Wall clock time and date at job start Tue Mar 31 2020 14:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47171 * 2 1 4 4 C 1.53002 * 109.47059 * 119.99804 * 2 1 3 5 5 O 1.42897 * 109.47158 * 177.36251 * 4 2 1 6 6 C 1.53003 * 109.47288 * 239.99659 * 2 1 3 7 7 H 1.08999 * 109.47294 * 175.71425 * 6 2 1 8 8 N 1.46501 * 109.46652 * 55.71585 * 6 2 1 9 9 C 1.34774 * 120.00226 * 107.43397 * 8 6 2 10 10 O 1.21282 * 119.99526 * 359.97438 * 9 8 6 11 11 C 1.50695 * 120.00329 * 179.97438 * 9 8 6 12 12 S 1.80995 * 109.47486 * 180.02562 * 11 9 8 13 13 C 1.76199 * 100.00496 * 180.02562 * 12 11 9 14 14 H 1.08004 * 119.99810 * 359.97438 * 13 12 11 15 15 C 1.38796 * 120.00021 * 180.02562 * 13 12 11 16 16 N 1.31638 * 119.99635 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 120.00167 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.46933 * 90.00391 * 17 15 13 19 19 H 1.48500 * 109.46888 * 210.00530 * 17 15 13 20 20 H 1.48500 * 109.47071 * 329.99969 * 17 15 13 21 21 C 1.50700 * 109.47096 * 295.71538 * 6 2 1 22 22 C 1.38240 * 119.99596 * 79.72642 * 21 6 2 23 23 C 1.38238 * 119.99471 * 179.80723 * 22 21 6 24 24 C 1.38241 * 120.00129 * 0.40067 * 23 22 21 25 25 C 1.38240 * 119.99749 * 359.85038 * 24 23 22 26 26 C 1.38227 * 119.99962 * 259.99464 * 21 6 2 27 27 H 1.09002 * 109.46772 * 300.00170 * 1 2 3 28 28 H 1.08998 * 109.46689 * 59.99727 * 1 2 3 29 29 H 1.08993 * 109.46780 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46620 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.46843 * 299.99932 * 3 2 1 32 32 H 1.09001 * 109.46890 * 60.00254 * 3 2 1 33 33 H 1.08995 * 109.47645 * 297.36292 * 4 2 1 34 34 H 1.08998 * 109.46864 * 57.36461 * 4 2 1 35 35 H 0.96700 * 114.00316 * 179.97438 * 5 4 2 36 36 H 0.97000 * 119.99830 * 287.43324 * 8 6 2 37 37 H 1.09008 * 109.46950 * 299.99818 * 11 9 8 38 38 H 1.09003 * 109.47325 * 59.99588 * 11 9 8 39 39 H 0.96996 * 119.99764 * 179.97438 * 16 15 13 40 40 H 1.07996 * 120.00157 * 359.97438 * 22 21 6 41 41 H 1.07994 * 119.99780 * 180.22266 * 23 22 21 42 42 H 1.07990 * 119.99870 * 179.83030 * 24 23 22 43 43 H 1.08003 * 119.99592 * 179.97438 * 25 24 23 44 44 H 1.07998 * 120.00197 * 359.97438 * 26 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 8 3.4676 -0.7752 1.2187 6 6 2.0401 -0.7213 -1.2492 7 1 3.1273 -0.6553 -1.2884 8 7 1.4693 -0.0929 -2.4431 9 6 2.2459 0.6649 -3.2425 10 8 3.4173 0.8269 -2.9731 11 6 1.6589 1.3109 -4.4709 12 16 2.9434 2.2545 -5.3287 13 6 2.0081 2.8838 -6.6829 14 1 0.9599 2.6401 -6.7748 15 6 2.6186 3.6918 -7.6320 16 7 1.9199 4.1615 -8.6440 17 14 4.4316 4.1128 -7.4734 18 1 5.2410 3.0910 -8.1847 19 1 4.6838 5.4484 -8.0715 20 1 4.8111 4.1337 -6.0379 21 6 1.6263 -2.1695 -1.1972 22 6 0.3396 -2.5336 -1.5478 23 6 -0.0387 -3.8625 -1.5039 24 6 0.8671 -4.8262 -1.1015 25 6 2.1521 -4.4613 -0.7459 26 6 2.5316 -3.1329 -0.7936 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3632 -1.0276 0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.7158 -0.1809 2.1386 34 1 1.6386 -1.7343 1.2732 35 1 3.8609 -1.2195 1.9822 36 1 0.5323 -0.2222 -2.6584 37 1 1.2697 0.5400 -5.1360 38 1 0.8501 1.9804 -4.1781 39 1 2.3464 4.7265 -9.3071 40 1 -0.3691 -1.7803 -1.8586 41 1 -1.0428 -4.1475 -1.7813 42 1 0.5706 -5.8639 -1.0646 43 1 2.8596 -5.2141 -0.4311 44 1 3.5356 -2.8479 -0.5159 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619255409.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:31 Heat of formation + Delta-G solvation = -68.554987 kcal Electronic energy + Delta-G solvation = -25529.254061 eV Core-core repulsion = 21958.513820 eV Total energy + Delta-G solvation = -3570.740241 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.73477 -38.79110 -37.78332 -35.69500 -33.19262 -32.41799 -31.49771 -31.09057 -29.29085 -27.36062 -26.40887 -25.70925 -25.37003 -22.76604 -21.70958 -20.39278 -19.08484 -18.00557 -17.57535 -17.16629 -16.45165 -16.01740 -15.79720 -15.14971 -14.96690 -14.91100 -14.52810 -14.49031 -13.88260 -13.72336 -13.42275 -13.31471 -13.23286 -12.78211 -12.73041 -12.58643 -12.22547 -12.08621 -12.04223 -11.70792 -11.24492 -11.20677 -11.09544 -10.99050 -10.96576 -10.72870 -10.52037 -10.16276 -9.83893 -9.47057 -9.08951 -8.99202 -8.93621 -8.83870 -8.47120 -6.88886 -6.27155 -3.98377 1.13872 1.21542 2.79803 3.01986 3.32441 3.36124 3.52687 3.58350 3.71817 4.01031 4.35199 4.50380 4.59072 4.68751 4.74056 4.79081 4.81172 4.91259 5.06580 5.12074 5.22732 5.25144 5.30095 5.34199 5.37113 5.40227 5.56169 5.69588 5.76358 5.79263 5.81308 5.88144 5.91214 6.00092 6.03788 6.11596 6.26576 6.32367 6.39309 6.43730 6.66853 6.80622 7.44494 7.64997 7.96027 8.43383 8.55174 9.19258 10.82162 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.017420 B = 0.003246 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.990056 B = 8624.492115 C = 9200.793232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.065 4.065 3 C -0.134 4.134 4 C 0.088 3.912 5 O -0.563 6.563 6 C 0.194 3.806 7 H 0.117 0.883 8 N -0.729 5.729 9 C 0.533 3.467 10 O -0.514 6.514 11 C -0.125 4.125 12 S -0.139 6.139 13 C -0.521 4.521 14 H 0.088 0.912 15 C 0.096 3.904 16 N -0.881 5.881 17 Si 0.856 3.144 18 H -0.267 1.267 19 H -0.274 1.274 20 H -0.235 1.235 21 C -0.083 4.083 22 C -0.113 4.113 23 C -0.121 4.121 24 C -0.124 4.124 25 C -0.122 4.122 26 C -0.102 4.102 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.044 0.956 34 H 0.047 0.953 35 H 0.375 0.625 36 H 0.396 0.604 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.270 0.730 40 H 0.121 0.879 41 H 0.121 0.879 42 H 0.119 0.881 43 H 0.120 0.880 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.879 -16.249 22.270 27.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.067 4.067 3 C -0.191 4.191 4 C 0.010 3.990 5 O -0.368 6.368 6 C 0.089 3.911 7 H 0.135 0.865 8 N -0.382 5.382 9 C 0.319 3.681 10 O -0.387 6.387 11 C -0.275 4.275 12 S 0.087 5.913 13 C -0.669 4.669 14 H 0.106 0.894 15 C -0.113 4.113 16 N -0.518 5.518 17 Si 0.681 3.319 18 H -0.192 1.192 19 H -0.200 1.200 20 H -0.159 1.159 21 C -0.084 4.084 22 C -0.132 4.132 23 C -0.139 4.139 24 C -0.142 4.142 25 C -0.140 4.140 26 C -0.121 4.121 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.221 0.779 36 H 0.231 0.769 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.080 0.920 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.137 0.863 43 H 0.138 0.862 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.019 -15.520 21.960 27.060 hybrid contribution -1.235 -0.319 -0.140 1.283 sum -4.254 -15.839 21.820 27.297 Atomic orbital electron populations 1.22017 0.93925 1.02391 1.02568 1.20883 0.95558 0.96617 0.93623 1.21747 1.02409 0.93603 1.01360 1.22194 0.81369 0.98764 0.96682 1.86546 1.19518 1.81993 1.48724 1.19783 1.00949 0.86622 0.83747 0.86539 1.46028 1.13563 1.52521 1.26131 1.20257 0.86495 0.77818 0.83544 1.90703 1.16106 1.59504 1.72436 1.23287 1.04177 1.02946 0.97120 1.84790 1.15256 1.61802 1.29470 1.22330 0.99312 1.36100 1.09148 0.89438 1.24709 0.98592 0.94133 0.93850 1.69943 1.36716 1.33018 1.12118 0.86737 0.84925 0.78684 0.81533 1.19211 1.19965 1.15882 1.20073 0.93995 0.95337 0.98970 1.21005 0.95793 0.96228 1.00138 1.21117 0.99677 0.92997 1.00102 1.21145 0.93922 0.99317 0.99808 1.21149 0.96359 0.96060 1.00395 1.21106 0.99618 0.92397 0.98955 0.92310 0.91651 0.91724 0.91361 0.92388 0.93103 0.93745 0.93443 0.77862 0.76919 0.88605 0.88563 0.91968 0.86154 0.86130 0.86323 0.86159 0.85497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 7.31 37.16 0.27 -1.01 16 2 C -0.07 -0.68 0.45 -154.50 -0.07 -0.75 16 3 C -0.13 -1.67 8.13 37.16 0.30 -1.37 16 4 C 0.09 0.77 5.30 37.16 0.20 0.97 16 5 O -0.56 -5.27 12.33 -35.23 -0.43 -5.71 16 6 C 0.19 2.38 1.61 -69.08 -0.11 2.27 16 7 H 0.12 1.82 6.48 -51.93 -0.34 1.49 16 8 N -0.73 -9.63 3.77 -54.93 -0.21 -9.83 16 9 C 0.53 9.55 7.17 -10.99 -0.08 9.48 16 10 O -0.51 -11.13 15.24 5.56 0.08 -11.05 16 11 C -0.12 -2.44 6.16 36.00 0.22 -2.22 16 12 S -0.14 -3.57 18.55 -107.50 -1.99 -5.56 16 13 C -0.52 -15.14 10.04 30.94 0.31 -14.83 16 14 H 0.09 2.65 8.03 -52.48 -0.42 2.22 16 15 C 0.10 2.82 5.50 -17.43 -0.10 2.73 16 16 N -0.88 -26.79 13.97 55.49 0.78 -26.02 16 17 Si 0.86 22.01 27.74 -169.99 -4.71 17.29 16 18 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.23 -6.03 6.74 56.52 0.38 -5.65 16 21 C -0.08 -0.88 3.73 -104.63 -0.39 -1.27 16 22 C -0.11 -1.06 7.20 -39.58 -0.29 -1.35 16 23 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 24 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 25 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 26 C -0.10 -1.05 8.77 -39.59 -0.35 -1.39 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.56 7.04 -51.93 -0.37 0.19 16 29 H 0.06 0.49 5.56 -51.93 -0.29 0.21 16 30 H 0.07 1.00 7.75 -51.93 -0.40 0.60 16 31 H 0.06 0.81 7.24 -51.93 -0.38 0.44 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.05 0.39 6.76 -51.93 -0.35 0.04 16 35 H 0.38 1.85 9.12 45.56 0.42 2.26 16 36 H 0.40 4.21 6.40 -40.82 -0.26 3.95 16 37 H 0.10 1.76 8.14 -51.91 -0.42 1.34 16 38 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 39 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 40 H 0.12 0.96 5.89 -52.49 -0.31 0.65 16 41 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 42 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 43 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 44 H 0.13 1.28 7.97 -52.49 -0.42 0.87 16 LS Contribution 365.47 15.07 5.51 5.51 Total: -1.00 -34.92 365.47 -7.90 -42.82 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -5.65 Total: 5.65 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: -1.27 Total: -13.10 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: 0.57 Total: -35.85 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -0.35 Total: -16.76 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.71 Total: 17.29 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.92 -7.90 -42.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619255409.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.736 kcal (2) G-P(sol) polarization free energy of solvation -34.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds