Wall clock time and date at job start Tue Mar 31 2020 13:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47312 * 2 1 4 4 C 1.52998 * 109.47516 * 120.00227 * 2 1 3 5 5 C 1.53003 * 115.55931 * 34.30973 * 4 2 1 6 6 C 1.52998 * 117.50039 * 248.62318 * 4 2 1 7 7 C 1.52997 * 117.50144 * 179.97438 * 4 2 1 8 8 H 1.08997 * 117.51821 * 0.02562 * 7 4 2 9 9 N 1.46498 * 117.50196 * 214.97815 * 7 4 2 10 10 S 1.65599 * 119.99980 * 144.74111 * 9 7 4 11 11 O 1.42099 * 106.40152 * 179.68839 * 10 9 7 12 12 O 1.42096 * 106.40330 * 312.60537 * 10 9 7 13 13 C 1.76202 * 107.21809 * 66.14722 * 10 9 7 14 14 C 1.37640 * 120.12773 * 245.21431 * 13 10 9 15 15 C 1.38609 * 120.24500 * 180.02562 * 14 13 10 16 16 C 1.38655 * 120.50558 * 359.97438 * 15 14 13 17 17 C 1.37593 * 120.24884 * 0.02562 * 16 15 14 18 18 C 1.40694 * 120.12450 * 64.94328 * 13 10 9 19 19 C 1.41399 * 120.24991 * 359.97438 * 18 13 10 20 20 H 1.08003 * 119.99196 * 331.49405 * 19 18 13 21 21 C 1.39943 * 120.00129 * 151.49368 * 19 18 13 22 22 N 1.30819 * 120.00043 * 348.05543 * 21 19 18 23 23 Si 1.86804 * 119.99603 * 168.05601 * 21 19 18 24 24 H 1.48503 * 109.47317 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.46965 * 120.00087 * 23 21 19 26 26 H 1.48498 * 109.47050 * 240.00043 * 23 21 19 27 27 H 1.08999 * 109.47278 * 59.99618 * 1 2 3 28 28 H 1.08996 * 109.46951 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46720 * 299.99341 * 1 2 3 30 30 H 1.09002 * 109.46791 * 239.99903 * 2 1 3 31 31 H 1.08990 * 109.47447 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.47261 * 300.00392 * 3 2 1 33 33 H 1.09008 * 109.46885 * 60.00148 * 3 2 1 34 34 H 1.09004 * 109.46876 * 205.68700 * 5 4 2 35 35 H 1.09002 * 109.47510 * 325.68858 * 5 4 2 36 36 H 1.08996 * 109.47382 * 85.68981 * 5 4 2 37 37 H 1.09005 * 117.50203 * 145.01866 * 6 4 2 38 38 H 1.09001 * 117.52027 * 359.97438 * 6 4 2 39 39 H 0.97000 * 120.00354 * 325.02271 * 9 7 4 40 40 H 1.07997 * 119.87533 * 0.02562 * 14 13 10 41 41 H 1.08002 * 119.74518 * 179.97438 * 15 14 13 42 42 H 1.07997 * 119.87753 * 180.02562 * 16 15 14 43 43 H 1.08003 * 120.13215 * 179.97438 * 17 16 15 44 44 H 0.97003 * 119.99353 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.1853 -1.8963 1.7283 6 6 2.7420 0.1225 2.3151 7 6 3.5551 -0.8286 1.4339 8 1 4.1887 -0.3851 0.6658 9 7 4.0760 -2.0482 2.0563 10 16 5.5269 -2.6752 1.5623 11 8 5.7521 -3.8355 2.3512 12 8 5.4923 -2.6959 0.1419 13 6 6.7761 -1.5170 2.0128 14 6 7.5016 -0.8697 1.0386 15 6 8.4852 0.0415 1.3903 16 6 8.7496 0.3120 2.7242 17 6 8.0367 -0.3234 3.7148 18 6 7.0317 -1.2462 3.3695 19 6 6.2884 -1.9006 4.3789 20 1 5.2781 -2.2264 4.1799 21 6 6.8618 -2.1259 5.6353 22 7 8.1463 -1.9491 5.8094 23 14 5.7931 -2.6793 7.0640 24 1 4.3849 -2.8045 6.6094 25 1 6.2723 -3.9944 7.5603 26 1 5.8724 -1.6785 8.1582 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.3353 -2.0423 2.7980 35 1 0.1339 -1.6837 1.5345 36 1 1.4776 -2.8001 1.1937 37 1 2.5949 -0.1594 3.3577 38 1 2.8410 1.1916 2.1265 39 1 3.5691 -2.4908 2.7549 40 1 7.3038 -1.0724 -0.0035 41 1 9.0500 0.5445 0.6193 42 1 9.5179 1.0241 2.9868 43 1 8.2445 -0.1116 4.7533 44 1 8.5436 -2.1050 6.6805 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601436317.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:59 Heat of formation + Delta-G solvation = -47.120940 kcal Electronic energy + Delta-G solvation = -26375.436199 eV Core-core repulsion = 22805.625408 eV Total energy + Delta-G solvation = -3569.810791 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.25554 -37.58686 -36.20586 -34.83528 -34.28355 -33.87462 -30.98990 -30.19487 -29.55559 -29.22690 -26.19085 -25.54499 -22.95665 -21.68437 -21.53708 -21.09042 -18.74776 -18.17216 -17.71284 -16.97297 -16.22014 -15.69327 -15.39570 -15.27856 -14.50786 -14.39158 -14.27504 -13.33955 -13.28489 -13.16309 -13.04475 -12.77776 -12.53916 -12.46058 -12.06457 -11.93045 -11.64580 -11.51600 -11.44127 -11.28804 -11.20122 -11.17391 -11.11255 -11.04280 -10.98995 -10.76463 -10.69111 -10.59713 -10.49508 -9.90211 -9.49148 -9.45581 -9.28015 -8.37095 -8.03167 -7.60367 -7.03771 -4.76433 1.51599 2.33848 2.71811 2.95871 3.01336 3.09730 3.76078 3.87169 3.97719 4.40229 4.74231 4.77958 4.80039 4.98657 5.07839 5.18533 5.28083 5.39461 5.54800 5.57460 5.61199 5.64903 5.83430 5.85251 5.90161 5.93775 6.02645 6.05122 6.11398 6.15685 6.23654 6.30653 6.37544 6.39923 6.47810 6.60896 6.78108 6.94857 7.08479 7.30564 7.48111 7.53185 7.67454 7.80852 7.89086 8.28594 8.49845 8.64971 9.89266 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012253 B = 0.005331 C = 0.004600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.677371 B = 5251.287689 C = 6084.855313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.059 4.059 3 C -0.152 4.152 4 C -0.136 4.136 5 C -0.121 4.121 6 C -0.184 4.184 7 C 0.113 3.887 8 H 0.131 0.869 9 N -1.090 6.090 10 S 2.701 3.299 11 O -0.964 6.964 12 O -0.996 6.996 13 C -0.773 4.773 14 C -0.004 4.004 15 C -0.249 4.249 16 C -0.077 4.077 17 C -0.157 4.157 18 C 0.188 3.812 19 C -0.445 4.445 20 H 0.086 0.914 21 C 0.080 3.920 22 N -0.776 5.776 23 Si 0.916 3.084 24 H -0.255 1.255 25 H -0.268 1.268 26 H -0.270 1.270 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.097 0.903 38 H 0.104 0.896 39 H 0.411 0.589 40 H 0.107 0.893 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.125 0.875 44 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.269 4.998 -3.824 12.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.078 4.078 3 C -0.209 4.209 4 C -0.139 4.139 5 C -0.178 4.178 6 C -0.224 4.224 7 C 0.004 3.996 8 H 0.148 0.852 9 N -0.842 5.842 10 S 2.798 3.202 11 O -0.954 6.954 12 O -0.986 6.986 13 C -0.869 4.869 14 C -0.024 4.024 15 C -0.270 4.270 16 C -0.096 4.096 17 C -0.177 4.177 18 C 0.183 3.817 19 C -0.473 4.473 20 H 0.104 0.896 21 C -0.141 4.141 22 N -0.399 5.399 23 Si 0.739 3.261 24 H -0.179 1.179 25 H -0.193 1.193 26 H -0.195 1.195 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.115 0.885 38 H 0.122 0.878 39 H 0.245 0.755 40 H 0.125 0.875 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.143 0.857 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.871 4.189 -4.223 12.392 hybrid contribution -0.058 0.287 1.387 1.418 sum -10.929 4.475 -2.835 12.145 Atomic orbital electron populations 1.21888 0.95269 1.01683 1.01336 1.20566 0.95414 0.95461 0.96315 1.21997 1.01480 0.95906 1.01560 1.22057 0.94558 0.99518 0.97723 1.21400 0.99150 0.96501 1.00714 1.23776 1.03870 0.98082 0.96642 1.21279 0.92042 0.87603 0.98684 0.85164 1.55307 1.39324 1.37141 1.52402 1.01109 0.72535 0.74083 0.72429 1.93548 1.84406 1.46754 1.70722 1.93452 1.87006 1.87550 1.30597 1.29865 1.26320 1.29428 1.01252 1.20250 0.93058 0.92515 0.96607 1.20483 1.04621 1.06425 0.95450 1.20898 0.97458 0.97760 0.93483 1.21511 0.99259 0.98191 0.98740 1.16994 0.89085 0.86718 0.88865 1.19855 1.00952 1.30638 0.95845 0.89579 1.25945 0.95128 0.92814 1.00195 1.69788 1.11175 1.33590 1.25387 0.86119 0.81194 0.79133 0.79656 1.17879 1.19322 1.19467 0.93048 0.92284 0.92658 0.90717 0.92213 0.92867 0.92188 0.92537 0.91605 0.92151 0.88460 0.87804 0.75545 0.87460 0.88768 0.88847 0.85748 0.90199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 8.20 37.16 0.30 -1.02 16 2 C -0.06 -0.64 3.15 -90.62 -0.29 -0.93 16 3 C -0.15 -1.54 7.79 37.16 0.29 -1.25 16 4 C -0.14 -1.70 2.46 -154.51 -0.38 -2.08 16 5 C -0.12 -1.40 8.63 37.16 0.32 -1.08 16 6 C -0.18 -2.43 9.14 -26.71 -0.24 -2.68 16 7 C 0.11 1.75 5.81 -67.91 -0.39 1.35 16 8 H 0.13 2.05 7.55 -51.93 -0.39 1.66 16 9 N -1.09 -19.22 4.82 -4.87 -0.02 -19.25 16 10 S 2.70 59.19 4.95 -107.50 -0.53 58.66 16 11 O -0.96 -24.05 16.57 -57.17 -0.95 -24.99 16 12 O -1.00 -22.68 16.69 -57.17 -0.95 -23.63 16 13 C -0.77 -18.42 5.95 -38.87 -0.23 -18.65 16 14 C 0.00 -0.10 9.54 -39.66 -0.38 -0.48 16 15 C -0.25 -5.43 10.05 -39.29 -0.39 -5.82 16 16 C -0.08 -1.72 10.02 -39.66 -0.40 -2.12 16 17 C -0.16 -3.87 8.67 -38.87 -0.34 -4.21 16 18 C 0.19 4.76 5.55 -106.82 -0.59 4.17 16 19 C -0.44 -11.06 7.65 -37.74 -0.29 -11.35 16 20 H 0.09 2.00 5.72 -52.48 -0.30 1.70 16 21 C 0.08 1.92 5.23 -17.34 -0.09 1.83 16 22 N -0.78 -19.02 10.87 55.55 0.60 -18.42 16 23 Si 0.92 17.92 29.58 -169.99 -5.03 12.89 16 24 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 25 H -0.27 -5.27 7.11 56.52 0.40 -4.86 16 26 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.52 6.45 -51.93 -0.33 0.19 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.65 7.08 -51.93 -0.37 0.28 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.58 6.98 -51.92 -0.36 0.21 16 34 H 0.06 0.64 7.63 -51.93 -0.40 0.25 16 35 H 0.07 0.65 5.58 -51.93 -0.29 0.36 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.10 1.30 8.05 -51.93 -0.42 0.88 16 38 H 0.10 1.24 5.85 -51.93 -0.30 0.94 16 39 H 0.41 6.61 7.83 -34.46 -0.27 6.34 16 40 H 0.11 2.24 7.32 -52.49 -0.38 1.86 16 41 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 42 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 43 H 0.12 3.09 6.23 -52.48 -0.33 2.76 16 44 H 0.29 6.30 8.30 -40.82 -0.34 5.96 16 LS Contribution 360.03 15.07 5.43 5.43 Total: -1.00 -29.80 360.03 -10.80 -40.60 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: -6.24 Total: 13.03 kcal Atomic # 6 Polarization: -41.22 SS G_CDS: -3.10 Total: -44.32 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 0.58 Total: -37.66 kcal Atomic # 8 Polarization: -46.72 SS G_CDS: -1.90 Total: -48.62 kcal Atomic # 14 Polarization: 17.92 SS G_CDS: -5.03 Total: 12.89 kcal Atomic # 16 Polarization: 59.19 SS G_CDS: -0.53 Total: 58.66 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.80 -10.80 -40.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601436317.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.523 kcal (2) G-P(sol) polarization free energy of solvation -29.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds