Wall clock time and date at job start Tue Mar 31 2020 14:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46964 * 2 1 4 4 C 1.53004 * 109.46994 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47234 * 180.02562 * 4 3 2 6 6 C 1.46494 * 119.99906 * 274.99646 * 5 4 3 7 7 C 1.52995 * 117.50052 * 8.62279 * 6 5 4 8 8 C 1.52989 * 60.00105 * 252.50667 * 7 6 5 9 9 S 1.65605 * 120.00093 * 94.99766 * 5 4 3 10 10 O 1.42094 * 106.40354 * 156.45872 * 9 5 4 11 11 O 1.42105 * 106.39998 * 23.54079 * 9 5 4 12 12 C 1.76198 * 107.21809 * 270.00233 * 9 5 4 13 13 C 1.38662 * 119.87932 * 89.99861 * 12 9 5 14 14 C 1.38606 * 120.50057 * 179.74750 * 13 12 9 15 15 C 1.37641 * 120.25206 * 0.23091 * 14 13 12 16 16 C 1.40695 * 119.74182 * 0.02562 * 15 14 13 17 17 C 1.41393 * 120.24174 * 179.97438 * 16 15 14 18 18 H 1.08009 * 120.00091 * 204.39566 * 17 16 15 19 19 C 1.39946 * 120.00052 * 24.39173 * 17 16 15 20 20 N 1.30821 * 120.00220 * 17.86170 * 19 17 16 21 21 Si 1.86801 * 119.99877 * 197.85423 * 19 17 16 22 22 H 1.48498 * 109.47309 * 60.00550 * 21 19 17 23 23 H 1.48501 * 109.47066 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47537 * 300.00235 * 21 19 17 25 25 C 1.37602 * 119.87680 * 270.25691 * 12 9 5 26 26 H 1.09002 * 109.47193 * 60.00078 * 1 2 3 27 27 H 1.09001 * 109.47430 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47247 * 300.00166 * 1 2 3 29 29 H 1.08997 * 109.46804 * 240.00126 * 2 1 3 30 30 H 1.09002 * 109.47193 * 119.99922 * 2 1 3 31 31 H 1.08997 * 109.47256 * 60.00403 * 3 2 1 32 32 H 1.08997 * 109.47553 * 300.00005 * 3 2 1 33 33 H 1.08994 * 109.47568 * 59.99522 * 4 3 2 34 34 H 1.09002 * 109.46969 * 299.99803 * 4 3 2 35 35 H 1.09006 * 115.54994 * 154.32625 * 6 5 4 36 36 H 1.08997 * 117.49751 * 0.02562 * 7 6 5 37 37 H 1.09004 * 117.50172 * 145.01848 * 7 6 5 38 38 H 1.09001 * 117.50129 * 252.50654 * 8 7 6 39 39 H 1.09001 * 117.52182 * 107.47683 * 8 7 6 40 40 H 1.08003 * 119.74494 * 0.02562 * 13 12 9 41 41 H 1.08006 * 119.87299 * 180.25926 * 14 13 12 42 42 H 1.07999 * 120.12911 * 180.02562 * 15 14 13 43 43 H 0.96995 * 120.00105 * 179.97438 * 20 19 17 44 44 H 1.08006 * 120.12270 * 359.97357 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.1978 3.5519 -1.2635 7 6 3.6312 2.8949 -2.5238 8 6 5.1449 2.9689 -2.3142 9 16 4.4527 3.5619 1.4290 10 8 5.3688 4.5989 1.1055 11 8 4.7505 2.5210 2.3495 12 6 2.9963 4.3532 2.0267 13 6 2.1279 3.6639 2.8594 14 6 0.9811 4.2755 3.3412 15 6 0.6898 5.5749 2.9932 16 6 1.5610 6.2823 2.1446 17 6 1.2717 7.6174 1.7799 18 1 1.6767 8.0276 0.8665 19 6 0.4607 8.4074 2.6025 20 7 0.2566 8.0606 3.8473 21 14 -0.3303 9.9573 1.9230 22 1 -1.2129 9.6034 0.7824 23 1 -1.1341 10.6103 2.9873 24 1 0.7275 10.8906 1.4593 25 6 2.7221 5.6511 1.6611 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6766 1.9564 -0.8899 33 1 3.9330 0.9288 -0.8907 34 1 3.9337 0.9286 0.8891 35 1 4.1348 4.6376 -1.1899 36 1 3.1543 1.9211 -2.4127 37 1 3.1953 3.5484 -3.2795 38 1 5.7049 3.6709 -2.9319 39 1 5.6647 2.0437 -2.0650 40 1 2.3490 2.6441 3.1382 41 1 0.3139 3.7304 3.9926 42 1 -0.2040 6.0497 3.3701 43 1 -0.3053 8.6084 4.4174 44 1 3.3980 6.1849 1.0093 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619475704.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:55 Heat of formation + Delta-G solvation = -44.417440 kcal Electronic energy + Delta-G solvation = -26046.365421 eV Core-core repulsion = 22476.671863 eV Total energy + Delta-G solvation = -3569.693558 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -38.45751 -37.63866 -36.78879 -35.29731 -35.22986 -33.84671 -32.70329 -30.08396 -29.78800 -28.55382 -25.48945 -23.83419 -22.42244 -21.94587 -21.33620 -21.02313 -20.78919 -18.65031 -18.03394 -17.32764 -16.21302 -15.92954 -15.24963 -15.13524 -14.96357 -14.66155 -14.42079 -14.02208 -13.47696 -13.36385 -13.12764 -12.87452 -12.62080 -12.48729 -11.98307 -11.88487 -11.66706 -11.62209 -11.55133 -11.48539 -11.40478 -11.36272 -11.08690 -11.06633 -10.90917 -10.85870 -10.81866 -10.63571 -10.49911 -10.25810 -9.77170 -9.56822 -9.34338 -8.57117 -8.02413 -7.69903 -6.92401 -4.53539 0.94692 2.20087 2.63911 2.99071 3.00996 3.07405 3.38424 3.82311 3.84426 4.28784 4.42389 4.62238 4.83811 4.90614 4.95016 5.03939 5.08523 5.16293 5.21351 5.39126 5.51025 5.60084 5.64206 5.68577 5.81698 5.86626 5.87989 5.97844 6.03783 6.10616 6.16922 6.20046 6.25624 6.40893 6.48328 6.64109 6.71485 6.77300 6.94081 7.04900 7.22061 7.38438 7.72618 7.79838 7.94222 8.39610 8.66860 8.71658 10.03192 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012808 B = 0.004349 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.645342 B = 6437.160310 C = 6887.117371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.150 4.150 4 C 0.115 3.885 5 N -0.972 5.972 6 C 0.094 3.906 7 C -0.183 4.183 8 C -0.195 4.195 9 S 2.687 3.313 10 O -0.966 6.966 11 O -0.972 6.972 12 C -0.629 4.629 13 C -0.146 4.146 14 C -0.120 4.120 15 C -0.118 4.118 16 C 0.093 3.907 17 C -0.461 4.461 18 H 0.082 0.918 19 C 0.075 3.925 20 N -0.794 5.794 21 Si 0.912 3.088 22 H -0.263 1.263 23 H -0.277 1.277 24 H -0.264 1.264 25 C -0.125 4.125 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.135 0.865 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.105 0.895 41 H 0.097 0.903 42 H 0.124 0.876 43 H 0.284 0.716 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.828 -10.688 -9.444 14.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.189 4.189 4 C -0.011 4.011 5 N -0.804 5.804 6 C -0.013 4.013 7 C -0.222 4.222 8 C -0.234 4.234 9 S 2.785 3.215 10 O -0.956 6.956 11 O -0.963 6.963 12 C -0.721 4.721 13 C -0.167 4.167 14 C -0.140 4.140 15 C -0.138 4.138 16 C 0.089 3.911 17 C -0.490 4.490 18 H 0.100 0.900 19 C -0.143 4.143 20 N -0.419 5.419 21 Si 0.736 3.264 22 H -0.187 1.187 23 H -0.202 1.202 24 H -0.188 1.188 25 C -0.147 4.147 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.110 0.890 35 H 0.153 0.847 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.113 0.887 40 H 0.123 0.877 41 H 0.115 0.885 42 H 0.142 0.858 43 H 0.095 0.905 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 1.589 -10.632 -8.813 13.901 hybrid contribution -1.219 0.995 -0.129 1.579 sum 0.370 -9.637 -8.942 13.152 Atomic orbital electron populations 1.21756 0.95764 1.01197 1.02211 1.21442 0.96081 0.96555 1.01799 1.22219 0.95375 0.97126 1.04147 1.21396 0.94241 0.81709 1.03716 1.57249 1.81139 1.21863 1.20171 1.21338 1.03997 0.95741 0.80244 1.23331 0.96382 1.03114 0.99394 1.23375 0.92908 1.03731 1.03392 1.01827 0.74875 0.72975 0.71865 1.93522 1.61153 1.57385 1.83585 1.93496 1.84170 1.57453 1.61134 1.29780 1.21130 1.06671 1.14506 1.20036 0.96448 0.98463 1.01735 1.20796 0.97000 0.95848 1.00317 1.21634 0.99736 0.92480 0.99927 1.17660 0.89588 0.93063 0.90763 1.19567 1.26444 0.95962 1.07052 0.90014 1.25930 0.94596 0.99810 0.93948 1.69772 1.29254 1.37789 1.05046 0.86301 0.79823 0.80678 0.79619 1.18721 1.20234 1.18807 1.20715 0.97361 0.92891 1.03694 0.92828 0.93071 0.92382 0.92296 0.91833 0.90389 0.91080 0.90541 0.88973 0.84700 0.88056 0.88149 0.88146 0.88704 0.87728 0.88465 0.85787 0.90495 0.87223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.91 37.16 0.37 -1.16 16 2 C -0.12 -1.23 5.93 -26.73 -0.16 -1.38 16 3 C -0.15 -1.85 5.31 -26.73 -0.14 -1.99 16 4 C 0.11 1.45 4.95 -4.04 -0.02 1.43 16 5 N -0.97 -14.70 3.12 -107.31 -0.33 -15.03 16 6 C 0.09 1.27 6.10 -67.94 -0.41 0.86 16 7 C -0.18 -1.92 9.26 -26.74 -0.25 -2.17 16 8 C -0.19 -2.13 10.12 -26.74 -0.27 -2.40 16 9 S 2.69 52.02 5.69 -107.50 -0.61 51.41 16 10 O -0.97 -20.85 16.41 -57.17 -0.94 -21.79 16 11 O -0.97 -20.13 15.82 -57.17 -0.90 -21.03 16 12 C -0.63 -13.75 5.97 -39.66 -0.24 -13.99 16 13 C -0.15 -3.14 8.43 -39.29 -0.33 -3.47 16 14 C -0.12 -2.67 10.02 -39.66 -0.40 -3.07 16 15 C -0.12 -2.91 8.70 -38.87 -0.34 -3.25 16 16 C 0.09 2.38 5.57 -106.83 -0.60 1.78 16 17 C -0.46 -11.74 9.05 -37.74 -0.34 -12.08 16 18 H 0.08 1.98 7.91 -52.48 -0.41 1.57 16 19 C 0.08 1.82 5.14 -17.34 -0.09 1.73 16 20 N -0.79 -19.77 10.95 55.55 0.61 -19.16 16 21 Si 0.91 17.96 29.60 -169.99 -5.03 12.93 16 22 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 23 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 24 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 25 C -0.13 -2.99 9.26 -38.87 -0.36 -3.35 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.64 8.14 -51.92 -0.42 0.21 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.08 1.15 7.00 -51.93 -0.36 0.78 16 32 H 0.07 0.86 6.96 -51.93 -0.36 0.50 16 33 H 0.08 0.79 6.56 -51.93 -0.34 0.45 16 34 H 0.09 1.22 6.91 -51.93 -0.36 0.86 16 35 H 0.14 1.90 7.98 -51.93 -0.41 1.49 16 36 H 0.10 0.98 5.74 -51.93 -0.30 0.69 16 37 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.09 0.99 8.06 -51.93 -0.42 0.58 16 40 H 0.10 2.05 7.60 -52.48 -0.40 1.65 16 41 H 0.10 1.89 8.06 -52.48 -0.42 1.47 16 42 H 0.12 3.12 6.15 -52.49 -0.32 2.80 16 43 H 0.28 6.43 8.30 -40.82 -0.34 6.10 16 44 H 0.11 2.51 7.61 -52.48 -0.40 2.11 16 LS Contribution 368.48 15.07 5.55 5.55 Total: -1.00 -29.45 368.48 -11.84 -41.29 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -6.61 Total: 8.33 kcal Atomic # 6 Polarization: -38.93 SS G_CDS: -3.57 Total: -42.50 kcal Atomic # 7 Polarization: -34.46 SS G_CDS: 0.27 Total: -34.19 kcal Atomic # 8 Polarization: -40.98 SS G_CDS: -1.84 Total: -42.82 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.93 kcal Atomic # 16 Polarization: 52.02 SS G_CDS: -0.61 Total: 51.41 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.45 -11.84 -41.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619475704.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.130 kcal (2) G-P(sol) polarization free energy of solvation -29.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds