Wall clock time and date at job start Tue Mar 31 2020 14:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47344 * 2 1 4 4 C 1.53005 * 109.46892 * 120.00011 * 2 1 3 5 5 N 1.46505 * 109.47132 * 174.09740 * 4 2 1 6 6 C 1.46501 * 120.00008 * 112.74875 * 5 4 2 7 7 C 1.52994 * 117.49705 * 14.44160 * 6 5 4 8 8 C 1.52994 * 117.49903 * 305.81562 * 6 5 4 9 9 S 1.65595 * 119.99885 * 292.75374 * 5 4 2 10 10 O 1.42107 * 106.40480 * 16.83619 * 9 5 4 11 11 O 1.42097 * 106.40578 * 149.75718 * 9 5 4 12 12 C 1.76203 * 107.21649 * 263.29807 * 9 5 4 13 13 C 1.38658 * 119.87787 * 94.92170 * 12 9 5 14 14 C 1.38618 * 120.50259 * 179.97438 * 13 12 9 15 15 C 1.37634 * 120.24739 * 0.02562 * 14 13 12 16 16 C 1.40705 * 119.74335 * 359.97438 * 15 14 13 17 17 C 1.41401 * 120.24136 * 179.97438 * 16 15 14 18 18 H 1.07996 * 119.99941 * 211.27232 * 17 16 15 19 19 C 1.39940 * 120.00080 * 31.27703 * 17 16 15 20 20 N 1.30826 * 120.00131 * 8.04974 * 19 17 16 21 21 Si 1.86802 * 120.00286 * 188.05306 * 19 17 16 22 22 H 1.48499 * 109.46613 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47131 * 119.99606 * 21 19 17 24 24 H 1.48497 * 109.47231 * 239.99673 * 21 19 17 25 25 C 1.37601 * 119.87192 * 274.64468 * 12 9 5 26 26 H 1.09000 * 109.47322 * 300.00099 * 1 2 3 27 27 H 1.08999 * 109.46851 * 60.00544 * 1 2 3 28 28 H 1.09004 * 109.47186 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47322 * 239.99901 * 2 1 3 30 30 H 1.09000 * 109.47208 * 183.16632 * 3 2 1 31 31 H 1.08998 * 109.47218 * 303.17239 * 3 2 1 32 32 H 1.09006 * 109.46729 * 63.16895 * 3 2 1 33 33 H 1.08997 * 109.47121 * 54.09821 * 4 2 1 34 34 H 1.09003 * 109.47228 * 294.09403 * 4 2 1 35 35 H 1.09003 * 115.54498 * 160.14577 * 6 5 4 36 36 H 1.08998 * 117.50185 * 359.97438 * 7 6 5 37 37 H 1.09003 * 117.49756 * 145.01836 * 7 6 5 38 38 H 1.09003 * 117.49742 * 214.97442 * 8 6 5 39 39 H 1.08996 * 117.50487 * 359.97438 * 8 6 5 40 40 H 1.08002 * 119.74784 * 359.97365 * 13 12 9 41 41 H 1.07997 * 119.87429 * 180.02562 * 14 13 12 42 42 H 1.07996 * 120.12972 * 179.97438 * 15 14 13 43 43 H 0.96997 * 120.00168 * 180.02562 * 20 19 17 44 44 H 1.07998 * 120.13257 * 0.02562 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.4981 -0.8456 1.1804 6 6 4.3414 -0.1103 2.1262 7 6 3.6622 0.4920 3.3577 8 6 4.1389 1.4030 2.2246 9 16 4.1930 -1.8170 0.0335 10 8 3.1922 -2.0612 -0.9454 11 8 5.4542 -1.2381 -0.2722 12 6 4.5298 -3.3682 0.7984 13 6 3.6170 -4.4060 0.6869 14 6 3.8691 -5.6318 1.2829 15 6 5.0307 -5.8313 1.9937 16 6 5.9642 -4.7853 2.1134 17 6 7.1608 -4.9786 2.8416 18 1 7.6156 -4.1493 3.3630 19 6 7.7558 -6.2444 2.8867 20 7 7.2976 -7.2098 2.1320 21 14 9.2041 -6.5558 4.0246 22 1 9.5277 -5.3104 4.7660 23 1 8.8543 -7.6296 4.9887 24 1 10.3821 -6.9745 3.2233 25 6 5.7004 -3.5469 1.4993 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1285 1.4430 -0.0568 31 1 1.6310 1.9725 -0.8602 32 1 1.7238 1.9396 0.9171 33 1 1.5929 -1.7139 1.3037 34 1 1.7655 -0.1500 2.1362 35 1 5.3556 -0.4913 2.2462 36 1 2.5879 0.3417 3.4641 37 1 4.2295 0.5074 4.2884 38 1 5.0198 2.0176 2.4099 39 1 3.3786 1.8517 1.5855 40 1 2.7027 -4.2581 0.1314 41 1 3.1513 -6.4332 1.1893 42 1 5.2250 -6.7870 2.4577 43 1 7.7098 -8.0873 2.1635 44 1 6.4119 -2.7386 1.5815 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619475224.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:51 Heat of formation + Delta-G solvation = -46.320757 kcal Electronic energy + Delta-G solvation = -26170.278920 eV Core-core repulsion = 22600.502828 eV Total energy + Delta-G solvation = -3569.776092 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.78591 -39.48193 -38.42135 -36.95834 -36.22152 -35.62787 -33.30515 -31.92314 -31.62274 -28.12555 -27.37101 -27.10267 -23.69777 -23.17622 -22.85679 -22.45527 -21.66640 -20.23963 -19.14375 -18.53944 -17.74443 -17.55466 -16.93128 -16.55168 -16.27711 -15.77319 -15.57255 -15.25512 -15.18609 -15.03477 -14.35041 -14.32832 -13.79516 -13.57851 -13.31972 -13.25219 -13.13620 -13.09109 -13.02807 -12.98905 -12.82584 -12.79042 -12.66269 -12.63867 -12.20537 -12.03462 -11.67585 -11.65250 -11.54131 -11.45891 -11.24183 -11.18423 -11.05742 -9.88385 -9.63402 -9.51468 -8.67114 -6.49719 -0.57222 0.37133 0.80422 1.37293 1.43648 1.52301 1.99060 2.18644 2.57320 2.71114 3.02957 3.31194 3.45565 3.72093 3.91908 4.03488 4.04931 4.14704 4.21127 4.25293 4.32764 4.39329 4.56567 4.75924 4.80031 4.83162 4.86627 4.86829 4.94721 4.99641 5.03527 5.07545 5.14671 5.20465 5.27078 5.28950 5.37600 5.38989 5.50203 5.51890 5.55444 5.75217 5.84315 5.93592 6.07826 6.50894 6.80274 6.83050 8.31061 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.019406 B = 0.003945 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.520729 B = 7096.249146 C = 7768.558478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.144 4.144 3 C -0.152 4.152 4 C 0.116 3.884 5 N -0.958 5.958 6 C 0.051 3.949 7 C -0.166 4.166 8 C -0.198 4.198 9 S 2.711 3.289 10 O -0.975 6.975 11 O -0.994 6.994 12 C -0.647 4.647 13 C -0.140 4.140 14 C -0.127 4.127 15 C -0.128 4.128 16 C 0.062 3.938 17 C -0.499 4.499 18 H 0.080 0.920 19 C 0.031 3.969 20 N -0.839 5.839 21 Si 0.988 3.012 22 H -0.256 1.256 23 H -0.262 1.262 24 H -0.269 1.269 25 C -0.137 4.137 26 H 0.073 0.927 27 H 0.062 0.938 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.047 0.953 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.117 0.883 35 H 0.117 0.883 36 H 0.115 0.885 37 H 0.111 0.889 38 H 0.108 0.892 39 H 0.124 0.876 40 H 0.132 0.868 41 H 0.129 0.871 42 H 0.115 0.885 43 H 0.289 0.711 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.575 13.320 2.914 17.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.164 4.164 3 C -0.209 4.209 4 C -0.008 4.008 5 N -0.794 5.794 6 C -0.056 4.056 7 C -0.205 4.205 8 C -0.236 4.236 9 S 2.806 3.194 10 O -0.965 6.965 11 O -0.984 6.984 12 C -0.735 4.735 13 C -0.160 4.160 14 C -0.146 4.146 15 C -0.148 4.148 16 C 0.059 3.941 17 C -0.529 4.529 18 H 0.099 0.901 19 C -0.182 4.182 20 N -0.466 5.466 21 Si 0.809 3.191 22 H -0.180 1.180 23 H -0.186 1.186 24 H -0.194 1.194 25 C -0.158 4.158 26 H 0.092 0.908 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.135 0.865 35 H 0.135 0.865 36 H 0.133 0.867 37 H 0.130 0.870 38 H 0.126 0.874 39 H 0.142 0.858 40 H 0.150 0.850 41 H 0.147 0.853 42 H 0.132 0.868 43 H 0.100 0.900 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -10.362 13.293 1.968 16.969 hybrid contribution 1.046 -1.292 0.671 1.793 sum -9.316 12.001 2.638 15.420 Atomic orbital electron populations 1.21694 0.92600 1.02242 1.02895 1.21936 0.98141 0.97480 0.98891 1.22104 1.00642 0.95259 1.02909 1.21778 0.76648 1.01913 1.00467 1.56860 1.14366 1.58445 1.49725 1.21551 0.94939 0.93776 0.95319 1.23442 1.02163 1.01953 0.92925 1.23994 1.05217 0.92190 1.02241 1.01152 0.72154 0.72901 0.73236 1.93453 1.59581 1.86173 1.57308 1.93487 1.44247 1.77444 1.83251 1.30398 1.04129 1.21285 1.17708 1.20523 0.99105 0.93177 1.03230 1.21189 0.97545 0.97161 0.98712 1.21704 0.92758 0.99921 1.00375 1.18064 0.93187 0.91687 0.91149 1.19861 1.07295 0.96463 1.29325 0.90144 1.26765 1.01142 0.94679 0.95616 1.69793 1.40042 1.03850 1.32886 0.85059 0.76622 0.79415 0.78037 1.17990 1.18618 1.19383 1.20881 0.95949 0.99302 0.99650 0.90829 0.91879 0.92709 0.90870 0.93363 0.91880 0.90253 0.91035 0.86476 0.86511 0.86662 0.87022 0.87396 0.85785 0.84992 0.85337 0.86756 0.90020 0.87355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.19 71.98 0.66 -1.66 16 2 C -0.14 -3.24 2.88 -10.79 -0.03 -3.27 16 3 C -0.15 -2.88 7.43 71.98 0.54 -2.34 16 4 C 0.12 2.68 4.68 86.38 0.40 3.08 16 5 N -0.96 -27.97 2.77 -493.39 -1.37 -29.33 16 6 C 0.05 1.33 6.19 44.99 0.28 1.61 16 7 C -0.17 -3.08 9.80 30.59 0.30 -2.78 16 8 C -0.20 -3.84 9.62 30.59 0.29 -3.54 16 9 S 2.71 104.60 5.57 -56.49 -0.31 104.28 16 10 O -0.97 -38.60 13.91 -128.00 -1.78 -40.38 16 11 O -0.99 -43.87 16.67 -128.00 -2.13 -46.00 16 12 C -0.65 -29.02 5.96 22.22 0.13 -28.89 16 13 C -0.14 -6.08 9.54 22.46 0.21 -5.87 16 14 C -0.13 -5.73 10.02 22.22 0.22 -5.51 16 15 C -0.13 -6.57 8.64 22.73 0.20 -6.38 16 16 C 0.06 3.34 5.53 -21.29 -0.12 3.23 16 17 C -0.50 -26.65 9.06 23.46 0.21 -26.44 16 18 H 0.08 4.11 7.86 -2.91 -0.02 4.09 16 19 C 0.03 1.55 5.29 85.26 0.45 2.01 16 20 N -0.84 -43.48 10.88 21.83 0.24 -43.24 16 21 Si 0.99 37.84 29.57 68.60 2.03 39.87 16 22 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 23 H -0.26 -9.49 7.11 99.48 0.71 -8.79 16 24 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 25 C -0.14 -6.84 9.26 22.73 0.21 -6.63 16 26 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.07 2.13 5.52 -2.39 -0.01 2.11 16 30 H 0.05 1.06 6.26 -2.39 -0.01 1.05 16 31 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.08 1.12 7.15 -2.38 -0.02 1.10 16 33 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.12 1.99 5.31 -2.39 -0.01 1.97 16 35 H 0.12 3.47 8.01 -2.39 -0.02 3.45 16 36 H 0.12 1.78 5.95 -2.39 -0.01 1.76 16 37 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.12 2.16 3.66 -2.39 -0.01 2.15 16 40 H 0.13 5.03 7.50 -2.91 -0.02 5.01 16 41 H 0.13 4.90 8.06 -2.91 -0.02 4.88 16 42 H 0.11 6.05 6.32 -2.91 -0.02 6.03 16 43 H 0.29 13.51 8.30 -92.71 -0.77 12.75 16 44 H 0.11 5.24 7.71 -2.91 -0.02 5.22 16 Total: -1.00 -65.96 358.38 1.64 -64.32 By element: Atomic # 1 Polarization: 32.86 SS G_CDS: 1.01 Total: 33.87 kcal Atomic # 6 Polarization: -87.34 SS G_CDS: 3.96 Total: -83.37 kcal Atomic # 7 Polarization: -71.45 SS G_CDS: -1.13 Total: -72.58 kcal Atomic # 8 Polarization: -82.47 SS G_CDS: -3.91 Total: -86.39 kcal Atomic # 14 Polarization: 37.84 SS G_CDS: 2.03 Total: 39.87 kcal Atomic # 16 Polarization: 104.60 SS G_CDS: -0.31 Total: 104.28 kcal Total: -65.96 1.64 -64.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619475224.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.999 kcal (2) G-P(sol) polarization free energy of solvation -65.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds