Wall clock time and date at job start Tue Mar 31 2020 13:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46878 * 2 1 4 4 C 1.53004 * 109.47043 * 119.99587 * 2 1 3 5 5 C 1.52995 * 115.55965 * 28.75744 * 4 2 1 6 6 C 1.53071 * 117.51379 * 243.04983 * 4 2 1 7 7 C 1.52994 * 59.98576 * 252.52758 * 6 4 2 8 8 H 1.09005 * 117.49671 * 252.49930 * 7 6 4 9 9 N 1.46495 * 117.50071 * 107.50286 * 7 6 4 10 10 S 1.65604 * 120.00062 * 94.51347 * 9 7 6 11 11 O 1.42104 * 106.40043 * 309.88909 * 10 9 7 12 12 O 1.42101 * 106.40224 * 176.97336 * 10 9 7 13 13 C 1.76200 * 107.22070 * 63.43165 * 10 9 7 14 14 C 1.37637 * 120.12848 * 245.50906 * 13 10 9 15 15 C 1.38612 * 120.24674 * 180.02562 * 14 13 10 16 16 C 1.38652 * 120.50214 * 359.97438 * 15 14 13 17 17 C 1.37596 * 120.25191 * 0.02562 * 16 15 14 18 18 C 1.40697 * 120.12375 * 65.52682 * 13 10 9 19 19 C 1.41392 * 120.25107 * 0.02562 * 18 13 10 20 20 H 1.08004 * 119.99225 * 329.29845 * 19 18 13 21 21 C 1.39942 * 120.00550 * 149.29795 * 19 18 13 22 22 N 1.30818 * 119.99883 * 166.13110 * 21 19 18 23 23 Si 1.86801 * 119.99690 * 346.13593 * 21 19 18 24 24 H 1.48491 * 109.47276 * 89.63937 * 23 21 19 25 25 H 1.48499 * 109.46912 * 209.64003 * 23 21 19 26 26 H 1.48500 * 109.46904 * 329.63417 * 23 21 19 27 27 H 1.08993 * 109.47064 * 60.00608 * 1 2 3 28 28 H 1.09007 * 109.46479 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47770 * 299.99773 * 1 2 3 30 30 H 1.08997 * 109.47770 * 240.00227 * 2 1 3 31 31 H 1.08993 * 109.47520 * 180.69207 * 3 2 1 32 32 H 1.09002 * 109.47189 * 300.70118 * 3 2 1 33 33 H 1.09007 * 109.47351 * 60.69350 * 3 2 1 34 34 H 1.09007 * 109.46846 * 205.68664 * 5 4 2 35 35 H 1.08997 * 109.47532 * 325.68101 * 5 4 2 36 36 H 1.08996 * 109.47510 * 85.68743 * 5 4 2 37 37 H 1.09002 * 117.49399 * 145.04013 * 6 4 2 38 38 H 1.09004 * 117.53504 * 359.97438 * 6 4 2 39 39 H 0.96999 * 120.00365 * 274.51029 * 9 7 6 40 40 H 1.08005 * 119.87392 * 0.04224 * 14 13 10 41 41 H 1.08004 * 119.74603 * 179.97438 * 15 14 13 42 42 H 1.08002 * 119.87134 * 180.27900 * 16 15 14 43 43 H 1.07996 * 120.13024 * 179.97438 * 17 16 15 44 44 H 0.97002 * 119.99665 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.1192 -1.8090 1.8056 6 6 2.8558 0.0961 2.2541 7 6 3.5490 -0.9428 1.3705 8 1 3.8858 -1.8639 1.8463 9 7 4.3949 -0.4483 0.2815 10 16 6.0247 -0.2697 0.5147 11 8 6.1791 0.4691 1.7187 12 8 6.5644 0.1519 -0.7304 13 6 6.6859 -1.8729 0.8263 14 6 7.2292 -2.1691 2.0557 15 6 7.7505 -3.4294 2.3033 16 6 7.7307 -4.4051 1.3185 17 6 7.1926 -4.1313 0.0821 18 6 6.6607 -2.8551 -0.1808 19 6 6.1060 -2.5620 -1.4479 20 1 5.2988 -1.8493 -1.5321 21 6 6.6026 -3.1953 -2.5928 22 7 5.9307 -3.1410 -3.7138 23 14 8.2251 -4.1182 -2.5200 24 1 7.9740 -5.5316 -2.1403 25 1 8.8808 -4.0723 -3.8516 26 1 9.1104 -3.4841 -1.5103 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3632 -1.0278 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 3.1298 1.4427 -0.0124 32 1 1.6664 1.9600 -0.8836 33 1 1.6868 1.9528 0.8962 34 1 1.3073 -1.9338 2.8721 35 1 0.0799 -1.5192 1.6516 36 1 1.3145 -2.7492 1.2899 37 1 2.7362 -0.1416 3.3112 38 1 3.0298 1.1476 2.0253 39 1 4.0005 -0.2255 -0.5763 40 1 7.2492 -1.4169 2.8304 41 1 8.1753 -3.6530 3.2709 42 1 8.1356 -5.3851 1.5239 43 1 7.1786 -4.8927 -0.6837 44 1 6.2748 -3.5802 -4.5073 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601436318.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:01 Heat of formation + Delta-G solvation = -57.173856 kcal Electronic energy + Delta-G solvation = -26617.794655 eV Core-core repulsion = 23047.547937 eV Total energy + Delta-G solvation = -3570.246718 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.44362 -39.61308 -38.02848 -36.69054 -35.67908 -34.90416 -32.97997 -32.46666 -31.83355 -29.74026 -27.22967 -27.04874 -23.94344 -23.77308 -23.02600 -22.69152 -20.24738 -19.57403 -19.25366 -18.61538 -18.07996 -17.71830 -17.10264 -16.31809 -15.93280 -15.75597 -15.42935 -15.35983 -15.29746 -14.72824 -14.53834 -14.11105 -14.03642 -13.73325 -13.62105 -13.20305 -13.13613 -13.04789 -13.00499 -12.91173 -12.69995 -12.68587 -12.55783 -12.54898 -12.29471 -12.16550 -11.95951 -11.72791 -11.51764 -11.46538 -11.20064 -10.97462 -10.43131 -10.00039 -9.97844 -9.61008 -9.03821 -6.73042 -0.21231 0.32686 0.75802 1.19195 1.34285 1.41895 2.02298 2.25003 2.50837 2.72464 2.99147 3.29754 3.68499 3.74753 3.88148 3.91321 4.07686 4.22895 4.26969 4.30406 4.46920 4.49026 4.60954 4.65077 4.69945 4.82750 4.89878 4.92017 4.99426 5.01346 5.05331 5.09416 5.17094 5.20709 5.25209 5.35895 5.36828 5.41479 5.47124 5.54510 5.59576 5.63983 5.81377 6.00088 6.11625 6.22527 6.47691 6.66060 8.01550 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013591 B = 0.005416 C = 0.004845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.662980 B = 5168.171838 C = 5778.019288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.067 4.067 3 C -0.158 4.158 4 C -0.098 4.098 5 C -0.121 4.121 6 C -0.175 4.175 7 C 0.062 3.938 8 H 0.116 0.884 9 N -1.080 6.080 10 S 2.716 3.284 11 O -0.998 6.998 12 O -1.002 7.002 13 C -0.781 4.781 14 C 0.003 3.997 15 C -0.247 4.247 16 C -0.039 4.039 17 C -0.263 4.263 18 C 0.147 3.853 19 C -0.464 4.464 20 H 0.085 0.915 21 C 0.054 3.946 22 N -0.817 5.817 23 Si 0.956 3.044 24 H -0.242 1.242 25 H -0.275 1.275 26 H -0.260 1.260 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.042 0.958 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.088 0.912 36 H 0.054 0.946 37 H 0.116 0.884 38 H 0.101 0.899 39 H 0.415 0.585 40 H 0.131 0.869 41 H 0.140 0.860 42 H 0.140 0.860 43 H 0.111 0.889 44 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.659 0.489 8.591 12.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.086 4.086 3 C -0.215 4.215 4 C -0.100 4.100 5 C -0.178 4.178 6 C -0.214 4.214 7 C -0.046 4.046 8 H 0.133 0.867 9 N -0.838 5.838 10 S 2.813 3.187 11 O -0.988 6.988 12 O -0.993 6.993 13 C -0.874 4.874 14 C -0.017 4.017 15 C -0.267 4.267 16 C -0.057 4.057 17 C -0.282 4.282 18 C 0.142 3.858 19 C -0.492 4.492 20 H 0.103 0.897 21 C -0.165 4.165 22 N -0.441 5.441 23 Si 0.779 3.221 24 H -0.167 1.167 25 H -0.201 1.201 26 H -0.184 1.184 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.107 0.893 36 H 0.073 0.927 37 H 0.135 0.865 38 H 0.119 0.881 39 H 0.252 0.748 40 H 0.148 0.852 41 H 0.158 0.842 42 H 0.157 0.843 43 H 0.129 0.871 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.215 1.252 8.404 11.818 hybrid contribution 0.621 -0.907 -0.946 1.450 sum -7.594 0.345 7.458 10.649 Atomic orbital electron populations 1.21846 0.92897 1.02426 1.02317 1.20587 0.97349 0.95275 0.95368 1.22111 1.00646 0.96127 1.02654 1.21967 0.89854 1.00110 0.98072 1.21554 0.99477 0.95998 1.00781 1.23913 1.02153 0.97984 0.97332 1.21590 0.91864 0.98911 0.92224 0.86653 1.54864 1.24794 1.82545 1.21624 1.00502 0.72339 0.74084 0.71797 1.93436 1.86142 1.70624 1.48644 1.93510 1.77749 1.82613 1.45410 1.30169 1.30171 1.22264 1.04841 1.20770 0.90561 0.97006 0.93364 1.21022 1.10782 0.94083 1.00798 1.21309 0.92925 0.99180 0.92305 1.21456 1.10885 0.96890 0.99013 1.17260 0.86620 0.90657 0.91229 1.19862 1.17057 1.21461 0.90847 0.89698 1.26779 1.01258 0.94151 0.94343 1.69631 1.37929 1.34086 1.02459 0.85687 0.78420 0.79906 0.78038 1.16673 1.20124 1.18440 0.92352 0.91591 0.91405 0.92397 0.93882 0.91879 0.91015 0.91269 0.89326 0.92683 0.86541 0.88055 0.74850 0.85150 0.84205 0.84270 0.87097 0.88906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 7.98 71.98 0.57 -1.91 16 2 C -0.07 -1.60 2.49 -10.79 -0.03 -1.63 16 3 C -0.16 -3.77 7.58 71.98 0.55 -3.23 16 4 C -0.10 -2.40 2.52 -52.16 -0.13 -2.53 16 5 C -0.12 -2.39 9.36 71.98 0.67 -1.71 16 6 C -0.18 -4.49 9.08 30.62 0.28 -4.21 16 7 C 0.06 1.94 6.11 44.99 0.27 2.22 16 8 H 0.12 3.69 8.14 -2.38 -0.02 3.67 16 9 N -1.08 -40.30 3.89 -169.40 -0.66 -40.96 16 10 S 2.72 121.16 4.96 -56.49 -0.28 120.88 16 11 O -1.00 -44.48 16.76 -128.00 -2.15 -46.62 16 12 O -1.00 -52.59 16.56 -128.00 -2.12 -54.71 16 13 C -0.78 -36.07 5.91 22.73 0.13 -35.94 16 14 C 0.00 0.11 9.54 22.22 0.21 0.32 16 15 C -0.25 -9.06 10.05 22.46 0.23 -8.83 16 16 C -0.04 -1.48 10.02 22.22 0.22 -1.25 16 17 C -0.26 -11.79 7.15 22.73 0.16 -11.63 16 18 C 0.15 7.29 5.13 -21.29 -0.11 7.18 16 19 C -0.46 -24.81 8.10 23.46 0.19 -24.62 16 20 H 0.09 4.65 6.11 -2.91 -0.02 4.63 16 21 C 0.05 2.78 5.45 85.26 0.47 3.25 16 22 N -0.82 -42.65 13.93 21.82 0.30 -42.34 16 23 Si 0.96 41.60 24.45 68.60 1.68 43.27 16 24 H -0.24 -9.45 6.49 99.48 0.65 -8.80 16 25 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 26 H -0.26 -11.96 6.90 99.48 0.69 -11.27 16 27 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.07 1.11 6.61 -2.38 -0.02 1.09 16 29 H 0.07 1.06 8.11 -2.39 -0.02 1.04 16 30 H 0.06 1.61 7.62 -2.39 -0.02 1.59 16 31 H 0.04 1.20 5.48 -2.39 -0.01 1.19 16 32 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.07 1.50 7.22 -2.38 -0.02 1.49 16 34 H 0.07 1.20 7.90 -2.38 -0.02 1.19 16 35 H 0.09 1.41 5.61 -2.39 -0.01 1.39 16 36 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.12 2.50 8.05 -2.39 -0.02 2.49 16 38 H 0.10 2.68 5.82 -2.38 -0.01 2.67 16 39 H 0.41 15.17 6.42 -96.75 -0.62 14.55 16 40 H 0.13 4.83 7.32 -2.91 -0.02 4.81 16 41 H 0.14 4.05 8.06 -2.91 -0.02 4.03 16 42 H 0.14 4.14 8.06 -2.91 -0.02 4.12 16 43 H 0.11 4.84 4.37 -2.91 -0.01 4.82 16 44 H 0.30 13.99 8.30 -92.71 -0.77 13.22 16 Total: -1.00 -64.97 351.11 0.79 -64.18 By element: Atomic # 1 Polarization: 40.52 SS G_CDS: 0.32 Total: 40.84 kcal Atomic # 6 Polarization: -88.23 SS G_CDS: 3.69 Total: -84.53 kcal Atomic # 7 Polarization: -82.94 SS G_CDS: -0.35 Total: -83.30 kcal Atomic # 8 Polarization: -97.07 SS G_CDS: -4.27 Total: -101.34 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 1.68 Total: 43.27 kcal Atomic # 16 Polarization: 121.16 SS G_CDS: -0.28 Total: 120.88 kcal Total: -64.97 0.79 -64.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601436318.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.005 kcal (2) G-P(sol) polarization free energy of solvation -64.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds