Wall clock time and date at job start Tue Mar 31 2020 13:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.50703 * 109.47299 * 2 1 4 4 C 1.38240 * 119.99789 * 257.43635 * 3 2 1 5 5 C 1.38237 * 119.99603 * 180.29420 * 4 3 2 6 6 C 1.38234 * 119.99732 * 359.69962 * 5 4 3 7 7 C 1.38224 * 120.00615 * 0.02562 * 6 5 4 8 8 C 1.50702 * 120.00398 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.47319 * 271.49078 * 8 7 6 10 10 C 1.38235 * 120.00010 * 77.18030 * 3 2 1 11 11 S 1.76192 * 120.00009 * 359.97438 * 10 3 2 12 12 O 1.42102 * 106.40371 * 130.40398 * 11 10 3 13 13 O 1.42100 * 106.40495 * 357.48629 * 11 10 3 14 14 N 1.65605 * 107.22211 * 243.94299 * 11 10 3 15 15 C 1.36932 * 119.99992 * 260.27929 * 14 11 10 16 16 H 1.07996 * 120.00120 * 131.45514 * 15 14 11 17 17 C 1.38819 * 119.99830 * 311.44811 * 15 14 11 18 18 N 1.31616 * 120.00077 * 349.03066 * 17 15 14 19 19 Si 1.86796 * 119.99719 * 169.03395 * 17 15 14 20 20 H 1.48499 * 109.47236 * 59.99948 * 19 17 15 21 21 H 1.48498 * 109.46907 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47060 * 299.99699 * 19 17 15 23 23 C 1.46498 * 119.99869 * 80.27584 * 14 11 10 24 24 C 1.52996 * 117.50199 * 181.71476 * 23 14 11 25 25 C 1.53000 * 117.50102 * 113.05346 * 23 14 11 26 26 H 1.09000 * 109.47584 * 56.28678 * 1 2 3 27 27 H 1.09005 * 109.47297 * 176.28276 * 1 2 3 28 28 H 1.09000 * 109.47333 * 296.28573 * 1 2 3 29 29 H 1.08996 * 109.47337 * 239.99618 * 2 1 3 30 30 H 1.09000 * 109.47296 * 120.00065 * 2 1 3 31 31 H 1.07994 * 119.99907 * 0.02562 * 4 3 2 32 32 H 1.07998 * 119.99645 * 179.72079 * 5 4 3 33 33 H 1.08010 * 119.99437 * 180.02562 * 6 5 4 34 34 H 1.08999 * 109.46640 * 31.49235 * 8 7 6 35 35 H 1.09001 * 109.47215 * 151.49252 * 8 7 6 36 36 H 1.09003 * 109.46840 * 308.15736 * 9 8 7 37 37 H 1.08999 * 109.46582 * 68.15313 * 9 8 7 38 38 H 1.09000 * 109.47213 * 188.15007 * 9 8 7 39 39 H 0.96998 * 120.00152 * 185.03702 * 18 17 15 40 40 H 1.09007 * 115.54883 * 327.38508 * 23 14 11 41 41 H 1.09003 * 117.49378 * 0.02562 * 24 23 14 42 42 H 1.09002 * 117.49954 * 145.01667 * 24 23 14 43 43 H 1.08999 * 117.49887 * 214.98134 * 25 23 14 44 44 H 1.09003 * 117.49515 * 359.97438 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.5082 1.9856 -1.1686 5 6 2.9747 3.2869 -1.1672 6 6 2.9594 4.0253 0.0013 7 6 2.4783 3.4625 1.1685 8 6 2.4622 4.2673 2.4425 9 6 3.7958 4.0940 3.1722 10 6 2.0123 2.1610 1.1673 11 16 1.3988 1.4435 2.6550 12 8 2.3760 1.6964 3.6552 13 8 0.9531 0.1374 2.3166 14 7 0.0500 2.2993 3.0922 15 6 0.1354 3.2646 4.0595 16 1 -0.2907 4.2418 3.8864 17 6 0.7695 2.9872 5.2629 18 7 1.0963 1.7484 5.5643 19 14 1.1590 4.3722 6.4543 20 1 -0.1010 5.0454 6.8596 21 1 1.8327 3.8169 7.6555 22 1 2.0555 5.3552 5.7946 23 6 -1.2344 2.0234 2.4439 24 6 -2.4345 2.8749 2.8628 25 6 -2.3427 1.4119 3.3033 26 1 -0.3634 0.5704 -0.8548 27 1 -0.3634 -1.0255 -0.0666 28 1 -0.3634 0.4551 0.9214 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.5196 1.4088 -2.0815 32 1 3.3507 3.7267 -2.0791 33 1 3.3235 5.0422 0.0022 34 1 2.3122 5.3205 2.2049 35 1 1.6505 3.9198 3.0816 36 1 4.0148 3.0318 3.2811 37 1 4.5892 4.5715 2.5972 38 1 3.7333 4.5552 4.1578 39 1 1.4726 1.5441 6.4346 40 1 -1.1774 1.7129 1.4005 41 1 -2.2682 3.6407 3.6206 42 1 -3.1672 3.1244 2.0953 43 1 -3.0149 0.6993 2.8254 44 1 -2.1159 1.2143 4.3510 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609902821.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:00 Heat of formation + Delta-G solvation = -8.083123 kcal Electronic energy + Delta-G solvation = -28183.145134 eV Core-core repulsion = 24615.027149 eV Total energy + Delta-G solvation = -3568.117984 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.46483 -38.78066 -38.12876 -36.03661 -35.32645 -34.94519 -33.99566 -32.35640 -30.69745 -29.86368 -26.87794 -24.98397 -24.84077 -23.04621 -22.94326 -22.20558 -21.05667 -20.54111 -18.77736 -17.84534 -17.77161 -17.06492 -16.81885 -16.46384 -15.87282 -15.49353 -15.26086 -15.18533 -14.86177 -14.50732 -14.36630 -14.01263 -13.98475 -13.78603 -13.47168 -13.08949 -12.99363 -12.94679 -12.85600 -12.56275 -12.38279 -12.25532 -12.21757 -12.07818 -11.93147 -11.78803 -11.60034 -11.57291 -11.37746 -11.30482 -10.91457 -10.62373 -10.41100 -9.94403 -9.47186 -9.18704 -8.35150 -6.02083 0.05607 0.36224 0.47088 1.49328 1.53544 1.58291 2.36811 2.63093 2.95807 3.09310 3.27888 3.68920 3.82913 3.88615 4.03674 4.15762 4.24993 4.36149 4.37546 4.43274 4.45873 4.52672 4.60071 4.62662 4.68203 4.75133 4.80491 4.83759 4.97323 5.00112 5.03314 5.13397 5.19536 5.29726 5.35626 5.42798 5.48410 5.50189 5.55144 5.61058 5.67378 5.69113 5.80774 5.97397 6.13040 6.36890 7.08664 7.51607 8.73232 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013271 B = 0.008130 C = 0.006284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.413442 B = 3443.416153 C = 4454.454651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.110 4.110 3 C -0.010 4.010 4 C -0.160 4.160 5 C -0.070 4.070 6 C -0.163 4.163 7 C 0.016 3.984 8 C -0.154 4.154 9 C -0.132 4.132 10 C -0.701 4.701 11 S 2.596 3.404 12 O -0.964 6.964 13 O -1.013 7.013 14 N -0.811 5.811 15 C -0.282 4.282 16 H 0.096 0.904 17 C 0.017 3.983 18 N -0.834 5.834 19 Si 0.960 3.040 20 H -0.254 1.254 21 H -0.290 1.290 22 H -0.254 1.254 23 C 0.062 3.938 24 C -0.156 4.156 25 C -0.194 4.194 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.150 0.850 32 H 0.162 0.838 33 H 0.146 0.854 34 H 0.085 0.915 35 H 0.121 0.879 36 H 0.049 0.951 37 H 0.058 0.942 38 H 0.049 0.951 39 H 0.275 0.725 40 H 0.121 0.879 41 H 0.097 0.903 42 H 0.117 0.883 43 H 0.107 0.893 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.259 5.056 -10.558 11.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.148 4.148 3 C -0.012 4.012 4 C -0.179 4.179 5 C -0.088 4.088 6 C -0.181 4.181 7 C 0.014 3.986 8 C -0.191 4.191 9 C -0.189 4.189 10 C -0.782 4.782 11 S 2.697 3.303 12 O -0.952 6.952 13 O -1.003 7.003 14 N -0.635 5.635 15 C -0.424 4.424 16 H 0.113 0.887 17 C -0.195 4.195 18 N -0.471 5.471 19 Si 0.784 3.216 20 H -0.178 1.178 21 H -0.216 1.216 22 H -0.178 1.178 23 C -0.046 4.046 24 C -0.194 4.194 25 C -0.234 4.234 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.104 0.896 30 H 0.098 0.902 31 H 0.168 0.832 32 H 0.179 0.821 33 H 0.163 0.837 34 H 0.103 0.897 35 H 0.138 0.862 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.085 0.915 40 H 0.138 0.862 41 H 0.115 0.885 42 H 0.135 0.865 43 H 0.125 0.875 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.616 4.122 -10.204 11.023 hybrid contribution 0.600 0.470 0.450 0.885 sum -0.016 4.592 -9.754 10.781 Atomic orbital electron populations 1.22020 0.93946 1.02578 1.01949 1.21089 0.98157 0.91998 1.03545 1.19950 0.93223 0.95590 0.92390 1.21438 1.01979 0.96712 0.97741 1.21679 0.94936 0.93572 0.98591 1.21434 1.02758 1.01468 0.92479 1.19750 0.90912 0.91688 0.96212 1.21752 1.02486 1.00125 0.94718 1.21622 0.95927 1.02142 0.99254 1.31925 1.17637 1.06180 1.22444 1.08000 0.74382 0.75280 0.72629 1.93413 1.61569 1.84852 1.55400 1.93328 1.81876 1.40224 1.84866 1.52415 1.14760 1.53264 1.43099 1.19003 1.37889 0.93777 0.91700 0.88652 1.26415 0.95817 0.98163 0.99117 1.69785 1.34903 1.20688 1.21709 0.85475 0.79580 0.78974 0.77621 1.17788 1.21565 1.17836 1.21753 0.81758 1.05636 0.95481 1.23205 0.98653 0.93844 1.03713 1.23187 1.02834 0.96969 1.00383 0.92501 0.91766 0.91610 0.89589 0.90218 0.83217 0.82094 0.83675 0.89662 0.86221 0.93212 0.92352 0.93241 0.91550 0.86195 0.88452 0.86466 0.87497 0.91259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.13 8.99 71.98 0.65 -4.49 16 2 C -0.11 -4.03 5.33 29.85 0.16 -3.87 16 3 C -0.01 -0.39 5.15 -19.86 -0.10 -0.49 16 4 C -0.16 -4.78 9.67 22.27 0.22 -4.56 16 5 C -0.07 -1.88 10.05 22.27 0.22 -1.66 16 6 C -0.16 -5.08 9.71 22.27 0.22 -4.86 16 7 C 0.02 0.61 5.12 -19.87 -0.10 0.51 16 8 C -0.15 -6.16 5.30 29.85 0.16 -6.00 16 9 C -0.13 -5.30 9.37 71.98 0.67 -4.63 16 10 C -0.70 -30.08 5.88 22.27 0.13 -29.95 16 11 S 2.60 129.56 4.20 -56.49 -0.24 129.32 16 12 O -0.96 -53.86 10.13 -128.00 -1.30 -55.16 16 13 O -1.01 -52.35 10.69 -128.00 -1.37 -53.72 16 14 N -0.81 -38.07 2.90 -322.94 -0.94 -39.01 16 15 C -0.28 -13.36 4.89 84.04 0.41 -12.94 16 16 H 0.10 4.19 7.21 -2.91 -0.02 4.17 16 17 C 0.02 0.87 4.28 84.86 0.36 1.23 16 18 N -0.83 -46.33 10.67 21.65 0.23 -46.10 16 19 Si 0.96 39.65 29.57 68.60 2.03 41.68 16 20 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 21 H -0.29 -12.30 7.11 99.48 0.71 -11.60 16 22 H -0.25 -9.99 7.11 99.48 0.71 -9.29 16 23 C 0.06 2.48 5.64 44.99 0.25 2.73 16 24 C -0.16 -5.19 9.82 30.62 0.30 -4.89 16 25 C -0.19 -7.28 10.38 30.62 0.32 -6.96 16 26 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 28 H 0.07 2.59 2.36 -2.39 -0.01 2.58 16 29 H 0.09 2.51 7.98 -2.39 -0.02 2.49 16 30 H 0.08 3.44 5.70 -2.39 -0.01 3.43 16 31 H 0.15 3.40 8.02 -2.91 -0.02 3.37 16 32 H 0.16 2.88 8.06 -2.91 -0.02 2.85 16 33 H 0.15 3.63 8.06 -2.91 -0.02 3.60 16 34 H 0.08 2.88 8.10 -2.39 -0.02 2.86 16 35 H 0.12 5.36 2.30 -2.39 -0.01 5.36 16 36 H 0.05 2.30 6.15 -2.39 -0.01 2.28 16 37 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.27 14.80 8.32 -92.71 -0.77 14.03 16 40 H 0.12 4.50 5.54 -2.38 -0.01 4.49 16 41 H 0.10 3.43 6.70 -2.39 -0.02 3.42 16 42 H 0.12 3.03 8.14 -2.39 -0.02 3.01 16 43 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 44 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 Total: -1.00 -65.07 340.54 3.30 -61.77 By element: Atomic # 1 Polarization: 41.04 SS G_CDS: 1.02 Total: 42.05 kcal Atomic # 6 Polarization: -84.70 SS G_CDS: 3.87 Total: -80.83 kcal Atomic # 7 Polarization: -84.41 SS G_CDS: -0.71 Total: -85.11 kcal Atomic # 8 Polarization: -106.21 SS G_CDS: -2.67 Total: -108.88 kcal Atomic # 14 Polarization: 39.65 SS G_CDS: 2.03 Total: 41.68 kcal Atomic # 16 Polarization: 129.56 SS G_CDS: -0.24 Total: 129.32 kcal Total: -65.07 3.30 -61.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609902821.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.690 kcal (2) G-P(sol) polarization free energy of solvation -65.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds