Wall clock time and date at job start Tue Mar 31 2020 14:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35897 * 116.99928 * 2 1 4 4 C 1.38752 * 120.05863 * 359.97438 * 3 2 1 5 5 C 1.38122 * 119.94862 * 180.02562 * 4 3 2 6 6 C 1.38291 * 120.05358 * 359.97438 * 5 4 3 7 7 C 1.38251 * 120.11088 * 359.97438 * 6 5 4 8 8 C 1.38163 * 120.05527 * 0.28334 * 7 6 5 9 9 C 1.50693 * 120.02868 * 179.74173 * 8 7 6 10 10 C 1.53003 * 109.47631 * 119.99597 * 9 8 7 11 11 C 1.53002 * 109.47254 * 239.99536 * 9 8 7 12 12 C 1.53001 * 109.47223 * 359.97438 * 9 8 7 13 13 N 1.46505 * 109.47362 * 180.02562 * 12 9 8 14 14 C 1.34774 * 119.99958 * 179.97438 * 13 12 9 15 15 O 1.21288 * 120.00077 * 0.02562 * 14 13 12 16 16 C 1.50699 * 120.00146 * 179.97438 * 14 13 12 17 17 S 1.80995 * 109.47459 * 180.02562 * 16 14 13 18 18 C 1.76197 * 100.00315 * 180.02562 * 17 16 14 19 19 H 1.08001 * 119.99477 * 0.02562 * 18 17 16 20 20 C 1.38796 * 120.00214 * 180.02562 * 18 17 16 21 21 N 1.31622 * 119.99926 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00102 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47070 * 89.99549 * 22 20 18 24 24 H 1.48495 * 109.47200 * 210.00051 * 22 20 18 25 25 H 1.48504 * 109.46882 * 329.99995 * 22 20 18 26 26 H 1.08999 * 109.47330 * 300.00551 * 1 2 3 27 27 H 1.09009 * 109.46967 * 60.00302 * 1 2 3 28 28 H 1.08996 * 109.47562 * 179.97438 * 1 2 3 29 29 H 1.07998 * 120.02575 * 0.02562 * 4 3 2 30 30 H 1.08000 * 119.97839 * 180.02562 * 5 4 3 31 31 H 1.07998 * 119.94616 * 180.02562 * 6 5 4 32 32 H 1.08002 * 119.96904 * 179.97438 * 7 6 5 33 33 H 1.08997 * 109.46786 * 60.00110 * 10 9 8 34 34 H 1.08995 * 109.47250 * 180.02562 * 10 9 8 35 35 H 1.09001 * 109.46620 * 300.00309 * 10 9 8 36 36 H 1.09006 * 109.46604 * 59.99939 * 11 9 8 37 37 H 1.09004 * 109.47332 * 179.97438 * 11 9 8 38 38 H 1.08997 * 109.47364 * 300.00014 * 11 9 8 39 39 H 1.09001 * 109.47296 * 299.99999 * 12 9 8 40 40 H 1.08995 * 109.46982 * 60.00185 * 12 9 8 41 41 H 0.97000 * 119.99512 * 0.02562 * 13 12 9 42 42 H 1.09001 * 109.46822 * 300.00643 * 16 14 13 43 43 H 1.08998 * 109.46496 * 60.00030 * 16 14 13 44 44 H 0.97005 * 120.00105 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9208 3.6048 -0.0011 6 6 3.3019 3.6758 -0.0005 7 6 4.0560 2.5171 0.0011 8 6 3.4311 1.2848 -0.0038 9 6 4.2537 0.0222 -0.0079 10 6 3.9272 -0.8034 1.2382 11 6 3.9284 -0.7944 -1.2603 12 6 5.7407 0.3822 -0.0064 13 7 6.5404 -0.8453 -0.0110 14 6 7.8862 -0.7728 -0.0111 15 8 8.4353 0.3087 -0.0070 16 6 8.7089 -2.0354 -0.0153 17 16 10.4680 -1.6095 -0.0137 18 6 11.1738 -3.2239 -0.0198 19 1 10.5330 -4.0933 -0.0236 20 6 12.5531 -3.3783 -0.0199 21 7 13.3340 -2.3187 -0.0158 22 14 13.3014 -5.0899 -0.0257 23 1 13.5001 -5.5385 -1.4273 24 1 14.6103 -5.0603 0.6749 25 1 12.3884 -6.0316 0.6707 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 0.2128 2.3203 -0.0005 30 1 1.3340 4.5114 -0.0011 31 1 3.7922 4.6380 -0.0005 32 1 5.1344 2.5752 0.0011 33 1 2.8678 -1.0600 1.2367 34 1 4.5225 -1.7165 1.2354 35 1 4.1589 -0.2217 2.1304 36 1 4.1611 -0.2062 -2.1480 37 1 4.5237 -1.7075 -1.2635 38 1 2.8690 -1.0509 -1.2618 39 1 5.9731 0.9701 -0.8943 40 1 5.9727 0.9640 0.8856 41 1 6.1013 -1.7102 -0.0147 42 1 8.4768 -2.6232 0.8728 43 1 8.4764 -2.6175 -0.9071 44 1 14.2980 -2.4266 -0.0162 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604486448.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:30 Heat of formation + Delta-G solvation = -78.841345 kcal Electronic energy + Delta-G solvation = -24581.876489 eV Core-core repulsion = 21010.690198 eV Total energy + Delta-G solvation = -3571.186291 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.66777 -40.56804 -38.65462 -37.58730 -34.60058 -34.51094 -31.33047 -31.23865 -30.36755 -28.27829 -28.14600 -27.71370 -26.87326 -23.89813 -22.81746 -21.77625 -20.53156 -19.81545 -18.86693 -17.90457 -17.39014 -16.87422 -16.71701 -16.68143 -16.60552 -16.48324 -15.75999 -15.37324 -15.33959 -14.90270 -14.70085 -14.49317 -14.39575 -14.15402 -13.97730 -13.45715 -13.16801 -13.09810 -13.04933 -12.88464 -12.72304 -12.62344 -12.58127 -12.35982 -12.01388 -11.87204 -11.74218 -11.67581 -11.37209 -11.13493 -10.95913 -10.26595 -10.12125 -9.80488 -9.04946 -8.65723 -8.33716 -6.11707 0.37369 0.51548 1.27597 1.43228 1.47681 1.58289 1.62469 2.26400 2.30582 2.41520 2.81348 3.00329 3.33029 3.59437 3.64288 3.96714 3.99226 4.02013 4.12095 4.19770 4.31137 4.34282 4.45966 4.49382 4.51751 4.55067 4.65414 4.65688 4.75580 4.81550 4.85620 4.94501 4.98207 5.01180 5.15183 5.30445 5.38496 5.40323 5.42844 5.50455 5.53277 5.65368 5.87896 6.20846 6.49375 6.50635 7.07472 7.24173 8.75529 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.029302 B = 0.002280 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.340669 B =12277.995980 C =13031.667013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.319 6.319 3 C 0.128 3.872 4 C -0.211 4.211 5 C -0.087 4.087 6 C -0.163 4.163 7 C -0.102 4.102 8 C -0.116 4.116 9 C -0.013 4.013 10 C -0.138 4.138 11 C -0.138 4.138 12 C 0.132 3.868 13 N -0.709 5.709 14 C 0.533 3.467 15 O -0.566 6.566 16 C -0.129 4.129 17 S -0.151 6.151 18 C -0.545 4.545 19 H 0.083 0.917 20 C 0.012 3.988 21 N -0.912 5.912 22 Si 0.999 3.001 23 H -0.268 1.268 24 H -0.278 1.278 25 H -0.258 1.258 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.115 0.885 29 H 0.150 0.850 30 H 0.147 0.853 31 H 0.136 0.864 32 H 0.125 0.875 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.065 0.935 38 H 0.078 0.922 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.413 0.587 42 H 0.110 0.890 43 H 0.110 0.890 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.090 4.875 0.011 32.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.232 6.232 3 C 0.083 3.917 4 C -0.230 4.230 5 C -0.105 4.105 6 C -0.181 4.181 7 C -0.120 4.120 8 C -0.117 4.117 9 C -0.013 4.013 10 C -0.195 4.195 11 C -0.195 4.195 12 C 0.009 3.991 13 N -0.363 5.363 14 C 0.319 3.681 15 O -0.444 6.444 16 C -0.280 4.280 17 S 0.076 5.924 18 C -0.693 4.693 19 H 0.101 0.899 20 C -0.193 4.193 21 N -0.548 5.548 22 Si 0.821 3.179 23 H -0.193 1.193 24 H -0.203 1.203 25 H -0.182 1.182 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.134 0.866 29 H 0.167 0.833 30 H 0.165 0.835 31 H 0.154 0.846 32 H 0.143 0.857 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.252 0.748 42 H 0.128 0.872 43 H 0.128 0.872 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -30.973 6.534 0.023 31.655 hybrid contribution -0.057 -1.879 -0.016 1.879 sum -31.030 4.656 0.006 31.377 Atomic orbital electron populations 1.23320 0.77168 1.05350 1.02049 1.86112 1.22657 1.26132 1.88343 1.18818 0.91205 0.85148 0.96575 1.21507 1.01093 0.91976 1.08388 1.21263 0.94479 0.98013 0.96741 1.21309 0.94591 0.98627 1.03577 1.21194 1.00495 0.91861 0.98419 1.19111 0.91012 0.94693 1.06858 1.19419 0.90636 0.93338 0.97945 1.21889 1.03194 0.99190 0.95247 1.21887 1.03173 0.99252 0.95192 1.21496 0.89932 0.86375 1.01343 1.45780 1.04463 1.10703 1.75391 1.20076 0.82962 0.89916 0.75144 1.90687 1.72325 1.31175 1.50221 1.23367 0.98846 0.98995 1.06828 1.85580 0.96412 1.13359 1.97043 1.23203 0.94924 0.92399 1.58791 0.89885 1.26142 0.96548 1.02795 0.93780 1.70185 1.04926 1.31646 1.48046 0.84942 0.77514 0.76656 0.78791 1.19296 1.20320 1.18168 0.91909 0.91917 0.86645 0.83278 0.83501 0.84648 0.85685 0.90252 0.91654 0.93449 0.93439 0.91646 0.90290 0.92336 0.92331 0.74836 0.87188 0.87166 0.92011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 113.37 1.11 1.22 16 2 O -0.32 -4.67 6.16 -92.39 -0.57 -5.23 16 3 C 0.13 2.22 6.28 22.51 0.14 2.36 16 4 C -0.21 -3.01 9.04 22.37 0.20 -2.81 16 5 C -0.09 -1.24 10.04 22.25 0.22 -1.02 16 6 C -0.16 -2.82 10.04 22.29 0.22 -2.60 16 7 C -0.10 -2.11 8.97 22.26 0.20 -1.91 16 8 C -0.12 -2.33 4.77 -19.77 -0.09 -2.42 16 9 C -0.01 -0.25 0.51 -52.93 -0.03 -0.28 16 10 C -0.14 -2.48 8.08 71.98 0.58 -1.90 16 11 C -0.14 -2.48 8.09 71.98 0.58 -1.89 16 12 C 0.13 3.34 3.22 86.38 0.28 3.62 16 13 N -0.71 -19.17 4.96 -463.05 -2.30 -21.46 16 14 C 0.53 20.33 7.85 87.66 0.69 21.02 16 15 O -0.57 -26.94 15.86 -3.05 -0.05 -26.98 16 16 C -0.13 -5.21 6.16 71.24 0.44 -4.78 16 17 S -0.15 -8.51 20.57 -56.49 -1.16 -9.67 16 18 C -0.55 -31.41 9.50 67.95 0.65 -30.76 16 19 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 20 C 0.01 0.69 5.49 84.86 0.47 1.15 16 21 N -0.91 -56.51 13.22 21.65 0.29 -56.23 16 22 Si 1.00 43.91 29.55 68.60 2.03 45.94 16 23 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 24 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 25 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 26 H 0.06 0.35 7.66 -2.39 -0.02 0.33 16 27 H 0.06 0.35 7.66 -2.38 -0.02 0.33 16 28 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.15 1.33 6.30 -2.91 -0.02 1.31 16 30 H 0.15 1.30 8.06 -2.91 -0.02 1.27 16 31 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 32 H 0.13 2.75 5.89 -2.91 -0.02 2.73 16 33 H 0.08 1.33 6.12 -2.39 -0.01 1.31 16 34 H 0.06 1.06 6.86 -2.39 -0.02 1.04 16 35 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 37 H 0.06 1.06 6.86 -2.39 -0.02 1.04 16 38 H 0.08 1.32 6.16 -2.39 -0.01 1.31 16 39 H 0.06 1.62 7.51 -2.39 -0.02 1.60 16 40 H 0.06 1.62 7.51 -2.39 -0.02 1.61 16 41 H 0.41 8.54 6.16 -92.71 -0.57 7.96 16 42 H 0.11 3.99 8.14 -2.40 -0.02 3.97 16 43 H 0.11 3.99 8.14 -2.40 -0.02 3.97 16 44 H 0.27 15.57 8.31 -92.70 -0.77 14.80 16 Total: -1.00 -77.50 367.16 4.34 -73.16 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: 0.44 Total: 21.47 kcal Atomic # 6 Polarization: -26.64 SS G_CDS: 5.66 Total: -20.98 kcal Atomic # 7 Polarization: -75.68 SS G_CDS: -2.01 Total: -77.69 kcal Atomic # 8 Polarization: -31.60 SS G_CDS: -0.62 Total: -32.22 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: -8.51 SS G_CDS: -1.16 Total: -9.67 kcal Total: -77.50 4.34 -73.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604486448.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.683 kcal (2) G-P(sol) polarization free energy of solvation -77.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds