Wall clock time and date at job start Tue Mar 31 2020 13:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47028 * 2 1 4 4 C 1.53000 * 109.47559 * 120.00255 * 2 1 3 5 5 C 1.53004 * 115.54652 * 319.01157 * 4 2 1 6 6 C 1.53000 * 117.51612 * 104.70545 * 4 2 1 7 7 C 1.52995 * 117.49921 * 173.34014 * 4 2 1 8 8 H 1.08998 * 117.49880 * 359.97438 * 7 4 2 9 9 N 1.46495 * 117.50025 * 145.00193 * 7 4 2 10 10 S 1.65605 * 120.00064 * 215.11179 * 9 7 4 11 11 O 1.42100 * 106.39616 * 311.88523 * 10 9 7 12 12 O 1.42099 * 106.40071 * 178.96587 * 10 9 7 13 13 C 1.76194 * 107.21697 * 65.42339 * 10 9 7 14 14 C 1.37641 * 120.12885 * 243.98344 * 13 10 9 15 15 C 1.38612 * 120.24876 * 179.97438 * 14 13 10 16 16 C 1.38654 * 120.50219 * 0.02562 * 15 14 13 17 17 C 1.37596 * 120.24857 * 359.97438 * 16 15 14 18 18 C 1.40700 * 120.12787 * 63.96891 * 13 10 9 19 19 C 1.41395 * 120.24320 * 359.97438 * 18 13 10 20 20 H 1.07996 * 119.99827 * 331.49893 * 19 18 13 21 21 C 1.39943 * 119.99553 * 151.50594 * 19 18 13 22 22 N 1.30826 * 119.99563 * 162.94605 * 21 19 18 23 23 Si 1.86795 * 120.00642 * 342.94190 * 21 19 18 24 24 H 1.48503 * 109.47182 * 90.60604 * 23 21 19 25 25 H 1.48498 * 109.47338 * 210.61075 * 23 21 19 26 26 H 1.48499 * 109.46804 * 330.61107 * 23 21 19 27 27 H 1.08999 * 109.47088 * 59.99460 * 1 2 3 28 28 H 1.08995 * 109.47018 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47172 * 299.99476 * 1 2 3 30 30 H 1.09005 * 109.47021 * 240.00673 * 2 1 3 31 31 H 1.09005 * 109.47350 * 185.30218 * 3 2 1 32 32 H 1.09000 * 109.47399 * 305.30590 * 3 2 1 33 33 H 1.09007 * 109.47295 * 65.30056 * 3 2 1 34 34 H 1.09005 * 109.46619 * 274.32383 * 5 4 2 35 35 H 1.08997 * 109.47365 * 34.32540 * 5 4 2 36 36 H 1.09001 * 109.46599 * 154.32823 * 5 4 2 37 37 H 1.08998 * 117.50149 * 359.97438 * 6 4 2 38 38 H 1.08997 * 117.50064 * 214.97053 * 6 4 2 39 39 H 0.96998 * 119.99930 * 35.10405 * 9 7 4 40 40 H 1.08005 * 119.87462 * 359.97438 * 14 13 10 41 41 H 1.08001 * 119.75096 * 180.02562 * 15 14 13 42 42 H 1.07999 * 119.87550 * 180.28027 * 16 15 14 43 43 H 1.08004 * 120.12612 * 179.97438 * 17 16 15 44 44 H 0.97006 * 120.00441 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.2777 -0.4219 2.5415 6 6 2.6005 -2.1337 1.0705 7 6 3.5465 -0.9659 1.3581 8 1 4.1740 -0.6134 0.5396 9 7 4.1485 -0.8957 2.6917 10 16 5.6786 -0.2904 2.8787 11 8 6.4864 -0.9334 1.9024 12 8 5.9597 -0.3334 4.2710 13 6 5.6231 1.4138 2.4347 14 6 6.3370 1.8685 1.3493 15 6 6.2948 3.2085 0.9974 16 6 5.5352 4.1056 1.7327 17 6 4.8135 3.6734 2.8216 18 6 4.8486 2.3150 3.1880 19 6 4.1104 1.8592 4.3045 20 1 3.7516 0.8411 4.3354 21 6 3.8447 2.7275 5.3693 22 7 2.9042 2.4370 6.2311 23 14 4.8329 4.3011 5.5605 24 1 4.1533 5.4037 4.8340 25 1 4.9379 4.6478 7.0006 26 1 6.1931 4.1026 4.9986 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 3.1259 1.4440 -0.0950 32 1 1.6011 1.9831 -0.8386 33 1 1.7562 1.9282 0.9337 34 1 1.6833 0.4788 3.0022 35 1 0.2226 -0.2702 2.3141 36 1 1.3843 -1.2612 3.2288 37 1 2.6055 -2.5495 0.0630 38 1 2.4262 -2.8496 1.8737 39 1 3.6509 -1.2037 3.4653 40 1 6.9324 1.1785 0.7696 41 1 6.8578 3.5566 0.1440 42 1 5.5059 5.1467 1.4468 43 1 4.2228 4.3739 3.3932 44 1 2.7196 3.0390 6.9690 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601436320.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:08 Heat of formation + Delta-G solvation = -47.182026 kcal Electronic energy + Delta-G solvation = -27084.883636 eV Core-core repulsion = 23515.070196 eV Total energy + Delta-G solvation = -3569.813440 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -38.99493 -37.86374 -36.27101 -34.89777 -34.25976 -33.86025 -31.15981 -30.66837 -30.11122 -28.16088 -26.73695 -25.42695 -22.33763 -22.06665 -21.74769 -21.16003 -18.78310 -18.21016 -17.76325 -17.08963 -16.41248 -15.79139 -15.35464 -15.06863 -14.54268 -14.23690 -13.99402 -13.77449 -13.51470 -13.21902 -12.82534 -12.71995 -12.54075 -12.33272 -12.25944 -11.97396 -11.89654 -11.57995 -11.34065 -11.27366 -11.17937 -11.13596 -11.10306 -10.93282 -10.89473 -10.81115 -10.66364 -10.42631 -10.30385 -9.97355 -9.55914 -9.40352 -9.24909 -8.36320 -8.25584 -7.86112 -7.24981 -4.87593 1.44984 2.07693 2.51916 2.95019 3.07163 3.17896 3.75935 3.82243 4.04337 4.25683 4.67348 4.87448 4.93934 5.01740 5.11667 5.20178 5.43593 5.48588 5.54268 5.65962 5.68107 5.83237 5.88285 5.92349 5.97056 6.05556 6.09324 6.15041 6.16484 6.19659 6.30832 6.39000 6.46075 6.52772 6.58192 6.65630 6.67718 6.82973 6.91865 7.08965 7.24074 7.37178 7.53087 7.57967 7.78777 8.02546 8.26126 8.48037 9.74040 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011341 B = 0.006482 C = 0.005989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.267324 B = 4318.562326 C = 4674.055922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.055 4.055 3 C -0.146 4.146 4 C -0.124 4.124 5 C -0.121 4.121 6 C -0.187 4.187 7 C 0.111 3.889 8 H 0.130 0.870 9 N -1.087 6.087 10 S 2.702 3.298 11 O -0.995 6.995 12 O -0.961 6.961 13 C -0.768 4.768 14 C 0.018 3.982 15 C -0.261 4.261 16 C -0.041 4.041 17 C -0.240 4.240 18 C 0.164 3.836 19 C -0.426 4.426 20 H 0.103 0.897 21 C 0.090 3.910 22 N -0.777 5.777 23 Si 0.915 3.085 24 H -0.266 1.266 25 H -0.286 1.286 26 H -0.242 1.242 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.047 0.953 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.061 0.939 36 H 0.051 0.949 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.414 0.586 40 H 0.112 0.888 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.108 0.892 44 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.709 -2.309 -7.948 9.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.074 4.074 3 C -0.203 4.203 4 C -0.126 4.126 5 C -0.178 4.178 6 C -0.227 4.227 7 C 0.001 3.999 8 H 0.147 0.853 9 N -0.839 5.839 10 S 2.799 3.201 11 O -0.985 6.985 12 O -0.952 6.952 13 C -0.862 4.862 14 C -0.002 4.002 15 C -0.281 4.281 16 C -0.060 4.060 17 C -0.259 4.259 18 C 0.159 3.841 19 C -0.453 4.453 20 H 0.121 0.879 21 C -0.133 4.133 22 N -0.398 5.398 23 Si 0.741 3.259 24 H -0.193 1.193 25 H -0.213 1.213 26 H -0.165 1.165 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.248 0.752 40 H 0.130 0.870 41 H 0.117 0.883 42 H 0.116 0.884 43 H 0.125 0.875 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.031 -2.783 -7.526 8.979 hybrid contribution -0.322 1.282 0.294 1.354 sum -4.353 -1.501 -7.232 8.573 Atomic orbital electron populations 1.21874 0.95351 1.01362 1.01611 1.20617 0.95402 0.96212 0.95162 1.21800 1.01516 0.95157 1.01830 1.21988 0.96027 0.97359 0.97244 1.21406 0.99452 1.02718 0.94247 1.23659 1.04655 0.91724 1.02638 1.21234 0.90982 1.02087 0.85563 0.85289 1.55219 1.36718 1.79336 1.12667 1.01103 0.71656 0.74302 0.73070 1.93463 1.66498 1.75411 1.63173 1.93565 1.82436 1.87626 1.31551 1.29887 1.19624 1.22320 1.14417 1.20388 0.92349 0.95507 0.91966 1.20462 1.09282 0.93903 1.04485 1.20806 0.93642 0.97470 0.94088 1.21246 1.06930 0.96623 1.01131 1.17001 0.86243 0.90760 0.90138 1.19795 1.25645 1.00464 0.99389 0.87937 1.26175 0.93028 0.99560 0.94573 1.69635 1.22312 1.36802 1.11076 0.86313 0.82849 0.79928 0.76815 1.19257 1.21322 1.16500 0.93160 0.92941 0.92009 0.91553 0.92255 0.93385 0.91909 0.90350 0.92059 0.93029 0.88598 0.88713 0.75197 0.86991 0.88254 0.88426 0.87462 0.89707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 8.47 37.16 0.31 -1.28 16 2 C -0.06 -0.69 2.89 -90.62 -0.26 -0.95 16 3 C -0.15 -2.05 9.03 37.16 0.34 -1.71 16 4 C -0.12 -1.70 1.77 -154.51 -0.27 -1.98 16 5 C -0.12 -1.77 8.70 37.16 0.32 -1.44 16 6 C -0.19 -2.40 9.75 -26.73 -0.26 -2.66 16 7 C 0.11 1.72 5.87 -67.93 -0.40 1.32 16 8 H 0.13 2.01 8.06 -51.93 -0.42 1.59 16 9 N -1.09 -19.33 4.75 -4.89 -0.02 -19.35 16 10 S 2.70 57.89 4.94 -107.50 -0.53 57.36 16 11 O -1.00 -22.05 16.70 -57.17 -0.95 -23.01 16 12 O -0.96 -23.71 16.66 -57.17 -0.95 -24.66 16 13 C -0.77 -17.25 5.94 -38.87 -0.23 -17.48 16 14 C 0.02 0.37 9.53 -39.66 -0.38 -0.01 16 15 C -0.26 -5.17 10.05 -39.29 -0.39 -5.57 16 16 C -0.04 -0.84 10.02 -39.66 -0.40 -1.24 16 17 C -0.24 -5.39 7.24 -38.87 -0.28 -5.68 16 18 C 0.16 3.89 5.15 -106.82 -0.55 3.34 16 19 C -0.43 -10.53 8.20 -37.74 -0.31 -10.84 16 20 H 0.10 2.52 5.85 -52.49 -0.31 2.21 16 21 C 0.09 2.20 5.43 -17.34 -0.09 2.11 16 22 N -0.78 -18.88 13.93 55.55 0.77 -18.11 16 23 Si 0.91 19.89 24.48 -169.99 -4.16 15.72 16 24 H -0.27 -5.46 6.47 56.52 0.37 -5.09 16 25 H -0.29 -5.98 7.11 56.52 0.40 -5.58 16 26 H -0.24 -5.53 6.97 56.52 0.39 -5.14 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.71 6.32 -51.93 -0.33 0.38 16 30 H 0.07 0.77 7.96 -51.93 -0.41 0.35 16 31 H 0.06 0.90 8.00 -51.93 -0.42 0.49 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.98 8.10 -51.93 -0.42 0.56 16 34 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 35 H 0.06 0.80 5.62 -51.93 -0.29 0.51 16 36 H 0.05 0.72 7.63 -51.93 -0.40 0.32 16 37 H 0.10 1.07 8.09 -51.93 -0.42 0.65 16 38 H 0.09 1.16 8.05 -51.93 -0.42 0.75 16 39 H 0.41 6.95 7.82 -34.47 -0.27 6.68 16 40 H 0.11 2.16 7.33 -52.48 -0.38 1.77 16 41 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 42 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 43 H 0.11 2.36 4.33 -52.48 -0.23 2.14 16 44 H 0.29 6.42 8.30 -40.82 -0.34 6.08 16 LS Contribution 360.19 15.07 5.43 5.43 Total: -1.00 -28.47 360.19 -9.70 -38.18 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: -6.43 Total: 12.50 kcal Atomic # 6 Polarization: -41.20 SS G_CDS: -2.86 Total: -44.06 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.75 Total: -37.46 kcal Atomic # 8 Polarization: -45.76 SS G_CDS: -1.91 Total: -47.67 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -4.16 Total: 15.72 kcal Atomic # 16 Polarization: 57.89 SS G_CDS: -0.53 Total: 57.36 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -28.47 -9.70 -38.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601436320.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.007 kcal (2) G-P(sol) polarization free energy of solvation -28.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds