS: -1.89 Total: -48.93 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.03 Total: 12.91 kcal Atomic # 16 Polarization: 59.35 SS G_CDS: -0.53 Total: 58.82 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.95 -11.46 -41.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601431148.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.274 kcal (2) G-P(sol) polarization free energy of solvation -29.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds