Wall clock time and date at job start Tue Mar 31 2020 14:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47171 * 2 1 4 4 C 1.53002 * 109.47059 * 119.99804 * 2 1 3 5 5 O 1.42897 * 109.47158 * 177.36251 * 4 2 1 6 6 C 1.53003 * 109.47288 * 239.99659 * 2 1 3 7 7 H 1.08999 * 109.47294 * 175.71425 * 6 2 1 8 8 N 1.46501 * 109.46652 * 55.71585 * 6 2 1 9 9 C 1.34774 * 120.00226 * 107.43397 * 8 6 2 10 10 O 1.21282 * 119.99526 * 359.97438 * 9 8 6 11 11 C 1.50695 * 120.00329 * 179.97438 * 9 8 6 12 12 S 1.80995 * 109.47486 * 180.02562 * 11 9 8 13 13 C 1.76199 * 100.00496 * 180.02562 * 12 11 9 14 14 H 1.08004 * 119.99810 * 359.97438 * 13 12 11 15 15 C 1.38796 * 120.00021 * 180.02562 * 13 12 11 16 16 N 1.31638 * 119.99635 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 120.00167 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.46933 * 90.00391 * 17 15 13 19 19 H 1.48500 * 109.46888 * 210.00530 * 17 15 13 20 20 H 1.48500 * 109.47071 * 329.99969 * 17 15 13 21 21 C 1.50700 * 109.47096 * 295.71538 * 6 2 1 22 22 C 1.38240 * 119.99596 * 79.72642 * 21 6 2 23 23 C 1.38238 * 119.99471 * 179.80723 * 22 21 6 24 24 C 1.38241 * 120.00129 * 0.40067 * 23 22 21 25 25 C 1.38240 * 119.99749 * 359.85038 * 24 23 22 26 26 C 1.38227 * 119.99962 * 259.99464 * 21 6 2 27 27 H 1.09002 * 109.46772 * 300.00170 * 1 2 3 28 28 H 1.08998 * 109.46689 * 59.99727 * 1 2 3 29 29 H 1.08993 * 109.46780 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46620 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.46843 * 299.99932 * 3 2 1 32 32 H 1.09001 * 109.46890 * 60.00254 * 3 2 1 33 33 H 1.08995 * 109.47645 * 297.36292 * 4 2 1 34 34 H 1.08998 * 109.46864 * 57.36461 * 4 2 1 35 35 H 0.96700 * 114.00316 * 179.97438 * 5 4 2 36 36 H 0.97000 * 119.99830 * 287.43324 * 8 6 2 37 37 H 1.09008 * 109.46950 * 299.99818 * 11 9 8 38 38 H 1.09003 * 109.47325 * 59.99588 * 11 9 8 39 39 H 0.96996 * 119.99764 * 179.97438 * 16 15 13 40 40 H 1.07996 * 120.00157 * 359.97438 * 22 21 6 41 41 H 1.07994 * 119.99780 * 180.22266 * 23 22 21 42 42 H 1.07990 * 119.99870 * 179.83030 * 24 23 22 43 43 H 1.08003 * 119.99592 * 179.97438 * 25 24 23 44 44 H 1.07998 * 120.00197 * 359.97438 * 26 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 8 3.4676 -0.7752 1.2187 6 6 2.0401 -0.7213 -1.2492 7 1 3.1273 -0.6553 -1.2884 8 7 1.4693 -0.0929 -2.4431 9 6 2.2459 0.6649 -3.2425 10 8 3.4173 0.8269 -2.9731 11 6 1.6589 1.3109 -4.4709 12 16 2.9434 2.2545 -5.3287 13 6 2.0081 2.8838 -6.6829 14 1 0.9599 2.6401 -6.7748 15 6 2.6186 3.6918 -7.6320 16 7 1.9199 4.1615 -8.6440 17 14 4.4316 4.1128 -7.4734 18 1 5.2410 3.0910 -8.1847 19 1 4.6838 5.4484 -8.0715 20 1 4.8111 4.1337 -6.0379 21 6 1.6263 -2.1695 -1.1972 22 6 0.3396 -2.5336 -1.5478 23 6 -0.0387 -3.8625 -1.5039 24 6 0.8671 -4.8262 -1.1015 25 6 2.1521 -4.4613 -0.7459 26 6 2.5316 -3.1329 -0.7936 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3632 -1.0276 0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.7158 -0.1809 2.1386 34 1 1.6386 -1.7343 1.2732 35 1 3.8609 -1.2195 1.9822 36 1 0.5323 -0.2222 -2.6584 37 1 1.2697 0.5400 -5.1360 38 1 0.8501 1.9804 -4.1781 39 1 2.3464 4.7265 -9.3071 40 1 -0.3691 -1.7803 -1.8586 41 1 -1.0428 -4.1475 -1.7813 42 1 0.5706 -5.8639 -1.0646 43 1 2.8596 -5.2141 -0.4311 44 1 3.5356 -2.8479 -0.5159 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619255409.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:31 Heat of formation + Delta-G solvation = -92.907485 kcal Electronic energy + Delta-G solvation = -25530.310064 eV Core-core repulsion = 21958.513820 eV Total energy + Delta-G solvation = -3571.796245 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.71189 -39.94203 -38.60164 -36.59717 -34.68185 -34.31330 -32.38179 -31.80512 -30.69490 -28.19931 -27.88143 -27.21156 -26.38171 -23.49717 -22.47789 -21.71745 -20.13004 -19.77124 -18.33134 -18.26066 -17.78257 -17.13307 -16.98110 -16.69968 -16.04555 -15.97657 -15.88065 -15.41127 -15.21061 -14.90408 -14.76482 -14.42291 -14.26214 -14.02144 -13.70185 -13.46381 -13.35214 -13.34167 -13.02776 -12.96952 -12.89382 -12.70773 -12.44892 -12.08232 -11.88963 -11.83525 -11.80914 -11.45735 -11.17831 -10.98827 -10.85941 -10.53958 -10.10647 -9.75847 -9.60163 -9.00063 -8.52354 -6.22833 0.41790 0.52760 0.98226 1.30458 1.46192 1.55088 1.57293 2.21029 2.25719 2.71279 2.85991 2.89955 3.35432 3.67508 3.76916 3.84843 3.90784 4.06320 4.18399 4.20527 4.25628 4.36846 4.43570 4.48100 4.57592 4.61911 4.66179 4.71042 4.77477 4.83557 4.96350 5.00584 5.08809 5.14927 5.17799 5.29780 5.38980 5.43730 5.60068 5.65846 5.70195 5.75741 6.10646 6.12928 6.44150 6.93069 6.97476 7.19956 8.60172 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.017420 B = 0.003246 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.990056 B = 8624.492115 C = 9200.793232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.064 4.064 3 C -0.130 4.130 4 C 0.092 3.908 5 O -0.585 6.585 6 C 0.199 3.801 7 H 0.079 0.921 8 N -0.705 5.705 9 C 0.538 3.462 10 O -0.557 6.557 11 C -0.111 4.111 12 S -0.173 6.173 13 C -0.529 4.529 14 H 0.063 0.937 15 C 0.047 3.953 16 N -0.917 5.917 17 Si 0.913 3.087 18 H -0.263 1.263 19 H -0.258 1.258 20 H -0.238 1.238 21 C -0.095 4.095 22 C -0.119 4.119 23 C -0.123 4.123 24 C -0.125 4.125 25 C -0.125 4.125 26 C -0.116 4.116 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.393 0.607 36 H 0.412 0.588 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.277 0.723 40 H 0.134 0.866 41 H 0.143 0.857 42 H 0.142 0.858 43 H 0.138 0.862 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.060 -18.031 23.896 30.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.065 4.065 3 C -0.187 4.187 4 C 0.014 3.986 5 O -0.393 6.393 6 C 0.095 3.905 7 H 0.097 0.903 8 N -0.359 5.359 9 C 0.323 3.677 10 O -0.434 6.434 11 C -0.262 4.262 12 S 0.053 5.947 13 C -0.676 4.676 14 H 0.081 0.919 15 C -0.158 4.158 16 N -0.555 5.555 17 Si 0.735 3.265 18 H -0.187 1.187 19 H -0.182 1.182 20 H -0.162 1.162 21 C -0.096 4.096 22 C -0.137 4.137 23 C -0.141 4.141 24 C -0.143 4.143 25 C -0.143 4.143 26 C -0.134 4.134 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.096 0.904 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.242 0.758 36 H 0.250 0.750 37 H 0.129 0.871 38 H 0.132 0.868 39 H 0.087 0.913 40 H 0.151 0.849 41 H 0.161 0.839 42 H 0.160 0.840 43 H 0.155 0.845 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.242 -17.332 23.616 29.599 hybrid contribution -0.959 0.101 -0.555 1.113 sum -5.201 -17.231 23.061 29.254 Atomic orbital electron populations 1.22004 0.91910 1.03418 1.03214 1.20893 0.97106 0.94956 0.93525 1.21691 1.00432 0.95382 1.01195 1.22175 0.81122 0.99184 0.96128 1.86522 1.20111 1.82484 1.50197 1.19732 0.98816 0.88255 0.83728 0.90324 1.45808 1.13863 1.50653 1.25552 1.19939 0.86085 0.78178 0.83451 1.90696 1.17918 1.61379 1.73437 1.23271 1.02430 1.02945 0.97581 1.84738 1.17902 1.63117 1.28936 1.22466 0.98602 1.36122 1.10450 0.91926 1.25535 1.02593 0.94099 0.93600 1.70015 1.38559 1.33908 1.13002 0.85889 0.80038 0.79225 0.81362 1.18730 1.18209 1.16190 1.19911 0.94975 0.94004 1.00715 1.21169 0.95301 0.97231 0.99988 1.21431 1.00795 0.92538 0.99333 1.21491 0.93508 1.00590 0.98662 1.21383 0.97195 0.95712 1.00038 1.21143 0.99344 0.93204 0.99728 0.90959 0.91809 0.90438 0.94349 0.94378 0.91330 0.92225 0.92513 0.75819 0.75046 0.87070 0.86793 0.91348 0.84850 0.83896 0.84031 0.84463 0.86387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 7.31 71.98 0.53 -1.60 16 2 C -0.06 -1.25 0.45 -52.18 -0.02 -1.28 16 3 C -0.13 -3.24 8.13 71.98 0.59 -2.66 16 4 C 0.09 1.48 5.30 71.98 0.38 1.86 16 5 O -0.59 -10.84 12.33 -148.98 -1.84 -12.68 16 6 C 0.20 4.82 1.61 44.25 0.07 4.89 16 7 H 0.08 2.57 6.48 -2.39 -0.02 2.55 16 8 N -0.71 -18.11 3.77 -446.10 -1.68 -19.79 16 9 C 0.54 19.31 7.17 87.66 0.63 19.94 16 10 O -0.56 -24.81 15.24 -3.04 -0.05 -24.85 16 11 C -0.11 -4.31 6.16 71.23 0.44 -3.87 16 12 S -0.17 -8.95 18.55 -56.49 -1.05 -10.00 16 13 C -0.53 -31.18 10.04 67.95 0.68 -30.50 16 14 H 0.06 3.88 8.03 -2.91 -0.02 3.86 16 15 C 0.05 2.80 5.50 84.86 0.47 3.27 16 16 N -0.92 -56.31 13.97 21.65 0.30 -56.01 16 17 Si 0.91 45.70 27.74 68.60 1.90 47.60 16 18 H -0.26 -12.85 7.11 99.48 0.71 -12.14 16 19 H -0.26 -12.06 7.11 99.48 0.71 -11.35 16 20 H -0.24 -11.95 6.74 99.48 0.67 -11.28 16 21 C -0.10 -1.90 3.73 -19.87 -0.07 -1.98 16 22 C -0.12 -1.91 7.20 22.27 0.16 -1.75 16 23 C -0.12 -1.70 10.05 22.27 0.22 -1.48 16 24 C -0.12 -1.70 10.05 22.27 0.22 -1.47 16 25 C -0.13 -1.95 10.05 22.27 0.22 -1.73 16 26 C -0.12 -2.25 8.77 22.27 0.20 -2.06 16 27 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.06 0.93 7.04 -2.39 -0.02 0.91 16 29 H 0.08 0.93 5.56 -2.39 -0.01 0.92 16 30 H 0.04 1.17 7.75 -2.39 -0.02 1.15 16 31 H 0.04 1.07 7.24 -2.39 -0.02 1.06 16 32 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.06 0.82 6.76 -2.39 -0.02 0.80 16 35 H 0.39 3.63 9.12 -74.06 -0.68 2.96 16 36 H 0.41 7.98 6.40 -92.71 -0.59 7.39 16 37 H 0.11 3.98 8.14 -2.39 -0.02 3.96 16 38 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 39 H 0.28 15.72 8.31 -92.71 -0.77 14.95 16 40 H 0.13 1.71 5.89 -2.91 -0.02 1.69 16 41 H 0.14 1.32 8.06 -2.91 -0.02 1.29 16 42 H 0.14 1.25 8.06 -2.92 -0.02 1.23 16 43 H 0.14 1.59 8.06 -2.91 -0.02 1.56 16 44 H 0.12 2.43 7.97 -2.91 -0.02 2.41 16 Total: -1.00 -77.23 365.47 2.02 -75.21 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: -0.28 Total: 20.93 kcal Atomic # 6 Polarization: -25.12 SS G_CDS: 4.71 Total: -20.41 kcal Atomic # 7 Polarization: -74.42 SS G_CDS: -1.38 Total: -75.80 kcal Atomic # 8 Polarization: -35.65 SS G_CDS: -1.88 Total: -37.53 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 1.90 Total: 47.60 kcal Atomic # 16 Polarization: -8.95 SS G_CDS: -1.05 Total: -10.00 kcal Total: -77.23 2.02 -75.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619255409.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.695 kcal (2) G-P(sol) polarization free energy of solvation -77.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds