Wall clock time and date at job start Tue Mar 31 2020 13:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47200 * 2 1 4 4 C 1.53003 * 109.47217 * 120.00191 * 2 1 3 5 5 C 1.53001 * 115.54643 * 325.67011 * 4 2 1 6 6 C 1.52996 * 117.50239 * 111.38198 * 4 2 1 7 7 C 1.52993 * 60.00316 * 107.48605 * 6 4 2 8 8 H 1.08998 * 117.51484 * 107.47826 * 7 6 4 9 9 N 1.46491 * 117.50508 * 252.51100 * 7 6 4 10 10 S 1.65599 * 120.00554 * 213.66434 * 9 7 6 11 11 O 1.42105 * 106.39932 * 310.83171 * 10 9 7 12 12 O 1.42094 * 106.40445 * 177.90857 * 10 9 7 13 13 C 1.76197 * 107.21629 * 64.36848 * 10 9 7 14 14 C 1.37638 * 120.12927 * 244.32834 * 13 10 9 15 15 C 1.38615 * 120.24979 * 180.02562 * 14 13 10 16 16 C 1.38657 * 120.50324 * 0.02562 * 15 14 13 17 17 C 1.37603 * 120.24493 * 359.97438 * 16 15 14 18 18 C 1.40698 * 120.12809 * 64.35175 * 13 10 9 19 19 C 1.41393 * 120.24407 * 359.97438 * 18 13 10 20 20 H 1.07999 * 120.00043 * 330.77580 * 19 18 13 21 21 C 1.39941 * 119.99941 * 150.77410 * 19 18 13 22 22 N 1.30828 * 119.99965 * 161.78073 * 21 19 18 23 23 Si 1.86799 * 120.00239 * 341.77878 * 21 19 18 24 24 H 1.48505 * 109.47158 * 95.21227 * 23 21 19 25 25 H 1.48501 * 109.47204 * 215.21273 * 23 21 19 26 26 H 1.48495 * 109.47115 * 335.21323 * 23 21 19 27 27 H 1.08999 * 109.47556 * 299.99701 * 1 2 3 28 28 H 1.08998 * 109.47208 * 60.00173 * 1 2 3 29 29 H 1.09002 * 109.46972 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47556 * 240.00299 * 2 1 3 31 31 H 1.09006 * 109.47003 * 59.99838 * 3 2 1 32 32 H 1.08994 * 109.47330 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47303 * 300.00660 * 3 2 1 34 34 H 1.08999 * 109.47265 * 274.33030 * 5 4 2 35 35 H 1.08997 * 109.47231 * 34.33118 * 5 4 2 36 36 H 1.09002 * 109.47029 * 154.33427 * 5 4 2 37 37 H 1.09007 * 117.49396 * 359.97438 * 6 4 2 38 38 H 1.08996 * 117.49716 * 214.98407 * 6 4 2 39 39 H 0.97010 * 119.99761 * 33.65947 * 9 7 6 40 40 H 1.07999 * 119.87736 * 0.03812 * 14 13 10 41 41 H 1.08005 * 119.74917 * 180.27870 * 15 14 13 42 42 H 1.07998 * 119.87691 * 179.97438 * 16 15 14 43 43 H 1.08001 * 120.12224 * 179.97438 * 17 16 15 44 44 H 0.97003 * 120.00141 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.1852 -0.5482 2.5063 6 6 2.7420 -2.0662 1.0514 7 6 3.5550 -0.8281 1.4343 8 1 3.9427 -0.7750 2.4516 9 7 4.4062 -0.2318 0.4018 10 16 5.8439 0.4753 0.8205 11 8 5.5600 1.3513 1.9029 12 8 6.4466 0.9074 -0.3915 13 6 6.8808 -0.7942 1.4669 14 6 7.2815 -0.7557 2.7831 15 6 8.0977 -1.7528 3.2940 16 6 8.5201 -2.7987 2.4875 17 6 8.1319 -2.8575 1.1687 18 6 7.3029 -1.8509 0.6394 19 6 6.8975 -1.9010 -0.7143 20 1 5.9538 -1.4682 -1.0118 21 6 7.7192 -2.5113 -1.6686 22 7 7.2214 -2.8795 -2.8211 23 14 9.5270 -2.8002 -1.2970 24 1 9.7117 -4.1801 -0.7800 25 1 10.3216 -2.6266 -2.5395 26 1 9.9847 -1.8238 -0.2762 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.1299 1.4425 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.4776 0.3668 3.0214 35 1 0.1339 -0.4867 2.2252 36 1 1.3351 -1.4013 3.1680 37 1 2.8401 -2.4374 0.0312 38 1 2.5947 -2.8282 1.8168 39 1 4.1278 -0.2513 -0.5272 40 1 6.9587 0.0543 3.4203 41 1 8.4036 -1.7171 4.3292 42 1 9.1562 -3.5700 2.8960 43 1 8.4624 -3.6728 0.5423 44 1 7.7908 -3.3029 -3.4824 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601436319.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:04 Heat of formation + Delta-G solvation = -60.402444 kcal Electronic energy + Delta-G solvation = -26623.395914 eV Core-core repulsion = 23053.009194 eV Total energy + Delta-G solvation = -3570.386720 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.26506 -39.58769 -38.05991 -36.71705 -35.69588 -34.99523 -33.15849 -32.46459 -31.80917 -28.94891 -27.69848 -27.21252 -23.78446 -23.54044 -23.05908 -22.84769 -20.39435 -19.57850 -19.41592 -18.71608 -18.02542 -17.30889 -17.10514 -16.30226 -15.91191 -15.76224 -15.43343 -15.27390 -14.93778 -14.72852 -14.59954 -14.30444 -14.02025 -13.71919 -13.61889 -13.32071 -13.10082 -13.03478 -12.97060 -12.92462 -12.75577 -12.69958 -12.58003 -12.51146 -12.28821 -12.16972 -11.98305 -11.87029 -11.73522 -11.39792 -11.25281 -11.03362 -10.57384 -9.97187 -9.62599 -9.59110 -9.06172 -6.72170 -0.23393 0.33869 0.77510 1.19830 1.34824 1.42506 2.02698 2.23560 2.49629 2.82515 2.98696 3.31500 3.69948 3.74623 3.91510 3.96309 4.11702 4.16324 4.24082 4.31761 4.41234 4.48724 4.61624 4.63396 4.70423 4.86447 4.90146 4.95756 4.98870 5.02875 5.07133 5.09642 5.17301 5.23266 5.27487 5.37214 5.38556 5.41385 5.50678 5.55588 5.64470 5.65900 5.82849 6.00475 6.10512 6.22799 6.48410 6.67123 7.98526 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014872 B = 0.005241 C = 0.004735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.326060 B = 5341.527566 C = 5911.375503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.060 4.060 3 C -0.156 4.156 4 C -0.113 4.113 5 C -0.120 4.120 6 C -0.175 4.175 7 C 0.080 3.920 8 H 0.129 0.871 9 N -1.076 6.076 10 S 2.717 3.283 11 O -1.000 7.000 12 O -1.001 7.001 13 C -0.783 4.783 14 C 0.002 3.998 15 C -0.249 4.249 16 C -0.040 4.040 17 C -0.259 4.259 18 C 0.148 3.852 19 C -0.464 4.464 20 H 0.087 0.913 21 C 0.057 3.943 22 N -0.812 5.812 23 Si 0.951 3.049 24 H -0.244 1.244 25 H -0.274 1.274 26 H -0.259 1.259 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.039 0.961 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.085 0.915 36 H 0.066 0.934 37 H 0.088 0.912 38 H 0.113 0.887 39 H 0.416 0.584 40 H 0.130 0.870 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.108 0.892 44 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.301 -0.171 7.370 11.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.079 4.079 3 C -0.213 4.213 4 C -0.115 4.115 5 C -0.177 4.177 6 C -0.215 4.215 7 C -0.028 4.028 8 H 0.147 0.853 9 N -0.832 5.832 10 S 2.813 3.187 11 O -0.990 6.990 12 O -0.991 6.991 13 C -0.877 4.877 14 C -0.018 4.018 15 C -0.269 4.269 16 C -0.058 4.058 17 C -0.278 4.278 18 C 0.143 3.857 19 C -0.491 4.491 20 H 0.105 0.895 21 C -0.163 4.163 22 N -0.435 5.435 23 Si 0.774 3.226 24 H -0.168 1.168 25 H -0.200 1.200 26 H -0.183 1.183 27 H 0.089 0.911 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.058 0.942 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.104 0.896 36 H 0.085 0.915 37 H 0.106 0.894 38 H 0.132 0.868 39 H 0.252 0.748 40 H 0.148 0.852 41 H 0.157 0.843 42 H 0.156 0.844 43 H 0.126 0.874 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.079 0.669 7.140 11.569 hybrid contribution 0.992 -0.919 -0.770 1.556 sum -8.086 -0.250 6.370 10.297 Atomic orbital electron populations 1.21855 0.93165 1.02236 1.02378 1.20612 0.97065 0.95157 0.95082 1.21981 1.00851 0.96356 1.02156 1.22127 0.92360 0.98643 0.98417 1.21519 0.99925 1.02223 0.93996 1.23685 1.02975 0.91555 1.03244 1.21521 0.89424 1.00600 0.91270 0.85297 1.54941 1.36131 1.75896 1.16239 1.00488 0.72493 0.73550 0.72155 1.93443 1.85136 1.63801 1.56665 1.93506 1.76504 1.81779 1.47355 1.30143 1.30706 1.20771 1.06031 1.20756 0.92271 0.96588 0.92191 1.21000 1.07033 0.98048 1.00777 1.21299 0.94786 0.96818 0.92914 1.21361 1.08266 1.01083 0.97095 1.17218 0.88083 0.88470 0.91880 1.19863 1.06525 1.31103 0.91658 0.89514 1.26765 1.04799 0.90552 0.94169 1.69655 1.40139 1.26802 1.06924 0.85718 0.77425 0.80863 0.78567 1.16839 1.20030 1.18276 0.91139 0.92352 0.92073 0.92247 0.91998 0.94175 0.91965 0.92231 0.89634 0.91515 0.89370 0.86832 0.74784 0.85200 0.84311 0.84389 0.87405 0.88848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 8.20 71.98 0.59 -1.91 16 2 C -0.06 -1.43 2.38 -10.79 -0.03 -1.46 16 3 C -0.16 -4.03 8.92 71.98 0.64 -3.39 16 4 C -0.11 -2.75 1.91 -52.18 -0.10 -2.85 16 5 C -0.12 -2.29 9.49 71.98 0.68 -1.61 16 6 C -0.18 -4.71 9.75 30.59 0.30 -4.42 16 7 C 0.08 2.47 5.98 44.99 0.27 2.74 16 8 H 0.13 3.95 8.11 -2.39 -0.02 3.93 16 9 N -1.08 -39.53 2.92 -169.41 -0.50 -40.03 16 10 S 2.72 119.70 4.93 -56.49 -0.28 119.42 16 11 O -1.00 -44.21 16.74 -128.00 -2.14 -46.35 16 12 O -1.00 -51.76 16.64 -128.00 -2.13 -53.89 16 13 C -0.78 -35.86 5.92 22.73 0.13 -35.73 16 14 C 0.00 0.06 9.53 22.22 0.21 0.28 16 15 C -0.25 -9.12 10.05 22.46 0.23 -8.90 16 16 C -0.04 -1.51 10.02 22.22 0.22 -1.29 16 17 C -0.26 -11.56 7.17 22.73 0.16 -11.39 16 18 C 0.15 7.28 5.12 -21.29 -0.11 7.17 16 19 C -0.46 -24.42 8.15 23.46 0.19 -24.23 16 20 H 0.09 4.65 5.94 -2.91 -0.02 4.63 16 21 C 0.06 2.92 5.41 85.25 0.46 3.38 16 22 N -0.81 -41.66 13.93 21.83 0.30 -41.36 16 23 Si 0.95 41.15 24.50 68.60 1.68 42.83 16 24 H -0.24 -9.50 6.69 99.48 0.67 -8.83 16 25 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 26 H -0.26 -11.85 6.85 99.48 0.68 -11.17 16 27 H 0.07 1.11 6.45 -2.39 -0.02 1.10 16 28 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.06 1.53 7.63 -2.39 -0.02 1.52 16 31 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 32 H 0.04 1.22 5.55 -2.39 -0.01 1.21 16 33 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.08 1.33 5.58 -2.39 -0.01 1.32 16 36 H 0.07 1.15 7.90 -2.39 -0.02 1.13 16 37 H 0.09 2.59 8.05 -2.38 -0.02 2.57 16 38 H 0.11 2.64 8.05 -2.39 -0.02 2.62 16 39 H 0.42 14.95 7.38 -96.74 -0.71 14.23 16 40 H 0.13 4.77 7.33 -2.91 -0.02 4.75 16 41 H 0.14 4.03 8.06 -2.91 -0.02 4.01 16 42 H 0.14 4.13 8.06 -2.91 -0.02 4.10 16 43 H 0.11 4.69 4.64 -2.91 -0.01 4.68 16 44 H 0.30 13.77 8.30 -92.71 -0.77 13.00 16 Total: -1.00 -63.73 356.06 1.03 -62.69 By element: Atomic # 1 Polarization: 40.05 SS G_CDS: 0.24 Total: 40.29 kcal Atomic # 6 Polarization: -87.47 SS G_CDS: 3.86 Total: -83.61 kcal Atomic # 7 Polarization: -81.20 SS G_CDS: -0.19 Total: -81.39 kcal Atomic # 8 Polarization: -95.96 SS G_CDS: -4.27 Total: -100.24 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 1.68 Total: 42.83 kcal Atomic # 16 Polarization: 119.70 SS G_CDS: -0.28 Total: 119.42 kcal Total: -63.73 1.03 -62.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601436319.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.290 kcal (2) G-P(sol) polarization free energy of solvation -63.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds