Wall clock time and date at job start Tue Mar 31 2020 14:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46964 * 2 1 4 4 C 1.53004 * 109.46994 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47234 * 180.02562 * 4 3 2 6 6 C 1.46494 * 119.99906 * 274.99646 * 5 4 3 7 7 C 1.52995 * 117.50052 * 8.62279 * 6 5 4 8 8 C 1.52989 * 60.00105 * 252.50667 * 7 6 5 9 9 S 1.65605 * 120.00093 * 94.99766 * 5 4 3 10 10 O 1.42094 * 106.40354 * 156.45872 * 9 5 4 11 11 O 1.42105 * 106.39998 * 23.54079 * 9 5 4 12 12 C 1.76198 * 107.21809 * 270.00233 * 9 5 4 13 13 C 1.38662 * 119.87932 * 89.99861 * 12 9 5 14 14 C 1.38606 * 120.50057 * 179.74750 * 13 12 9 15 15 C 1.37641 * 120.25206 * 0.23091 * 14 13 12 16 16 C 1.40695 * 119.74182 * 0.02562 * 15 14 13 17 17 C 1.41393 * 120.24174 * 179.97438 * 16 15 14 18 18 H 1.08009 * 120.00091 * 204.39566 * 17 16 15 19 19 C 1.39946 * 120.00052 * 24.39173 * 17 16 15 20 20 N 1.30821 * 120.00220 * 17.86170 * 19 17 16 21 21 Si 1.86801 * 119.99877 * 197.85423 * 19 17 16 22 22 H 1.48498 * 109.47309 * 60.00550 * 21 19 17 23 23 H 1.48501 * 109.47066 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47537 * 300.00235 * 21 19 17 25 25 C 1.37602 * 119.87680 * 270.25691 * 12 9 5 26 26 H 1.09002 * 109.47193 * 60.00078 * 1 2 3 27 27 H 1.09001 * 109.47430 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47247 * 300.00166 * 1 2 3 29 29 H 1.08997 * 109.46804 * 240.00126 * 2 1 3 30 30 H 1.09002 * 109.47193 * 119.99922 * 2 1 3 31 31 H 1.08997 * 109.47256 * 60.00403 * 3 2 1 32 32 H 1.08997 * 109.47553 * 300.00005 * 3 2 1 33 33 H 1.08994 * 109.47568 * 59.99522 * 4 3 2 34 34 H 1.09002 * 109.46969 * 299.99803 * 4 3 2 35 35 H 1.09006 * 115.54994 * 154.32625 * 6 5 4 36 36 H 1.08997 * 117.49751 * 0.02562 * 7 6 5 37 37 H 1.09004 * 117.50172 * 145.01848 * 7 6 5 38 38 H 1.09001 * 117.50129 * 252.50654 * 8 7 6 39 39 H 1.09001 * 117.52182 * 107.47683 * 8 7 6 40 40 H 1.08003 * 119.74494 * 0.02562 * 13 12 9 41 41 H 1.08006 * 119.87299 * 180.25926 * 14 13 12 42 42 H 1.07999 * 120.12911 * 180.02562 * 15 14 13 43 43 H 0.96995 * 120.00105 * 179.97438 * 20 19 17 44 44 H 1.08006 * 120.12270 * 359.97357 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.1978 3.5519 -1.2635 7 6 3.6312 2.8949 -2.5238 8 6 5.1449 2.9689 -2.3142 9 16 4.4527 3.5619 1.4290 10 8 5.3688 4.5989 1.1055 11 8 4.7505 2.5210 2.3495 12 6 2.9963 4.3532 2.0267 13 6 2.1279 3.6639 2.8594 14 6 0.9811 4.2755 3.3412 15 6 0.6898 5.5749 2.9932 16 6 1.5610 6.2823 2.1446 17 6 1.2717 7.6174 1.7799 18 1 1.6767 8.0276 0.8665 19 6 0.4607 8.4074 2.6025 20 7 0.2566 8.0606 3.8473 21 14 -0.3303 9.9573 1.9230 22 1 -1.2129 9.6034 0.7824 23 1 -1.1341 10.6103 2.9873 24 1 0.7275 10.8906 1.4593 25 6 2.7221 5.6511 1.6611 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6766 1.9564 -0.8899 33 1 3.9330 0.9288 -0.8907 34 1 3.9337 0.9286 0.8891 35 1 4.1348 4.6376 -1.1899 36 1 3.1543 1.9211 -2.4127 37 1 3.1953 3.5484 -3.2795 38 1 5.7049 3.6709 -2.9319 39 1 5.6647 2.0437 -2.0650 40 1 2.3490 2.6441 3.1382 41 1 0.3139 3.7304 3.9926 42 1 -0.2040 6.0497 3.3701 43 1 -0.3053 8.6084 4.4174 44 1 3.3980 6.1849 1.0093 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619475704.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:54 Heat of formation + Delta-G solvation = -60.372533 kcal Electronic energy + Delta-G solvation = -26047.057286 eV Core-core repulsion = 22476.671863 eV Total energy + Delta-G solvation = -3570.385423 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.51746 -39.40957 -38.39526 -36.94415 -36.15937 -35.67295 -33.72184 -31.93166 -31.59650 -29.53502 -27.35569 -24.79033 -23.69343 -23.26721 -22.82131 -22.37242 -21.83284 -20.18153 -19.46906 -18.81948 -17.76834 -17.44525 -16.88173 -16.56282 -16.27016 -15.98100 -15.62714 -15.22723 -15.10559 -14.92386 -14.32912 -14.14785 -13.81797 -13.73022 -13.46652 -13.32436 -13.25489 -13.09053 -13.08651 -13.05454 -12.88257 -12.64437 -12.57783 -12.27739 -12.21755 -12.03075 -11.79572 -11.77887 -11.57778 -11.43921 -11.36695 -11.16289 -11.11196 -9.86988 -9.66941 -9.56295 -8.73738 -6.45803 -0.57929 0.40070 0.83820 1.36546 1.46065 1.49675 1.98308 2.17049 2.54851 2.70530 2.99717 3.31157 3.50147 3.78233 3.92240 4.00636 4.08731 4.15591 4.22805 4.28618 4.33587 4.41922 4.54996 4.65724 4.79732 4.82055 4.84287 4.88968 4.96674 4.98670 5.05391 5.06445 5.16759 5.19272 5.29409 5.30721 5.36623 5.39944 5.46266 5.55275 5.56309 5.72722 5.87658 5.92432 6.09309 6.51334 6.78997 6.83792 8.24306 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012808 B = 0.004349 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.645342 B = 6437.160310 C = 6887.117371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.148 4.148 4 C 0.108 3.892 5 N -0.961 5.961 6 C 0.050 3.950 7 C -0.161 4.161 8 C -0.181 4.181 9 S 2.709 3.291 10 O -0.991 6.991 11 O -0.985 6.985 12 C -0.636 4.636 13 C -0.143 4.143 14 C -0.121 4.121 15 C -0.140 4.140 16 C 0.065 3.935 17 C -0.498 4.498 18 H 0.081 0.919 19 C 0.036 3.964 20 N -0.825 5.825 21 Si 0.985 3.015 22 H -0.257 1.257 23 H -0.267 1.267 24 H -0.260 1.260 25 C -0.144 4.144 26 H 0.054 0.946 27 H 0.066 0.934 28 H 0.040 0.960 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.049 0.951 32 H 0.073 0.927 33 H 0.111 0.889 34 H 0.088 0.912 35 H 0.118 0.882 36 H 0.115 0.885 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.104 0.896 40 H 0.127 0.873 41 H 0.125 0.875 42 H 0.113 0.887 43 H 0.292 0.708 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.705 -12.238 -11.225 16.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.187 4.187 4 C -0.016 4.016 5 N -0.796 5.796 6 C -0.056 4.056 7 C -0.199 4.199 8 C -0.220 4.220 9 S 2.804 3.196 10 O -0.982 6.982 11 O -0.975 6.975 12 C -0.724 4.724 13 C -0.164 4.164 14 C -0.141 4.141 15 C -0.160 4.160 16 C 0.061 3.939 17 C -0.527 4.527 18 H 0.099 0.901 19 C -0.179 4.179 20 N -0.450 5.450 21 Si 0.805 3.195 22 H -0.181 1.181 23 H -0.191 1.191 24 H -0.185 1.185 25 C -0.165 4.165 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.060 0.940 29 H 0.101 0.899 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.129 0.871 34 H 0.106 0.894 35 H 0.136 0.864 36 H 0.133 0.867 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.123 0.877 40 H 0.145 0.855 41 H 0.143 0.857 42 H 0.131 0.869 43 H 0.103 0.897 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.448 -12.179 -10.570 16.191 hybrid contribution -1.117 1.330 0.381 1.778 sum 0.331 -10.849 -10.189 14.887 Atomic orbital electron populations 1.21768 0.95848 1.01977 1.01466 1.21436 0.95967 0.95028 1.03037 1.22195 0.95143 0.98516 1.02873 1.21683 0.94446 0.80252 1.05192 1.56889 1.81087 1.22515 1.19156 1.21548 1.08242 0.95370 0.80462 1.23450 0.96232 1.03375 0.96886 1.23489 0.93419 1.03916 1.01227 1.01091 0.73722 0.72284 0.72477 1.93481 1.61713 1.58785 1.84199 1.93469 1.84068 1.57321 1.62656 1.30277 1.22094 1.06191 1.13888 1.20352 0.95922 0.99302 1.00832 1.21109 0.97649 0.95163 1.00131 1.21631 0.99742 0.93625 1.01017 1.18017 0.90473 0.93798 0.91578 1.19840 1.28397 0.96645 1.07774 0.90126 1.26783 0.94349 1.02912 0.93854 1.69819 1.29769 1.39328 1.06114 0.85210 0.78803 0.76405 0.79100 1.18129 1.19077 1.18473 1.20777 0.97290 0.93978 1.04460 0.92708 0.91534 0.94047 0.89919 0.91702 0.93252 0.90848 0.87083 0.89383 0.86380 0.86689 0.86837 0.86978 0.87718 0.85544 0.85724 0.86903 0.89738 0.87460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 9.91 71.98 0.71 -2.07 16 2 C -0.12 -2.06 5.93 30.59 0.18 -1.88 16 3 C -0.15 -3.40 5.31 30.60 0.16 -3.24 16 4 C 0.11 2.50 4.95 86.38 0.43 2.93 16 5 N -0.96 -28.01 3.12 -493.42 -1.54 -29.55 16 6 C 0.05 1.30 6.10 44.99 0.27 1.57 16 7 C -0.16 -2.88 9.26 30.59 0.28 -2.59 16 8 C -0.18 -3.45 10.12 30.59 0.31 -3.14 16 9 S 2.71 105.10 5.69 -56.49 -0.32 104.78 16 10 O -0.99 -43.53 16.41 -128.00 -2.10 -45.63 16 11 O -0.98 -40.19 15.82 -128.00 -2.02 -42.22 16 12 C -0.64 -28.38 5.97 22.22 0.13 -28.25 16 13 C -0.14 -6.20 8.43 22.46 0.19 -6.01 16 14 C -0.12 -5.47 10.02 22.22 0.22 -5.25 16 15 C -0.14 -7.20 8.70 22.73 0.20 -7.00 16 16 C 0.06 3.46 5.57 -21.29 -0.12 3.34 16 17 C -0.50 -26.43 9.05 23.46 0.21 -26.21 16 18 H 0.08 4.11 7.91 -2.91 -0.02 4.08 16 19 C 0.04 1.80 5.14 85.26 0.44 2.24 16 20 N -0.82 -42.21 10.95 21.83 0.24 -41.97 16 21 Si 0.98 37.20 29.60 68.60 2.03 39.23 16 22 H -0.26 -9.40 7.11 99.48 0.71 -8.70 16 23 H -0.27 -9.50 7.11 99.48 0.71 -8.79 16 24 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 25 C -0.14 -7.18 9.26 22.73 0.21 -6.97 16 26 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 29 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.05 1.42 7.00 -2.39 -0.02 1.40 16 32 H 0.07 1.63 6.96 -2.39 -0.02 1.62 16 33 H 0.11 1.83 6.56 -2.39 -0.02 1.82 16 34 H 0.09 2.14 6.91 -2.39 -0.02 2.12 16 35 H 0.12 3.41 7.98 -2.38 -0.02 3.39 16 36 H 0.11 1.75 5.74 -2.39 -0.01 1.74 16 37 H 0.11 1.76 8.14 -2.38 -0.02 1.74 16 38 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.10 1.81 8.06 -2.39 -0.02 1.79 16 40 H 0.13 4.85 7.60 -2.91 -0.02 4.83 16 41 H 0.12 4.80 8.06 -2.91 -0.02 4.77 16 42 H 0.11 5.94 6.15 -2.91 -0.02 5.92 16 43 H 0.29 13.46 8.30 -92.71 -0.77 12.69 16 44 H 0.11 5.22 7.61 -2.91 -0.02 5.20 16 Total: -1.00 -65.48 368.48 1.11 -64.37 By element: Atomic # 1 Polarization: 32.55 SS G_CDS: 0.99 Total: 33.54 kcal Atomic # 6 Polarization: -86.39 SS G_CDS: 3.84 Total: -82.55 kcal Atomic # 7 Polarization: -70.22 SS G_CDS: -1.30 Total: -71.52 kcal Atomic # 8 Polarization: -83.73 SS G_CDS: -4.13 Total: -87.85 kcal Atomic # 14 Polarization: 37.20 SS G_CDS: 2.03 Total: 39.23 kcal Atomic # 16 Polarization: 105.10 SS G_CDS: -0.32 Total: 104.78 kcal Total: -65.48 1.11 -64.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619475704.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.000 kcal (2) G-P(sol) polarization free energy of solvation -65.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds