Wall clock time and date at job start Tue Mar 31 2020 14:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47137 * 2 1 4 4 C 1.53000 * 109.47229 * 120.00271 * 2 1 3 5 5 H 1.09005 * 115.55900 * 274.31229 * 4 2 1 6 6 C 1.52992 * 117.50245 * 128.62207 * 4 2 1 7 7 C 1.52994 * 60.00183 * 252.50895 * 6 4 2 8 8 H 1.09006 * 117.50421 * 107.50551 * 7 6 4 9 9 C 1.52997 * 117.50279 * 252.51207 * 7 6 4 10 10 N 1.46502 * 109.47310 * 243.60788 * 9 7 6 11 11 S 1.65600 * 120.00422 * 162.95441 * 10 9 7 12 12 O 1.42094 * 106.40154 * 310.36241 * 11 10 9 13 13 O 1.42102 * 106.40261 * 177.44072 * 11 10 9 14 14 C 1.76198 * 107.21512 * 63.90169 * 11 10 9 15 15 C 1.37639 * 120.13061 * 244.44708 * 14 11 10 16 16 C 1.38613 * 120.25173 * 180.32031 * 15 14 11 17 17 C 1.38659 * 120.49669 * 359.67675 * 16 15 14 18 18 C 1.37590 * 120.25356 * 359.97438 * 17 16 15 19 19 C 1.40704 * 120.12967 * 64.15017 * 14 11 10 20 20 C 1.41401 * 120.24170 * 359.97438 * 19 14 11 21 21 H 1.07999 * 119.99986 * 330.25231 * 20 19 14 22 22 C 1.39938 * 119.99971 * 150.25253 * 20 19 14 23 23 N 1.30821 * 120.00232 * 349.44856 * 22 20 19 24 24 Si 1.86798 * 119.99966 * 169.44137 * 22 20 19 25 25 H 1.48501 * 109.47556 * 270.00267 * 24 22 20 26 26 H 1.48502 * 109.47006 * 30.00533 * 24 22 20 27 27 H 1.48509 * 109.47107 * 150.00167 * 24 22 20 28 28 H 1.08994 * 109.47264 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47119 * 300.00018 * 1 2 3 30 30 H 1.09000 * 109.47070 * 59.99931 * 1 2 3 31 31 H 1.09002 * 109.47119 * 239.99982 * 2 1 3 32 32 H 1.09007 * 109.47052 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47197 * 299.99991 * 3 2 1 34 34 H 1.08995 * 109.46952 * 60.00666 * 3 2 1 35 35 H 1.09003 * 117.50489 * 145.01990 * 6 4 2 36 36 H 1.09003 * 117.52003 * 359.97438 * 6 4 2 37 37 H 1.08997 * 109.47886 * 123.60408 * 9 7 6 38 38 H 1.09006 * 109.46756 * 3.60160 * 9 7 6 39 39 H 0.97006 * 119.99510 * 342.95350 * 10 9 7 40 40 H 1.08000 * 119.87656 * 0.02562 * 15 14 11 41 41 H 1.07999 * 119.75234 * 179.69568 * 16 15 14 42 42 H 1.08007 * 119.87540 * 180.02562 * 17 16 15 43 43 H 1.08005 * 120.13335 * 180.02562 * 18 17 16 44 44 H 0.97002 * 120.00692 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 2.1271 -0.1061 2.1449 6 6 3.0741 -1.8313 1.0514 7 6 1.6358 -2.1853 1.4343 8 1 1.0064 -2.6349 0.6661 9 6 1.3846 -2.6737 2.8622 10 7 0.8958 -4.0543 2.8273 11 16 0.9381 -4.9827 4.1979 12 8 2.2530 -4.8632 4.7231 13 8 0.3479 -6.2295 3.8565 14 6 -0.1372 -4.2282 5.3722 15 6 0.3706 -3.7147 6.5440 16 6 -0.4739 -3.1265 7.4725 17 6 -1.8365 -3.0422 7.2302 18 6 -2.3653 -3.5423 6.0626 19 6 -1.5175 -4.1425 5.1130 20 6 -2.0496 -4.6604 3.9097 21 1 -1.4448 -4.6775 3.0151 22 6 -3.3599 -5.1507 3.8779 23 7 -4.0211 -5.3230 4.9935 24 14 -4.1649 -5.5590 2.2425 25 1 -4.8661 -4.3577 1.7223 26 1 -3.1251 -5.9845 1.2714 27 1 -5.1436 -6.6595 2.4336 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 3.8416 -1.9466 1.8168 36 1 3.3911 -2.0484 0.0313 37 1 0.6395 -2.0365 3.3385 38 1 2.3145 -2.6318 3.4294 39 1 0.5474 -4.4247 2.0012 40 1 1.4305 -3.7746 6.7429 41 1 -0.0674 -2.7307 8.3915 42 1 -2.4853 -2.5814 7.9605 43 1 -3.4269 -3.4752 5.8757 44 1 -4.9295 -5.6626 4.9715 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601431148.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:35 Heat of formation + Delta-G solvation = -72.638234 kcal Electronic energy + Delta-G solvation = -25728.088584 eV Core-core repulsion = 22157.171280 eV Total energy + Delta-G solvation = -3570.917304 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.62472 -39.37428 -38.03144 -36.67216 -36.05630 -35.63182 -33.76095 -32.01768 -31.36090 -27.98416 -27.43327 -27.10067 -23.73071 -23.44553 -22.95100 -21.93663 -20.80031 -20.05921 -19.50141 -18.41250 -17.92858 -17.25112 -17.02203 -16.20689 -16.00922 -15.82089 -15.47173 -15.09269 -14.97616 -14.71343 -14.54820 -14.46496 -13.90689 -13.69760 -13.35928 -13.28297 -13.06769 -12.99077 -12.95809 -12.93893 -12.83885 -12.80024 -12.52234 -12.24157 -12.13394 -12.04087 -11.93308 -11.66242 -11.46885 -11.28945 -11.17119 -10.87914 -10.66038 -10.13191 -9.84067 -9.42389 -8.78431 -6.61732 -0.16647 0.52577 0.96991 1.36311 1.48718 1.51938 2.15837 2.33121 2.63797 2.87996 2.99882 3.46536 3.60211 3.88783 3.92182 3.99246 4.18458 4.30882 4.32987 4.42151 4.50018 4.50749 4.55562 4.71175 4.76675 4.85096 4.88731 4.94431 5.00170 5.03071 5.09943 5.13373 5.14791 5.26505 5.30150 5.35170 5.37611 5.50589 5.51983 5.60105 5.70338 5.82483 5.99917 6.08124 6.23849 6.47390 6.68240 6.83221 8.17847 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.010328 B = 0.004875 C = 0.004219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2710.297178 B = 5742.450953 C = 6635.819852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.063 4.063 3 C -0.142 4.142 4 C -0.133 4.133 5 H 0.105 0.895 6 C -0.167 4.167 7 C -0.163 4.163 8 H 0.115 0.885 9 C 0.152 3.848 10 N -1.107 6.107 11 S 2.720 3.280 12 O -1.010 7.010 13 O -1.000 7.000 14 C -0.791 4.791 15 C -0.018 4.018 16 C -0.249 4.249 17 C -0.076 4.076 18 C -0.184 4.184 19 C 0.163 3.837 20 C -0.477 4.477 21 H 0.094 0.906 22 C 0.039 3.961 23 N -0.810 5.810 24 Si 0.975 3.025 25 H -0.249 1.249 26 H -0.254 1.254 27 H -0.267 1.267 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.095 0.905 36 H 0.107 0.893 37 H 0.060 0.940 38 H 0.073 0.927 39 H 0.420 0.580 40 H 0.122 0.878 41 H 0.128 0.872 42 H 0.123 0.877 43 H 0.114 0.886 44 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.052 10.488 -9.872 15.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.081 4.081 3 C -0.199 4.199 4 C -0.152 4.152 5 H 0.123 0.877 6 C -0.204 4.204 7 C -0.183 4.183 8 H 0.133 0.867 9 C 0.026 3.974 10 N -0.868 5.868 11 S 2.816 3.184 12 O -1.000 7.000 13 O -0.990 6.990 14 C -0.885 4.885 15 C -0.037 4.037 16 C -0.269 4.269 17 C -0.095 4.095 18 C -0.204 4.204 19 C 0.158 3.842 20 C -0.505 4.505 21 H 0.112 0.888 22 C -0.179 4.179 23 N -0.434 5.434 24 Si 0.795 3.205 25 H -0.173 1.173 26 H -0.177 1.177 27 H -0.192 1.192 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.114 0.886 36 H 0.126 0.874 37 H 0.079 0.921 38 H 0.091 0.909 39 H 0.256 0.744 40 H 0.140 0.860 41 H 0.146 0.854 42 H 0.141 0.859 43 H 0.132 0.868 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.426 9.699 -9.500 15.020 hybrid contribution -1.277 -0.164 -0.094 1.291 sum 5.149 9.535 -9.594 14.473 Atomic orbital electron populations 1.21841 0.95269 1.01707 1.01767 1.20708 0.95379 0.96448 0.95590 1.21788 1.01241 0.94887 1.02005 1.22564 1.02500 0.89736 1.00363 0.87676 1.23318 0.91554 1.02177 1.03361 1.22447 1.00089 0.99516 0.96204 0.86661 1.20830 0.98696 0.80668 0.97187 1.55258 1.79859 1.25004 1.26648 1.00325 0.72346 0.72689 0.72996 1.93417 1.38759 1.87457 1.80371 1.93488 1.79079 1.42593 1.83859 1.30199 1.09526 1.32343 1.16449 1.20586 0.98830 0.92363 0.91970 1.20904 0.93742 1.10774 1.01489 1.21259 0.95437 0.96611 0.96165 1.21575 0.99886 1.02642 0.96334 1.17325 0.89324 0.85038 0.92485 1.20151 0.99113 1.34254 0.96958 0.88788 1.26802 0.96873 0.92286 1.01950 1.69814 1.12302 1.31233 1.30100 0.85284 0.78645 0.79386 0.77212 1.17317 1.17695 1.19180 0.93216 0.93189 0.91908 0.90683 0.92196 0.91944 0.92858 0.88643 0.87424 0.92133 0.90867 0.74414 0.85993 0.85428 0.85937 0.86803 0.89439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 9.03 71.98 0.65 -2.05 16 2 C -0.06 -1.04 3.07 -10.79 -0.03 -1.08 16 3 C -0.14 -2.01 9.18 71.98 0.66 -1.35 16 4 C -0.13 -2.57 4.87 -10.80 -0.05 -2.62 16 5 H 0.11 2.07 8.11 -2.38 -0.02 2.05 16 6 C -0.17 -3.23 9.82 30.59 0.30 -2.93 16 7 C -0.16 -3.76 5.11 -10.80 -0.06 -3.82 16 8 H 0.12 2.55 7.45 -2.38 -0.02 2.53 16 9 C 0.15 4.53 6.51 86.38 0.56 5.09 16 10 N -1.11 -38.48 5.04 -187.49 -0.94 -39.42 16 11 S 2.72 120.42 4.95 -56.49 -0.28 120.14 16 12 O -1.01 -46.01 16.45 -128.00 -2.11 -48.11 16 13 O -1.00 -50.94 16.67 -128.00 -2.13 -53.08 16 14 C -0.79 -38.21 5.91 22.73 0.13 -38.07 16 15 C -0.02 -0.80 9.53 22.22 0.21 -0.59 16 16 C -0.25 -10.51 10.05 22.46 0.23 -10.29 16 17 C -0.08 -3.35 10.02 22.22 0.22 -3.13 16 18 C -0.18 -9.24 8.66 22.73 0.20 -9.04 16 19 C 0.16 8.41 5.54 -21.29 -0.12 8.30 16 20 C -0.48 -24.17 7.63 23.46 0.18 -24.00 16 21 H 0.09 4.42 5.77 -2.91 -0.02 4.41 16 22 C 0.04 1.87 5.25 85.26 0.45 2.31 16 23 N -0.81 -40.62 10.88 21.82 0.24 -40.38 16 24 Si 0.98 36.53 29.57 68.60 2.03 38.56 16 25 H -0.25 -8.62 7.11 99.48 0.71 -7.91 16 26 H -0.25 -9.34 7.11 99.48 0.71 -8.63 16 27 H -0.27 -9.68 7.11 99.48 0.71 -8.97 16 28 H 0.05 0.99 7.29 -2.39 -0.02 0.97 16 29 H 0.05 0.97 8.14 -2.39 -0.02 0.96 16 30 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.07 1.16 7.90 -2.39 -0.02 1.14 16 32 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 33 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.05 0.78 8.14 -2.39 -0.02 0.77 16 35 H 0.10 1.88 8.03 -2.39 -0.02 1.86 16 36 H 0.11 1.76 8.05 -2.39 -0.02 1.74 16 37 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.07 2.18 7.47 -2.38 -0.02 2.16 16 39 H 0.42 13.01 8.31 -96.74 -0.80 12.20 16 40 H 0.12 5.02 7.33 -2.91 -0.02 5.00 16 41 H 0.13 4.47 8.06 -2.91 -0.02 4.45 16 42 H 0.12 4.56 8.06 -2.91 -0.02 4.54 16 43 H 0.11 5.83 6.27 -2.91 -0.02 5.81 16 44 H 0.29 13.24 8.30 -92.71 -0.77 12.47 16 Total: -1.00 -64.21 370.32 0.53 -63.68 By element: Atomic # 1 Polarization: 41.69 SS G_CDS: 0.20 Total: 41.89 kcal Atomic # 6 Polarization: -86.80 SS G_CDS: 3.53 Total: -83.27 kcal Atomic # 7 Polarization: -79.09 SS G_CDS: -0.71 Total: -79.80 kcal Atomic # 8 Polarization: -96.95 SS G_CDS: -4.24 Total: -101.19 kcal Atomic # 14 Polarization: 36.53 SS G_CDS: 2.03 Total: 38.56 kcal Atomic # 16 Polarization: 120.42 SS G_CDS: -0.28 Total: 120.14 kcal Total: -64.21 0.53 -63.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601431148.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.963 kcal (2) G-P(sol) polarization free energy of solvation -64.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds