Wall clock time and date at job start Tue Mar 31 2020 13:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46878 * 2 1 4 4 C 1.53004 * 109.47043 * 119.99587 * 2 1 3 5 5 C 1.52995 * 115.55965 * 28.75744 * 4 2 1 6 6 C 1.53071 * 117.51379 * 243.04983 * 4 2 1 7 7 C 1.52994 * 59.98576 * 252.52758 * 6 4 2 8 8 H 1.09005 * 117.49671 * 252.49930 * 7 6 4 9 9 N 1.46495 * 117.50071 * 107.50286 * 7 6 4 10 10 S 1.65604 * 120.00062 * 94.51347 * 9 7 6 11 11 O 1.42104 * 106.40043 * 309.88909 * 10 9 7 12 12 O 1.42101 * 106.40224 * 176.97336 * 10 9 7 13 13 C 1.76200 * 107.22070 * 63.43165 * 10 9 7 14 14 C 1.37637 * 120.12848 * 245.50906 * 13 10 9 15 15 C 1.38612 * 120.24674 * 180.02562 * 14 13 10 16 16 C 1.38652 * 120.50214 * 359.97438 * 15 14 13 17 17 C 1.37596 * 120.25191 * 0.02562 * 16 15 14 18 18 C 1.40697 * 120.12375 * 65.52682 * 13 10 9 19 19 C 1.41392 * 120.25107 * 0.02562 * 18 13 10 20 20 H 1.08004 * 119.99225 * 329.29845 * 19 18 13 21 21 C 1.39942 * 120.00550 * 149.29795 * 19 18 13 22 22 N 1.30818 * 119.99883 * 166.13110 * 21 19 18 23 23 Si 1.86801 * 119.99690 * 346.13593 * 21 19 18 24 24 H 1.48491 * 109.47276 * 89.63937 * 23 21 19 25 25 H 1.48499 * 109.46912 * 209.64003 * 23 21 19 26 26 H 1.48500 * 109.46904 * 329.63417 * 23 21 19 27 27 H 1.08993 * 109.47064 * 60.00608 * 1 2 3 28 28 H 1.09007 * 109.46479 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47770 * 299.99773 * 1 2 3 30 30 H 1.08997 * 109.47770 * 240.00227 * 2 1 3 31 31 H 1.08993 * 109.47520 * 180.69207 * 3 2 1 32 32 H 1.09002 * 109.47189 * 300.70118 * 3 2 1 33 33 H 1.09007 * 109.47351 * 60.69350 * 3 2 1 34 34 H 1.09007 * 109.46846 * 205.68664 * 5 4 2 35 35 H 1.08997 * 109.47532 * 325.68101 * 5 4 2 36 36 H 1.08996 * 109.47510 * 85.68743 * 5 4 2 37 37 H 1.09002 * 117.49399 * 145.04013 * 6 4 2 38 38 H 1.09004 * 117.53504 * 359.97438 * 6 4 2 39 39 H 0.96999 * 120.00365 * 274.51029 * 9 7 6 40 40 H 1.08005 * 119.87392 * 0.04224 * 14 13 10 41 41 H 1.08004 * 119.74603 * 179.97438 * 15 14 13 42 42 H 1.08002 * 119.87134 * 180.27900 * 16 15 14 43 43 H 1.07996 * 120.13024 * 179.97438 * 17 16 15 44 44 H 0.97002 * 119.99665 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.1192 -1.8090 1.8056 6 6 2.8558 0.0961 2.2541 7 6 3.5490 -0.9428 1.3705 8 1 3.8858 -1.8639 1.8463 9 7 4.3949 -0.4483 0.2815 10 16 6.0247 -0.2697 0.5147 11 8 6.1791 0.4691 1.7187 12 8 6.5644 0.1519 -0.7304 13 6 6.6859 -1.8729 0.8263 14 6 7.2292 -2.1691 2.0557 15 6 7.7505 -3.4294 2.3033 16 6 7.7307 -4.4051 1.3185 17 6 7.1926 -4.1313 0.0821 18 6 6.6607 -2.8551 -0.1808 19 6 6.1060 -2.5620 -1.4479 20 1 5.2988 -1.8493 -1.5321 21 6 6.6026 -3.1953 -2.5928 22 7 5.9307 -3.1410 -3.7138 23 14 8.2251 -4.1182 -2.5200 24 1 7.9740 -5.5316 -2.1403 25 1 8.8808 -4.0723 -3.8516 26 1 9.1104 -3.4841 -1.5103 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3632 -1.0278 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 3.1298 1.4427 -0.0124 32 1 1.6664 1.9600 -0.8836 33 1 1.6868 1.9528 0.8962 34 1 1.3073 -1.9338 2.8721 35 1 0.0799 -1.5192 1.6516 36 1 1.3145 -2.7492 1.2899 37 1 2.7362 -0.1416 3.3112 38 1 3.0298 1.1476 2.0253 39 1 4.0005 -0.2255 -0.5763 40 1 7.2492 -1.4169 2.8304 41 1 8.1753 -3.6530 3.2709 42 1 8.1356 -5.3851 1.5239 43 1 7.1786 -4.8927 -0.6837 44 1 6.2748 -3.5802 -4.5073 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601436318.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:02 Heat of formation + Delta-G solvation = -38.819096 kcal Electronic energy + Delta-G solvation = -26616.998733 eV Core-core repulsion = 23047.547937 eV Total energy + Delta-G solvation = -3569.450796 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.34698 -37.88188 -36.22005 -34.85827 -33.92529 -33.70035 -31.76566 -30.72140 -30.12296 -28.75322 -26.15850 -25.41952 -22.93179 -22.07965 -21.58450 -21.14548 -18.63017 -18.15809 -17.75211 -16.97054 -16.63990 -16.24063 -15.36065 -14.67282 -14.58543 -14.37140 -14.19550 -13.73004 -13.70162 -13.39351 -13.18138 -12.80449 -12.75486 -12.32882 -12.27258 -11.93968 -11.72112 -11.61072 -11.57420 -11.31624 -11.19546 -11.14877 -11.08691 -10.97908 -10.91409 -10.78517 -10.56127 -10.39936 -10.29284 -9.96159 -9.57780 -9.33210 -9.25506 -8.65043 -8.26521 -7.85040 -7.21172 -4.86543 1.47717 2.06778 2.51140 2.96059 3.08227 3.18637 3.77906 3.83085 3.89292 4.27363 4.68181 4.77944 4.81611 4.98012 5.05422 5.13342 5.21662 5.47272 5.55581 5.57905 5.68536 5.76607 5.82234 5.86313 5.89097 5.92454 5.95118 5.98874 6.03082 6.15217 6.16840 6.19255 6.34258 6.39576 6.42816 6.49450 6.59791 6.68060 6.92772 7.07861 7.23256 7.37512 7.52331 7.58187 7.79077 8.03938 8.26125 8.48754 9.78519 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013591 B = 0.005416 C = 0.004845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.662980 B = 5168.171838 C = 5778.019288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.062 4.062 3 C -0.157 4.157 4 C -0.116 4.116 5 C -0.121 4.121 6 C -0.184 4.184 7 C 0.099 3.901 8 H 0.122 0.878 9 N -1.090 6.090 10 S 2.702 3.298 11 O -0.991 6.991 12 O -0.961 6.961 13 C -0.769 4.769 14 C 0.018 3.982 15 C -0.261 4.261 16 C -0.043 4.043 17 C -0.240 4.240 18 C 0.160 3.840 19 C -0.427 4.427 20 H 0.103 0.897 21 C 0.089 3.911 22 N -0.781 5.781 23 Si 0.916 3.084 24 H -0.266 1.266 25 H -0.286 1.286 26 H -0.242 1.242 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.097 0.903 38 H 0.105 0.895 39 H 0.413 0.587 40 H 0.114 0.886 41 H 0.100 0.900 42 H 0.099 0.901 43 H 0.109 0.891 44 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.240 1.597 6.230 10.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.081 4.081 3 C -0.215 4.215 4 C -0.118 4.118 5 C -0.179 4.179 6 C -0.223 4.223 7 C -0.009 4.009 8 H 0.139 0.861 9 N -0.846 5.846 10 S 2.799 3.201 11 O -0.981 6.981 12 O -0.951 6.951 13 C -0.863 4.863 14 C -0.002 4.002 15 C -0.281 4.281 16 C -0.061 4.061 17 C -0.259 4.259 18 C 0.155 3.845 19 C -0.454 4.454 20 H 0.120 0.880 21 C -0.134 4.134 22 N -0.402 5.402 23 Si 0.742 3.258 24 H -0.192 1.192 25 H -0.213 1.213 26 H -0.165 1.165 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.115 0.885 38 H 0.123 0.877 39 H 0.249 0.751 40 H 0.132 0.868 41 H 0.119 0.881 42 H 0.117 0.883 43 H 0.126 0.874 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.790 2.372 6.038 10.138 hybrid contribution 0.504 -1.299 -0.427 1.457 sum -7.285 1.073 5.611 9.258 Atomic orbital electron populations 1.21882 0.95092 1.01686 1.01353 1.20534 0.95516 0.95601 0.96415 1.22109 1.02017 0.95800 1.01553 1.21820 0.91595 1.00167 0.98218 1.21499 0.98918 0.97173 1.00269 1.23836 1.03378 0.98701 0.96376 1.21341 0.90015 0.97973 0.91609 0.86052 1.55259 1.26026 1.82546 1.20733 1.01122 0.71723 0.74462 0.72825 1.93462 1.85529 1.70442 1.48696 1.93571 1.76098 1.81857 1.43621 1.29957 1.29919 1.22157 1.04269 1.20420 0.90563 0.95610 0.93626 1.20496 1.13146 0.95115 0.99370 1.20828 0.94499 0.97258 0.93539 1.21269 1.09764 0.97395 0.97518 1.17065 0.86456 0.89584 0.91393 1.19798 1.15886 1.20175 0.89570 0.87962 1.26167 0.99106 0.93487 0.94640 1.69618 1.36551 1.32263 1.01808 0.86287 0.81664 0.79687 0.78124 1.19241 1.21296 1.16487 0.92940 0.92232 0.92703 0.90441 0.91746 0.92764 0.92303 0.92469 0.91334 0.91954 0.88506 0.87709 0.75075 0.86808 0.88141 0.88294 0.87362 0.89718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 7.98 37.16 0.30 -1.14 16 2 C -0.06 -0.76 2.49 -90.62 -0.23 -0.98 16 3 C -0.16 -1.91 7.58 37.16 0.28 -1.63 16 4 C -0.12 -1.48 2.52 -154.47 -0.39 -1.87 16 5 C -0.12 -1.32 9.36 37.16 0.35 -0.97 16 6 C -0.18 -2.47 9.08 -26.70 -0.24 -2.72 16 7 C 0.10 1.55 6.11 -67.94 -0.41 1.14 16 8 H 0.12 1.92 8.14 -51.93 -0.42 1.50 16 9 N -1.09 -19.52 3.89 -4.90 -0.02 -19.54 16 10 S 2.70 58.48 4.96 -107.50 -0.53 57.94 16 11 O -0.99 -21.93 16.76 -57.17 -0.96 -22.89 16 12 O -0.96 -23.98 16.56 -57.17 -0.95 -24.93 16 13 C -0.77 -17.67 5.91 -38.87 -0.23 -17.90 16 14 C 0.02 0.38 9.54 -39.66 -0.38 0.00 16 15 C -0.26 -5.26 10.05 -39.29 -0.39 -5.66 16 16 C -0.04 -0.88 10.02 -39.66 -0.40 -1.28 16 17 C -0.24 -5.52 7.15 -38.87 -0.28 -5.80 16 18 C 0.16 3.92 5.13 -106.82 -0.55 3.37 16 19 C -0.43 -10.95 8.10 -37.74 -0.31 -11.25 16 20 H 0.10 2.61 6.11 -52.48 -0.32 2.29 16 21 C 0.09 2.24 5.45 -17.35 -0.09 2.15 16 22 N -0.78 -19.60 13.93 55.55 0.77 -18.82 16 23 Si 0.92 20.25 24.45 -169.99 -4.16 16.09 16 24 H -0.27 -5.52 6.49 56.52 0.37 -5.15 16 25 H -0.29 -6.05 7.11 56.52 0.40 -5.65 16 26 H -0.24 -5.60 6.90 56.52 0.39 -5.21 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.57 6.61 -51.93 -0.34 0.23 16 29 H 0.05 0.51 8.11 -51.93 -0.42 0.09 16 30 H 0.08 1.04 7.62 -51.93 -0.40 0.64 16 31 H 0.06 0.88 5.48 -51.93 -0.28 0.59 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.66 7.22 -51.93 -0.37 0.28 16 34 H 0.06 0.57 7.90 -51.92 -0.41 0.16 16 35 H 0.07 0.64 5.61 -51.93 -0.29 0.35 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.10 1.16 8.05 -51.93 -0.42 0.74 16 38 H 0.10 1.44 5.82 -51.93 -0.30 1.14 16 39 H 0.41 7.05 6.42 -34.47 -0.22 6.83 16 40 H 0.11 2.22 7.32 -52.48 -0.38 1.84 16 41 H 0.10 1.73 8.06 -52.48 -0.42 1.31 16 42 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 43 H 0.11 2.43 4.37 -52.49 -0.23 2.20 16 44 H 0.29 6.59 8.30 -40.82 -0.34 6.25 16 LS Contribution 351.11 15.07 5.29 5.29 Total: -1.00 -29.51 351.11 -9.63 -39.14 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -6.11 Total: 12.26 kcal Atomic # 6 Polarization: -41.58 SS G_CDS: -2.97 Total: -44.55 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 0.75 Total: -38.36 kcal Atomic # 8 Polarization: -45.92 SS G_CDS: -1.91 Total: -47.82 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -4.16 Total: 16.09 kcal Atomic # 16 Polarization: 58.48 SS G_CDS: -0.53 Total: 57.94 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.51 -9.63 -39.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601436318.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.324 kcal (2) G-P(sol) polarization free energy of solvation -29.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds