Wall clock time and date at job start Tue Mar 31 2020 14:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47344 * 2 1 4 4 C 1.53005 * 109.46892 * 120.00011 * 2 1 3 5 5 N 1.46505 * 109.47132 * 174.09740 * 4 2 1 6 6 C 1.46501 * 120.00008 * 112.74875 * 5 4 2 7 7 C 1.52994 * 117.49705 * 14.44160 * 6 5 4 8 8 C 1.52994 * 117.49903 * 305.81562 * 6 5 4 9 9 S 1.65595 * 119.99885 * 292.75374 * 5 4 2 10 10 O 1.42107 * 106.40480 * 16.83619 * 9 5 4 11 11 O 1.42097 * 106.40578 * 149.75718 * 9 5 4 12 12 C 1.76203 * 107.21649 * 263.29807 * 9 5 4 13 13 C 1.38658 * 119.87787 * 94.92170 * 12 9 5 14 14 C 1.38618 * 120.50259 * 179.97438 * 13 12 9 15 15 C 1.37634 * 120.24739 * 0.02562 * 14 13 12 16 16 C 1.40705 * 119.74335 * 359.97438 * 15 14 13 17 17 C 1.41401 * 120.24136 * 179.97438 * 16 15 14 18 18 H 1.07996 * 119.99941 * 211.27232 * 17 16 15 19 19 C 1.39940 * 120.00080 * 31.27703 * 17 16 15 20 20 N 1.30826 * 120.00131 * 8.04974 * 19 17 16 21 21 Si 1.86802 * 120.00286 * 188.05306 * 19 17 16 22 22 H 1.48499 * 109.46613 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47131 * 119.99606 * 21 19 17 24 24 H 1.48497 * 109.47231 * 239.99673 * 21 19 17 25 25 C 1.37601 * 119.87192 * 274.64468 * 12 9 5 26 26 H 1.09000 * 109.47322 * 300.00099 * 1 2 3 27 27 H 1.08999 * 109.46851 * 60.00544 * 1 2 3 28 28 H 1.09004 * 109.47186 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47322 * 239.99901 * 2 1 3 30 30 H 1.09000 * 109.47208 * 183.16632 * 3 2 1 31 31 H 1.08998 * 109.47218 * 303.17239 * 3 2 1 32 32 H 1.09006 * 109.46729 * 63.16895 * 3 2 1 33 33 H 1.08997 * 109.47121 * 54.09821 * 4 2 1 34 34 H 1.09003 * 109.47228 * 294.09403 * 4 2 1 35 35 H 1.09003 * 115.54498 * 160.14577 * 6 5 4 36 36 H 1.08998 * 117.50185 * 359.97438 * 7 6 5 37 37 H 1.09003 * 117.49756 * 145.01836 * 7 6 5 38 38 H 1.09003 * 117.49742 * 214.97442 * 8 6 5 39 39 H 1.08996 * 117.50487 * 359.97438 * 8 6 5 40 40 H 1.08002 * 119.74784 * 359.97365 * 13 12 9 41 41 H 1.07997 * 119.87429 * 180.02562 * 14 13 12 42 42 H 1.07996 * 120.12972 * 179.97438 * 15 14 13 43 43 H 0.96997 * 120.00168 * 180.02562 * 20 19 17 44 44 H 1.07998 * 120.13257 * 0.02562 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.4981 -0.8456 1.1804 6 6 4.3414 -0.1103 2.1262 7 6 3.6622 0.4920 3.3577 8 6 4.1389 1.4030 2.2246 9 16 4.1930 -1.8170 0.0335 10 8 3.1922 -2.0612 -0.9454 11 8 5.4542 -1.2381 -0.2722 12 6 4.5298 -3.3682 0.7984 13 6 3.6170 -4.4060 0.6869 14 6 3.8691 -5.6318 1.2829 15 6 5.0307 -5.8313 1.9937 16 6 5.9642 -4.7853 2.1134 17 6 7.1608 -4.9786 2.8416 18 1 7.6156 -4.1493 3.3630 19 6 7.7558 -6.2444 2.8867 20 7 7.2976 -7.2098 2.1320 21 14 9.2041 -6.5558 4.0246 22 1 9.5277 -5.3104 4.7660 23 1 8.8543 -7.6296 4.9887 24 1 10.3821 -6.9745 3.2233 25 6 5.7004 -3.5469 1.4993 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1285 1.4430 -0.0568 31 1 1.6310 1.9725 -0.8602 32 1 1.7238 1.9396 0.9171 33 1 1.5929 -1.7139 1.3037 34 1 1.7655 -0.1500 2.1362 35 1 5.3556 -0.4913 2.2462 36 1 2.5879 0.3417 3.4641 37 1 4.2295 0.5074 4.2884 38 1 5.0198 2.0176 2.4099 39 1 3.3786 1.8517 1.5855 40 1 2.7027 -4.2581 0.1314 41 1 3.1513 -6.4332 1.1893 42 1 5.2250 -6.7870 2.4577 43 1 7.7098 -8.0873 2.1635 44 1 6.4119 -2.7386 1.5815 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619475224.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:52 Heat of formation + Delta-G solvation = -30.137659 kcal Electronic energy + Delta-G solvation = -26169.577169 eV Core-core repulsion = 22600.502828 eV Total energy + Delta-G solvation = -3569.074341 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -38.78009 -37.65756 -36.87864 -35.44808 -35.14592 -33.78284 -32.23636 -30.06683 -29.81023 -27.32703 -26.13895 -25.46625 -22.30549 -21.95756 -21.37359 -20.99612 -20.65851 -18.61332 -17.61507 -17.25141 -16.38302 -15.93674 -15.25536 -14.92521 -14.82419 -14.71682 -14.39539 -14.22270 -13.47061 -13.41691 -13.32507 -12.68728 -12.55482 -12.26051 -12.05950 -11.95653 -11.87196 -11.79438 -11.57544 -11.49573 -11.38071 -11.33500 -11.12619 -11.03200 -10.88944 -10.82096 -10.72598 -10.57867 -10.30843 -10.19156 -9.72518 -9.59467 -9.38265 -8.53737 -8.03676 -7.63476 -6.83822 -4.55674 0.93884 2.17750 2.61785 3.01941 3.04653 3.07182 3.37845 3.86031 3.87526 4.27693 4.45547 4.63398 4.76498 4.91731 4.94036 5.02205 5.05799 5.14159 5.28719 5.38367 5.49243 5.57156 5.68452 5.70293 5.81574 5.82030 5.90850 5.98890 6.01294 6.08704 6.14307 6.17257 6.22470 6.40497 6.50505 6.61090 6.71360 6.76918 6.93059 7.07841 7.21493 7.35228 7.69829 7.81872 7.93885 8.40470 8.68821 8.72872 10.12066 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.019406 B = 0.003945 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.520729 B = 7096.249146 C = 7768.558478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.141 4.141 3 C -0.153 4.153 4 C 0.125 3.875 5 N -0.970 5.970 6 C 0.094 3.906 7 C -0.187 4.187 8 C -0.212 4.212 9 S 2.688 3.312 10 O -0.967 6.967 11 O -0.966 6.966 12 C -0.638 4.638 13 C -0.137 4.137 14 C -0.126 4.126 15 C -0.105 4.105 16 C 0.091 3.909 17 C -0.464 4.464 18 H 0.081 0.919 19 C 0.072 3.928 20 N -0.807 5.807 21 Si 0.915 3.085 22 H -0.260 1.260 23 H -0.272 1.272 24 H -0.273 1.273 25 C -0.119 4.119 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.105 0.895 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.136 0.864 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.114 0.886 40 H 0.108 0.892 41 H 0.099 0.901 42 H 0.127 0.873 43 H 0.281 0.719 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.165 11.726 1.841 14.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.161 4.161 3 C -0.209 4.209 4 C 0.000 4.000 5 N -0.803 5.803 6 C -0.013 4.013 7 C -0.226 4.226 8 C -0.252 4.252 9 S 2.786 3.214 10 O -0.958 6.958 11 O -0.957 6.957 12 C -0.729 4.729 13 C -0.159 4.159 14 C -0.146 4.146 15 C -0.125 4.125 16 C 0.088 3.912 17 C -0.495 4.495 18 H 0.099 0.901 19 C -0.144 4.144 20 N -0.434 5.434 21 Si 0.740 3.260 22 H -0.184 1.184 23 H -0.198 1.198 24 H -0.199 1.199 25 C -0.140 4.140 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.123 0.877 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.105 0.895 35 H 0.153 0.847 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.116 0.884 39 H 0.132 0.868 40 H 0.126 0.874 41 H 0.117 0.883 42 H 0.144 0.856 43 H 0.092 0.908 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -8.945 11.731 0.895 14.780 hybrid contribution 0.730 -0.902 1.061 1.572 sum -8.215 10.829 1.957 13.733 Atomic orbital electron populations 1.21708 0.94568 1.01997 1.01470 1.21951 0.96467 0.96995 1.00673 1.22098 1.01641 0.95972 1.01233 1.21454 0.78516 1.01245 0.98792 1.57232 1.13200 1.59753 1.50075 1.21363 0.95141 0.91782 0.93036 1.23316 1.01408 1.04348 0.93486 1.23897 1.04580 0.94138 1.02539 1.01839 0.72766 0.73722 0.73063 1.93461 1.59825 1.86027 1.56490 1.93531 1.42277 1.77442 1.82415 1.29837 1.04981 1.19089 1.19039 1.20153 0.98391 0.93569 1.03739 1.20858 0.97886 0.95993 0.99816 1.21713 0.91588 1.00395 0.98796 1.17704 0.92528 0.90646 0.90354 1.19590 1.06485 0.95417 1.27967 0.90078 1.25894 0.98535 0.95464 0.94542 1.69735 1.38587 1.03243 1.31803 0.86141 0.80367 0.79373 0.80155 1.18385 1.19761 1.19863 1.20801 0.94866 0.99678 0.98697 0.92999 0.92529 0.92309 0.87723 0.91818 0.92765 0.92583 0.90812 0.89515 0.84664 0.88220 0.88136 0.88429 0.86819 0.87400 0.88263 0.85567 0.90757 0.87261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.19 37.16 0.34 -1.04 16 2 C -0.14 -1.73 2.88 -90.62 -0.26 -1.99 16 3 C -0.15 -1.64 7.43 37.16 0.28 -1.37 16 4 C 0.13 1.58 4.68 -4.04 -0.02 1.56 16 5 N -0.97 -14.58 2.77 -107.30 -0.30 -14.88 16 6 C 0.09 1.28 6.19 -67.94 -0.42 0.86 16 7 C -0.19 -2.00 9.80 -26.73 -0.26 -2.26 16 8 C -0.21 -2.33 9.62 -26.73 -0.26 -2.59 16 9 S 2.69 51.45 5.57 -107.50 -0.60 50.85 16 10 O -0.97 -19.23 13.91 -57.17 -0.80 -20.02 16 11 O -0.97 -20.79 16.67 -57.17 -0.95 -21.75 16 12 C -0.64 -14.05 5.96 -39.66 -0.24 -14.29 16 13 C -0.14 -3.00 9.54 -39.29 -0.37 -3.37 16 14 C -0.13 -2.83 10.02 -39.66 -0.40 -3.23 16 15 C -0.11 -2.61 8.64 -38.87 -0.34 -2.95 16 16 C 0.09 2.35 5.53 -106.82 -0.59 1.76 16 17 C -0.46 -11.91 9.06 -37.74 -0.34 -12.25 16 18 H 0.08 1.98 7.86 -52.49 -0.41 1.57 16 19 C 0.07 1.76 5.29 -17.34 -0.09 1.66 16 20 N -0.81 -20.38 10.88 55.55 0.60 -19.78 16 21 Si 0.92 18.27 29.57 -169.99 -5.03 13.24 16 22 H -0.26 -5.12 7.11 56.52 0.40 -4.71 16 23 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 24 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 25 C -0.12 -2.86 9.26 -38.87 -0.36 -3.22 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.10 1.56 5.52 -51.93 -0.29 1.28 16 30 H 0.06 0.76 6.26 -51.93 -0.33 0.44 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.51 7.15 -51.93 -0.37 0.14 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.09 0.90 5.31 -51.93 -0.28 0.62 16 35 H 0.14 1.95 8.01 -51.93 -0.42 1.53 16 36 H 0.10 0.98 5.95 -51.93 -0.31 0.67 16 37 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.11 1.17 3.66 -51.93 -0.19 0.98 16 40 H 0.11 2.12 7.50 -52.49 -0.39 1.73 16 41 H 0.10 1.94 8.06 -52.49 -0.42 1.52 16 42 H 0.13 3.20 6.32 -52.49 -0.33 2.87 16 43 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 44 H 0.11 2.49 7.71 -52.49 -0.40 2.08 16 LS Contribution 358.38 15.07 5.40 5.40 Total: -1.00 -29.53 358.38 -11.23 -40.76 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -6.23 Total: 8.88 kcal Atomic # 6 Polarization: -39.38 SS G_CDS: -3.33 Total: -42.71 kcal Atomic # 7 Polarization: -34.96 SS G_CDS: 0.31 Total: -34.66 kcal Atomic # 8 Polarization: -40.02 SS G_CDS: -1.75 Total: -41.77 kcal Atomic # 14 Polarization: 18.27 SS G_CDS: -5.03 Total: 13.24 kcal Atomic # 16 Polarization: 51.45 SS G_CDS: -0.60 Total: 50.85 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.53 -11.23 -40.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619475224.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.622 kcal (2) G-P(sol) polarization free energy of solvation -29.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds